mRNA_H-paniculata_contig3889.10145.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3889.10145.1 vs. uniprot
Match: D8LTK0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK0_ECTSI) HSP 1 Score: 287 bits (734), Expect = 1.510e-90 Identity = 175/360 (48.61%), Postives = 213/360 (59.17%), Query Frame = 1
Query: 328 PTRVRVRPQRSVRGPRGVRDIPVGKFLRPGVLGGLSVSPWVVQEEAERVRRMGSHRLALSKDAFVFRRKRDEGSLLDYAEETNGVKRFLEQTHPIRDESCPPKCGFSYRRVGHEIEPPDFYDTSLDSVRPRTVGYSPGHVRSLSPTPALMWGGRASARENLQWRKGTGGSLGAVEASLGGTEMCRSRRIRP-RSVSMCEQYPGIKQGNHNDAHSDEDPGREDECFSRRKLRQNIAQIRPMWSHQGPRSA----LSLSSPYPALRPFSSSYDHLGRTMTREVLSRATTNLRPQQFDTLQRRSEYCDALNVKRGARQLRLATEAKSVMLEKERAKNAAEEREGIKGFEGSLKAVLTKKWKYL 1392
P++VR +P+RSVRGPRGV +I G F +PGVLGGL+VSPWVV+EE ER +R+ SH+ +S + VFRRKR+EG LLDYAEE + VKRFL++ HPIRDESCPPK GFSY S+R +++W +GTGGSLG V+A L GT C RP RS + Q Q + +DE R + + ++RPMWS QG R+ S S PALRPFSSS D LGR M+REVLSR+T L+PQQFDT QRRSEY AL +R ARQ R A + LEKER KNA EEREGI FEGSLK +L +KWKYL
Sbjct: 4 PSKVRTKPRRSVRGPRGVPNIEPGTFKKPGVLGGLNVSPWVVEEEVERAQRVLSHKATISTNPVVFRRKREEGGLLDYAEEMHAVKRFLDKIHPIRDESCPPKSGFSYSE---------------------------------------------SSRVSMEWGEGTGGSLGTVKACLRGTSRCGGSATRPSRSCPLPSQRSRFGQSWETEDFTDEGSPRNNNQGQEADRDGSGIEVRPMWSRQGLRATRPGTTSSSFQGPALRPFSSSCDQLGRPMSREVLSRSTAGLKPQQFDTTQRRSEYTCALLGRREARQSREAGRVVAAQLEKERRKNATEEREGIDKFEGSLKEILAQKWKYL 318
BLAST of mRNA_H-paniculata_contig3889.10145.1 vs. uniprot
Match: A0A6H5KWZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWZ1_9PHAE) HSP 1 Score: 121 bits (304), Expect = 1.320e-29 Identity = 74/121 (61.16%), Postives = 84/121 (69.42%), Query Frame = 1
Query: 1042 MWSHQGPRSA----LSLSSPYPALRPFSSSYDHLGRTMTREVLSRATTNLRPQQFDTLQRRSEYCDALNVKRGARQLRLATEAKSVMLEKERAKNAAEEREGIKGFEGSLKAVLTKKWKYL 1392
MWS QG R+ S S PALRPFSSS D LGR M+R VLSR+T L+PQQFDT QRRSEY AL +R AR+ R A + LEKER KNA EEREGI+ FEGSLK +L +KWKYL
Sbjct: 1 MWSRQGLRATRPGTTSSSFQGPALRPFSSSRDQLGRPMSRAVLSRSTAGLKPQQFDTTQRRSEYTCALLGRREARRSREAGRIVAEQLEKERRKNATEEREGIEKFEGSLKEILAQKWKYL 121
BLAST of mRNA_H-paniculata_contig3889.10145.1 vs. uniprot
Match: A0A835YW10_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW10_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 4.150e-8 Identity = 35/89 (39.33%), Postives = 49/89 (55.06%), Query Frame = 1
Query: 529 RKRDEGSLLDYAEETNGVKRFLEQTHPIRDESCP--PKCGFSYRRV-----GHEIEPPDFYDTSLDSVRPRTVGYSPGHVRSLSPTPAL 774
R+ + GSL A E + ++ HP+RD P+ G+++ R+ G P YD +VRPRT GY+PGHVRSLSPTP +
Sbjct: 164 RRCEPGSLQQIALEQHTLRHSAGHIHPVRDPRALSLPRAGYTFSRLPPALRGAREAPEACYDVQFSAVRPRTTGYNPGHVRSLSPTPTM 252 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3889.10145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3889.10145.1 >prot_H-paniculata_contig3889.10145.1 ID=prot_H-paniculata_contig3889.10145.1|Name=mRNA_H-paniculata_contig3889.10145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=465bp MKGVNENMCTSSTASSEQEGDGENSAPINLNHSMLKSAISSGMPTFLHTTback to top mRNA from alignment at H-paniculata_contig3889:3405..7690- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3889.10145.1 ID=mRNA_H-paniculata_contig3889.10145.1|Name=mRNA_H-paniculata_contig3889.10145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4286bp|location=Sequence derived from alignment at H-paniculata_contig3889:3405..7690- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3889:3405..7690- >mRNA_H-paniculata_contig3889.10145.1 ID=mRNA_H-paniculata_contig3889.10145.1|Name=mRNA_H-paniculata_contig3889.10145.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2790bp|location=Sequence derived from alignment at H-paniculata_contig3889:3405..7690- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |