|
|
Homology
BLAST of mRNA_H-paniculata_contig1158.1013.1 vs. uniprot
Match: A0A6H5KWQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ4_9PHAE) HSP 1 Score: 120 bits (300), Expect = 2.160e-27 Identity = 100/230 (43.48%), Postives = 149/230 (64.78%), Query Frame = 1
Query: 4 AARVLRERHLGARRARQSSLQERESLTASEATRKARQELEEQENAERLALAEDQARNRLEALDRARMETEAATAVGRSMREEADRLLSDHRDRILEMESVLKDDALRQRTALETLLADKRKTAEAARANLSPLSMEAASDAATRANAADQAERAALERELKSKLAHIENDRKAFEICVEKIVASTQGAVGKSSERSREEAAAEWAAAAAQARRDELKGIHEREIAALKIQ 693
A+R LRER AR AR+++LQ++ESL+ASEA +KAR ELE+ E L ED +R+EA+ RA +E EAA S+REEADRLL++HR+R+ +++ +K DA RQ+T L+ LA +RK +A A P+S++AA+ AAT A++A++AER LER L + +++D + +E V+ I+ S + A S AAE A A + R++ L+ IHER I A++ Q
Sbjct: 1324 ASRALRERLQAARAAREATLQDKESLSASEAAKKARTELEDGEERAIEELMEDLRNDRVEAIGRANLEAEAAGTD--SLREEADRLLAEHRNRMAQLQEAMKVDAQRQQTNLQKRLAARRKGTDAVVAAAQPVSLQAAAKAATLADSAEEAERINLERSLLDEANRLQSDAEGYERSVQNILTSAEQAAA-SGVYGASLGAAE-AEMAQEERKESLRAIHERAIVAMEAQ 1549
BLAST of mRNA_H-paniculata_contig1158.1013.1 vs. uniprot
Match: D8LR26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR26_ECTSI) HSP 1 Score: 117 bits (293), Expect = 1.910e-26 Identity = 97/230 (42.17%), Postives = 145/230 (63.04%), Query Frame = 1
Query: 4 AARVLRERHLGARRARQSSLQERESLTASEATRKARQELEEQENAERLALAEDQARNRLEALDRARMETEAATAVGRSMREEADRLLSDHRDRILEMESVLKDDALRQRTALETLLADKRKTAEAARANLSPLSMEAASDAATRANAADQAERAALERELKSKLAHIENDRKAFEICVEKIVASTQGAVGKSSERSREEAAAEWAAAAAQARRDELKGIHEREIAALKIQ 693
A+R LRER AR AR+++LQ++ESL+ASEA RKAR ELE+ E L ED +R+EA+ RA +E EAA S+R EADRLL++HR+R+ +++ +K DA RQ+T L+ LA +RK +A A P+S++AA+ AAT A++A++AER LER L + +++D + +E V+ I+ S + A + AA A + R L+ IHER +AA++ Q
Sbjct: 4887 ASRALRERLQAARAAREATLQDKESLSASEAARKARTELEDGEERAIEELMEDLRNDRVEAIGRANLEAEAAGTD--SLRAEADRLLAEHRNRMAQLQEAMKVDAQRQKTNLQKRLAARRKGTDAVVAAAQPVSLQAAAKAATLADSAEEAERINLERSLLDEANRLQSDAEGYERSVQNILTSAEHAAASGVYGASPRAAE--AEMVHEERNQSLRAIHERAMAAMETQ 5112
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 128.3 |
| Seed ortholog evalue | 4.8e-27 |
| Seed eggNOG ortholog | 2880.D8LR26 |
| KEGG ko | ko:K16726,ko:K17751 |
| KEGG Pathway | ko04260,ko04261,ko05416,map04260,map04261,map05416 |
| Hectar predicted targeting category | mitochondrion |
| EggNOG free text desc. | translation initiation factor activity |
| EggNOG OGs | COG5022@1,KOG0161@2759,KOG1217@1,KOG1217@2759,KOG3529@1,KOG3529@2759 |
| COG Functional cat. | Z |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko03036,ko04812 |
| Exons | 5 |
| Model size | 694 |
