prot_H-paniculata_contig389.10149.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig389.10149.1
Unique Name	prot_H-paniculata_contig389.10149.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	179

Homology

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BLAST of mRNA_H-paniculata_contig389.10149.1 vs. uniprot
Match: A0A6H5K1B1_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B1_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.200e-26
Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = 0

Query:   42 LPSMLRHTVNPVKTQGAVDAVRSGQMTFHQAAPVFGVSKSSIKPRVKGHMTIDGQVRQPTVLAKEKEDEIEGKLLWATHRHLGVGRVGLMGSVRVDCNDDRKVPWDREKGPGRSIL 157
            + SM R  V+P + + A DAVRSGQ++   AA  +GV+K ++  R+ G M +D +V   TVL+K +ED +E  L++A+   L  GR  L+ +VRV C D R VPWD +KGPGRS L
Sbjct:   15 IASMGRARVDPQQAEKACDAVRSGQLSLRAAAKAYGVNKDALSRRLSGAMAMDARVGPETVLSKAEEDAVEDALIYASRHFLSFGRQQLIDAVRVLCLDGRPVPWDPDKGPGRSWL 130

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BLAST of mRNA_H-paniculata_contig389.10149.1 vs. uniprot
Match: A0A6H5JDA5_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDA5_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 5.640e-24
Identity = 52/116 (44.83%), Postives = 72/116 (62.07%), Query Frame = 0

Query:   42 LPSMLRHTVNPVKTQGAVDAVRSGQMTFHQAAPVFGVSKSSIKPRVKGHMTIDGQVRQPTVLAKEKEDEIEGKLLWATHRHLGVGRVGLMGSVRVDCNDDRKVPWDREKGPGRSIL 157
            + SM R  V+P + Q A DAVRSGQ++   AA  +GV+K ++  R  G M +D +V   TVL K +ED +E  +++A+   L  GR  L+ +VRV C D   VPWD +KGPGRS L
Sbjct:   15 IASMGRARVDPQQAQKACDAVRSGQLSLSAAAKAYGVNKDALSRRSSGAMAMDAKVGPETVLRKAEEDAVEDAMIYASRHFLSFGRQQLIDAVRVLCLDGGPVPWDPDKGPGRSWL 130

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BLAST of mRNA_H-paniculata_contig389.10149.1 vs. uniprot
Match: A0A6H5KK08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK08_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 6.790e-22
Identity = 54/113 (47.79%), Postives = 72/113 (63.72%), Query Frame = 0

Query:   45 MLRHTVNPVKTQGAVDAVRSGQMTFHQAAPVFGVSKSSIKPRVKGHMTIDGQVRQPTVLAKEKEDEIEGKLLWATHRHLGVGRVGLMGSVRVDCNDDRKVPWDREKGPGRSIL 157
            M R  V+P + Q A+DAVRSG+M+F  AA  +G++ +S+  RVK  + ID +V   TVL KE+ED +E  L+ A    L +GR  L  +VR  C D RKVPWD +KGPG S L
Sbjct:    1 MGRARVDPERAQKAIDAVRSGEMSFRVAADTYGLNPTSLHRRVKKEVAIDARVGPGTVLCKEEEDFVEDVLMHAFRHFLLLGRGELKEAVRKICLDGRKVPWDPDKGPGDSWL 113

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BLAST of mRNA_H-paniculata_contig389.10149.1 vs. uniprot
Match: A0A6H5JCZ9_9PHAE (HTH CENPB-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCZ9_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 9.070e-20
Identity = 47/113 (41.59%), Postives = 68/113 (60.18%), Query Frame = 0

Query:   45 MLRHTVNPVKTQGAVDAVRSGQMTFHQAAPVFGVSKSSIKPRVKGHMTIDGQVRQPTVLAKEKEDEIEGKLLWATHRHLGVGRVGLMGSVRVDCNDDRKVPWDREKGPGRSIL 157
            M R  V+    + A  AVR+G M+ + AA  FG+SK+S+  R+ G   +D +V   TVL KE+E+ +E  LL+A   ++ + R  L   VR  CND R +PWD +KGPG+S L
Sbjct:    1 MGRSRVDSAAAEKACAAVRNGSMSRYAAAAAFGLSKTSLLRRLSGECDMDARVGHGTVLTKEEENALEDVLLYAGRNYIPLTRNDLKERVRRLCNDGRPIPWDPDKGPGKSWL 113

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BLAST of mRNA_H-paniculata_contig389.10149.1 vs. uniprot
Match: A0A6H5JTL4_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL4_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.430e-19
Identity = 47/113 (41.59%), Postives = 68/113 (60.18%), Query Frame = 0

Query:   45 MLRHTVNPVKTQGAVDAVRSGQMTFHQAAPVFGVSKSSIKPRVKGHMTIDGQVRQPTVLAKEKEDEIEGKLLWATHRHLGVGRVGLMGSVRVDCNDDRKVPWDREKGPGRSIL 157
            M R  V+    + A  AVR+G M+ + AA  FG+SK+S+  R+ G   +D +V   TVL KE+E+ +E  LL+A   ++ + R  L   VR  CND R +PWD +KGPG+S L
Sbjct:    1 MGRSRVDSAAAEKACAAVRNGSMSRYAAAAAFGLSKTSLLRRLSGECDMDARVGHGTVLTKEEENALEDVLLYACRNYIPLTRNDLKERVRQLCNDGRPIPWDPDKGPGKSWL 113

[Close]

BLAST of mRNA_H-paniculata_contig389.10149.1 vs. uniprot
Match: A0A6H5JLA4_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLA4_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 4.830e-19
Identity = 47/113 (41.59%), Postives = 68/113 (60.18%), Query Frame = 0

Query:   45 MLRHTVNPVKTQGAVDAVRSGQMTFHQAAPVFGVSKSSIKPRVKGHMTIDGQVRQPTVLAKEKEDEIEGKLLWATHRHLGVGRVGLMGSVRVDCNDDRKVPWDREKGPGRSIL 157
            M R  V+    + A  AVR+G M+ + AA  FG++K+S+  R+ G   ID +V   TVL KE+E+ +E  LL+A   ++ + R  L   VR  CND R +PWD +KGPG+S L
Sbjct:    1 MGRSRVDSAAAEKACAAVRNGSMSRYAAAAAFGLTKTSLLRRLSGECDIDARVGHGTVLMKEEENALEDVLLYAGRNYIPLTRNDLKERVRQLCNDGRPIPWDPDKGPGKSWL 113

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BLAST of mRNA_H-paniculata_contig389.10149.1 vs. uniprot
Match: A0A6H5JDZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDZ5_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.180e-18
Identity = 47/113 (41.59%), Postives = 68/113 (60.18%), Query Frame = 0

Query:   45 MLRHTVNPVKTQGAVDAVRSGQMTFHQAAPVFGVSKSSIKPRVKGHMTIDGQVRQPTVLAKEKEDEIEGKLLWATHRHLGVGRVGLMGSVRVDCNDDRKVPWDREKGPGRSIL 157
            M R  V+    + A  AVR+G M+ + AA  FG+SK+S+  R+ G   +D +V   TVL KE+E+ +E  LL+A   ++ + R  L   VR  CNDDR +PWD +KG G+S L
Sbjct:    1 MGRSRVDSAAAEKACAAVRNGSMSRYAAAAAFGLSKTSLLRRLSGECDMDARVGHGTVLTKEEENALEDVLLYAGRNYIPLTRNDLKERVRQLCNDDRPIPWDPDKGLGKSWL 113

[Close]

BLAST of mRNA_H-paniculata_contig389.10149.1 vs. uniprot
Match: A0A6H5JY96_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY96_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.750e-15
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 0

Query:   64 SGQMTFHQAAPVFGVSKSSIKPRVKGHMTIDGQVRQPTVLAKEKEDEIEGKLLWATHRHLGVGRVGLMGSVRVDCNDDRKVPWDREKGPGRSIL 157
            SGQ++   AA  +GV+K ++  R+ G M +D +V   TVL+K  +  +E  L++A+   L  GR  L+ +VRV C   R VPWD +KGPGRS L
Sbjct:   27 SGQLSLRAAAKAYGVNKDALSRRLSGAMAMDARVGPETVLSKADDYAVEDALIYASRHFLSFGRQQLIDAVRVLCLHGRPVPWDPDKGPGRSWL 120

[Close]

BLAST of mRNA_H-paniculata_contig389.10149.1 vs. uniprot
Match: A0A6H5KF28_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF28_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 8.370e-15
Identity = 51/137 (37.23%), Postives = 68/137 (49.64%), Query Frame = 0

