mRNA_H-paniculata_contig38966.10156.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig38966.10156.1
Unique Name	mRNA_H-paniculata_contig38966.10156.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Match: A0A6H5K8C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8C1_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.060e-24
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 1

Query:    4 LIWTPPYMPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN 156
            LIWTPPYMP+F PIELFW HGK +VS++++ G  +L+VW+QIRLGWYGDP 
Sbjct:    8 LIWTPPYMPTFHPIELFWQHGKHYVSIHFEKGRNMLDVWKQIRLGWYGDPG 58

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BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Match: A0A6H5KCN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN2_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 5.990e-23
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 1

Query:    4 LIWTPPYMPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN 156
            LIWTPPYMP+FQPIELFW HGK +VS++++ G  IL+VW+QIRLGWYGDP 
Sbjct:  389 LIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRNILDVWKQIRLGWYGDPE 439

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BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Match: A0A6H5LE74_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE74_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.370e-22
Identity = 36/51 (70.59%), Postives = 45/51 (88.24%), Query Frame = 1

Query:    4 LIWTPPYMPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN 156
            LIWTPPYMP+FQPIELFW HGK +VS++++ G  +L+VW+QIRLGWYGDP 
Sbjct:  351 LIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRNMLDVWKQIRLGWYGDPE 401

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BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Match: A0A6H5KP14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP14_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.500e-22
Identity = 36/51 (70.59%), Postives = 45/51 (88.24%), Query Frame = 1

Query:    4 LIWTPPYMPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN 156
            LIWTPPYMP+FQPIELFW HGK +VS++++ G  +L+VW+QIRLGWYGDP 
Sbjct:  433 LIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRNMLDVWKQIRLGWYGDPE 483

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BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Match: A0A6H5JG34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG34_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.440e-22
Identity = 36/51 (70.59%), Postives = 45/51 (88.24%), Query Frame = 1

Query:    4 LIWTPPYMPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN 156
            LIWTPPYMP+FQPIELFW HGK +VS++++ G  +L+VW+QIRLGWYGDP 
Sbjct:  530 LIWTPPYMPTFQPIELFWQHGKHYVSIHFERGRNMLDVWKQIRLGWYGDPE 580

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BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Match: A0A6H5JH53_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH53_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.870e-22
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1

Query:    4 LIWTPPYMPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN 156
            LIWTPPYMPSFQPIELFW HGKQ+VS+N++   ++ EVW QIR GWYGD  
Sbjct:    8 LIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKE 58

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BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 8.480e-22
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1

Query:    1 DLIWTPPYMPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN 156
             LIWTPPYMPSFQPIELFW HGKQ+VS N+K+   + EVW Q+R GWYGDP 
Sbjct:  511 QLIWTPPYMPSFQPIELFWQHGKQYVSFNFKTKRTMAEVWAQVRKGWYGDPT 562

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BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Match: A0A6H5KGN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN0_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.780e-21
Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 1

Query:    4 LIWTPPYMPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN 156
            LIWTPPYMP+FQPIELFW HGK ++S++++ G  +L+VW+QIRLG YGDP 
Sbjct:  105 LIWTPPYMPTFQPIELFWQHGKHYLSIHFEKGRNMLDVWKQIRLGCYGDPE 155

[Close]

BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Match: A0A6H5L7T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T4_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.650e-21
Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 1

Query:    4 LIWTPPYMPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN 156
            LIWTPPYMP+FQPIELFW HGK +VS++++ G  +L+VW +IRLGWYG+P 
Sbjct:  300 LIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRTMLDVWRRIRLGWYGNPE 350

[Close]

BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Match: A0A6H5KKL0_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL0_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 6.000e-21
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 1

Query:    4 LIWTPPYMPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN 156
            LIWTPPYMPSFQPIELFW HGKQ+VSVN++   ++ EVW QIR GWYGD  
Sbjct:  402 LIWTPPYMPSFQPIELFWQHGKQYVSVNFELKRKVREVWVQIRKGWYGDKE 452

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig38966.10156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K8C1_9PHAE	1.060e-24	68.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCN2_9PHAE	5.990e-23	72.55	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5LE74_9PHAE	1.370e-22	70.59	Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KP14_9PHAE	1.500e-22	70.59	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JG34_9PHAE	2.440e-22	70.59	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JH53_9PHAE	2.870e-22	70.59	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
D8LQ25_ECTSI	8.480e-22	71.15	Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8...	[more]
A0A6H5KGN0_9PHAE	1.780e-21	66.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L7T4_9PHAE	3.650e-21	66.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KKL0_9PHAE	6.000e-21	72.55	DDE_3 domain-containing protein n=2 Tax=Ectocarpus...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig38966	contig	H-paniculata_contig38966:124..282 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	159
Cds size	135
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930194.5617945-UTR-H-paniculata_contig38966:123..147	1622930194.5617945-UTR-H-paniculata_contig38966:123..147	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig38966 124..147 +
1691481186.0608547-UTR-H-paniculata_contig38966:123..147	1691481186.0608547-UTR-H-paniculata_contig38966:123..147	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig38966 124..147 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930194.577837-CDS-H-paniculata_contig38966:147..282	1622930194.577837-CDS-H-paniculata_contig38966:147..282	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig38966 148..282 +
1691481186.068896-CDS-H-paniculata_contig38966:147..282	1691481186.068896-CDS-H-paniculata_contig38966:147..282	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig38966 148..282 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig38966.10156.1	prot_H-paniculata_contig38966.10156.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig38966 148..282 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig38966:124..282+
coding sequence from alignment at H-paniculata_contig38966:124..282+

protein sequence of mRNA_H-paniculata_contig38966.10156.1

>prot_H-paniculata_contig38966.10156.1 ID=prot_H-paniculata_contig38966.10156.1|Name=mRNA_H-paniculata_contig38966.10156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MPSFQPIELFWHHGKQHVSVNYKSGCRILEVWEQIRLGWYGDPN*

mRNA from alignment at H-paniculata_contig38966:124..282+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig38966.10156.1 ID=mRNA_H-paniculata_contig38966.10156.1|Name=mRNA_H-paniculata_contig38966.10156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig38966:124..282+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTTGATTTGGACGCCCCCGTACATGCCGAGTTTTCAACCTATCGAGTT
GTTCTGGCATCATGGTAAGCAGCATGTCAGCGTCAATTACAAGTCAGGCT
GTAGGATTCTCGAGGTCTGGGAGCAGATCCGGTTGGGTTGGTACGGCGAT
CCAAATTAG

Coding sequence (CDS) from alignment at H-paniculata_contig38966:124..282+

>mRNA_H-paniculata_contig38966.10156.1 ID=mRNA_H-paniculata_contig38966.10156.1|Name=mRNA_H-paniculata_contig38966.10156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig38966:124..282+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGAGTTTTCAACCTATCGAGTTGTTCTGGCATCATGGTAAGCAGCA
TGTCAGCGTCAATTACAAGTCAGGCTGTAGGATTCTCGAGGTCTGGGAGC
AGATCCGGTTGGGTTGGTACGGCGATCCAAATTAGATGCCGAGTTTTCAA
CCTATCGAGTTGTTCTGGCATCATGGTAAGCAGCATGTCAGCGTCAATTA
CAAGTCAGGCTGTAGGATTCTCGAGGTCTGGGAGCAGATCCGGTTGGGTT
GGTACGGCGATCCAAATTAG