mRNA_H-paniculata_contig38867.10141.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38867.10141.1
Unique NamemRNA_H-paniculata_contig38867.10141.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig38867.10141.1 vs. uniprot
Match: A0A6H5JML5_9PHAE (DDHD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JML5_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.090e-10
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   25 QVHGDEAVEDGLIRDITLPSLIQFRDFASQAIMDVMYYLTP 147
            +VHG+EA  +G+I+DIT  S+  FRDFASQAIMDVMYYLTP
Sbjct:  333 EVHGNEAAAEGMIQDITFDSIPGFRDFASQAIMDVMYYLTP 373
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38867.10141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JML5_9PHAE1.090e-1070.73DDHD domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38867contigH-paniculata_contig38867:728..886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue7.9e-10
Seed eggNOG ortholog2880.D8LNU2
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.phospholipase activity
EggNOG OGsKOG2308@1,KOG2308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930192.2576413-CDS-H-paniculata_contig38867:727..8861622930192.2576413-CDS-H-paniculata_contig38867:727..886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38867 728..886 +
1691481185.269057-CDS-H-paniculata_contig38867:727..8861691481185.269057-CDS-H-paniculata_contig38867:727..886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38867 728..886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38867.10141.1prot_H-paniculata_contig38867.10141.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38867 728..886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38867.10141.1

>prot_H-paniculata_contig38867.10141.1 ID=prot_H-paniculata_contig38867.10141.1|Name=mRNA_H-paniculata_contig38867.10141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
FVVCVKKLQVHGDEAVEDGLIRDITLPSLIQFRDFASQAIMDVMYYLTPR
YH*
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mRNA from alignment at H-paniculata_contig38867:728..886+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38867.10141.1 ID=mRNA_H-paniculata_contig38867.10141.1|Name=mRNA_H-paniculata_contig38867.10141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig38867:728..886+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGTTGTATGTGTAAAAAAATTACAGGTTCACGGCGATGAAGCAGTGGA
GGATGGTCTTATCCGCGACATCACCTTGCCCAGTCTTATCCAATTCAGGG
ACTTCGCTAGCCAGGCCATCATGGATGTCATGTACTATCTCACCCCAAGG
TATCATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig38867:728..886+

>mRNA_H-paniculata_contig38867.10141.1 ID=mRNA_H-paniculata_contig38867.10141.1|Name=mRNA_H-paniculata_contig38867.10141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig38867:728..886+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGTTGTATGTGTAAAAAAATTACAGGTTCACGGCGATGAAGCAGTGGA
GGATGGTCTTATCCGCGACATCACCTTGCCCAGTCTTATCCAATTCAGGG
ACTTCGCTAGCCAGGCCATCATGGATGTCATGTACTATCTCACCCCAAGG
TATCATTAATTTGTTGTATGTGTAAAAAAATTACAGGTTCACGGCGATGA
AGCAGTGGAGGATGGTCTTATCCGCGACATCACCTTGCCCAGTCTTATCC
AATTCAGGGACTTCGCTAGCCAGGCCATCATGGATGTCATGTACTATCTC
ACCCCAAGGTATCATTAA
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