Query:   50 VNPVKTQGAVDAVRSGQMTFHQAAPVFGVSKSSIKPRVKGHMTIDG-----------------------------QVRQPTVLAKEKEDEIEGKLLWATHRHLGVGRVGLMGSVRVDCNDDRKVPWDREKGPGRSIL 157
            V+P + Q AVDAVRSG+M+F  AA  +G++ +S+  RVK  + ID                              +V   TVL KE  D +E  L+ A+   L +GR  L  +VR    D RKVPWD +KGPG S L
Sbjct:    6 VDPERAQKAVDAVRSGEMSFRVAADTYGLNPTSLHRRVKKEVAIDAXXXXXXXXXXXXXXXXXXXXXXXXXXIYAKVGPGTVLCKEAGDFVEDVLIHASPHFLLLGRRELKEAVRRIYKDGRKVPWDPDKGPGDSWL 142

[Close]

BLAST of mRNA_H-paniculata_contig389.10149.1 vs. uniprot
Match: A0A6H5K8A1_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8A1_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.990e-13
Identity = 44/115 (38.26%), Postives = 63/115 (54.78%), Query Frame = 0

Query:   45 MLRHTVNPVKTQGAVDAVRSGQMTFHQAAPVFGVSKSSIKPRVKGHMTIDGQVRQPTVLAKEKEDEIE--GKLLWATHRHLGVGRVGLMGSVRVDCNDDRKVPWDREKGPGRSIL 157
            M R  V+    + A  AVR+G M+ + AA  FG+SK+S+  R+ G   +D +V   TVL KE+E+  +    + W+    L      L   VR  CND R +PWD +KGPG+S L
Sbjct:    1 MGRSRVDSAAAEKACAAVRNGSMSRYAAAAAFGLSKTSLLRRLSGECDMDARVGHGTVLTKEEENARKRCAAVRWS---ELYSSHDDLKERVRQLCNDGRPIPWDPDKGPGKSWL 112

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig389.10149.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig389.10149.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11


Match Name	E-value	Identity	Description
A0A6H5K1B1_9PHAE	3.200e-26	45.69	HTH psq-type domain-containing protein n=1 Tax=Ect...	[more]
A0A6H5JDA5_9PHAE	5.640e-24	44.83	HTH psq-type domain-containing protein n=1 Tax=Ect...	[more]
A0A6H5KK08_9PHAE	6.790e-22	47.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JCZ9_9PHAE	9.070e-20	41.59	HTH CENPB-type domain-containing protein (Fragment...	[more]
A0A6H5JTL4_9PHAE	1.430e-19	41.59	HTH CENPB-type domain-containing protein n=1 Tax=E...	[more]
A0A6H5JLA4_9PHAE	4.830e-19	41.59	HTH CENPB-type domain-containing protein n=1 Tax=E...	[more]
A0A6H5JDZ5_9PHAE	1.180e-18	41.59	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JY96_9PHAE	2.750e-15	42.55	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5KF28_9PHAE	8.370e-15	37.23	HTH psq-type domain-containing protein n=1 Tax=Ect...	[more]
A0A6H5K8A1_9PHAE	1.990e-13	38.26	HTH psq-type domain-containing protein n=1 Tax=Ect...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007889	DNA binding HTH domain, Psq-type	PFAM	PF05225	HTH_psq	coord: 58..92 e-value: 9.1E-10 score: 38.1
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 55..95

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig389	contig	H-paniculata_contig389:21759..22295 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig389.10149.1	mRNA_H-paniculata_contig389.10149.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig389 20183..25861 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig389.10149.1 ID=prot_H-paniculata_contig389.10149.1|Name=mRNA_H-paniculata_contig389.10149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp
MSGAQRLSLARRGTIYTPCRTYSTNIELPTSFCEFQEYPTCLPSMLRHTV
NPVKTQGAVDAVRSGQMTFHQAAPVFGVSKSSIKPRVKGHMTIDGQVRQP
TVLAKEKEDEIEGKLLWATHRHLGVGRVGLMGSVRVDCNDDRKVPWDREK
GPGRSILREAPSSAGATQPRLRSEQDHG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007889	HTH_Psq
IPR009057	Homeobox-like_sf