| Cds size | 693 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1158.1013.1 >prot_H-paniculata_contig1158.1013.1 ID=prot_H-paniculata_contig1158.1013.1|Name=mRNA_H-paniculata_contig1158.1013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=231bp
RAARVLRERHLGARRARQSSLQERESLTASEATRKARQELEEQENAERLA
LAEDQARNRLEALDRARMETEAATAVGRSMREEADRLLSDHRDRILEMES
VLKDDALRQRTALETLLADKRKTAEAARANLSPLSMEAASDAATRANAAD
QAERAALERELKSKLAHIENDRKAFEICVEKIVASTQGAVGKSSERSREE
AAAEWAAAAAQARRDELKGIHEREIAALKIQ back to topmRNA from alignment at H-paniculata_contig1158:5180..8274+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1158.1013.1 ID=mRNA_H-paniculata_contig1158.1013.1|Name=mRNA_H-paniculata_contig1158.1013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3095bp|location=Sequence derived from alignment at H-paniculata_contig1158:5180..8274+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGCTGCCAGAGTCCTCCGGGAGCGCCACCTCGGTGCGAGAAGAGCACG
TCAATCGAGGTAGGGACTAGTTCCTAGGTCATCATACAAGGACGTGCCCA
GTTTGGTGTGTACTCCTTTGCTGCATACGATATTTTGCCTTCTCACTGCA
GAGAACAGCTATTGCAGGCAGCCAAGGTCCAACGTTTGACTTTTGAGCGG
GCCGAAACACTGGGTGACAGTATCATCGTGTCGTTTTTATGGGCGTAGTA
CGTTGGCTGGGACTCCAGAATCACTTGTTTTGCGCATACAAGCTTAGCCC
AACAAGAGAGAACAAAAACATTCCACGAGCATTTCTCACTTGGTGTTTGG
AGTTTGGATTTGAGATTTTGAGGGTAGGTGCATATCAAAATTTTGGAGGC
CTCTAGTGATAATTGCTGTTGATTTATTATTTTGTTCCGAATATAAATAC
GGATCTTTGAACCCCAAAATCATTCAAGAGCCATTATTTTCGGAATAAAA
AAGAAATCAAAAGGTAGTATCAATGGATCCCTCCGAAATATTGATGCAAA
ACTACCCTCAAAATTTCAGGTCCAACCTCCAAAAACCCAAGTGAGAAACG
CCCGTTTTGTAGAAGTATTACGTACGTCCTAATCCCATACAAAAAGGTAG
ATACTATGCCCCAATTTTACTTCAGCCATAAATTTGGAACGGTGGCGAGT
TGGGAGCCCAAATCGATATCACGGTTCTCGTTGTGGTGTCAGCAATACAC
ACCCATTTTGAGAACATTCAAGCATGACCCGGGCACATATGTAACATACT
TGACTTTTGTACCAACACGTTTGGAAAATAACCGCTATTAATAGTAGTCC
ATATGTCGTATCGTCATATACTTTGAAACGCTGAAAGTGACTGGATGGCC
GATCAGAGCGCGCGGCGCACTTCGTGGTACTTACATGGTTGCAGGCAGTC
CTAGGTTTGTGGTGGGTTTCGCTCTGGATCGTGACATTTGGCCTGTCGAA
CATTTTTAGTGTTTTTTGGTGGGCCCAGCTTGTATTCAGCGCTGAGAGAT
CCCGGCGCGTGCTGCGAGATGGACAAGGTGGGATGCGAGCTTTACAAAAC
ACGTTGTTCCTTTTTGCCCGTGGGTCTCCGTTTGCCTCTTCTCGTCTTCG
TTGGTAACAATGCCACAATCAGCTTGCAAGAAAGAGAATCTCTCACCGCT
TCGGAGGCGACGAGGAAGGCGCGGCAAGAGCTTGAAGAACAGGAGAATGC
AGAACGGCTTGCTCTGGTAGGCGCAGCAGCATTAGAAAAACCCTCATTTG
GTGTGAGCCTTAACCCTTATATGCACCCTTATCTGAAATAGTTTTTCGTA
TATTCGTGATGTAGGACTTATATTTTGGGTACAACTTAAATAGCGCATCT
CGAAGTAAAACTCTCAAGGACGTAAAGAAAAGGAGCCGGAAAATCTGAAC
ATTCGGTATCTTAAGTTGTATCGTGTATTGTGAAACAACGATTGAGAACA
GCGAGGTACCTCGAACGCTGCAGCGAGAATCTAGAGTCCAAACCCATCAT
TATTACCAGAACTCCTTCGCTGTGCTATATGTCCCTTTTTCCAATCGTTC
CTCAGTACGTGAACCCTTACCATTTGAGCAATAGCACCTACCGTTCCGAC
TCAGGCCGAGGATCAAGCTAGAAATCGCCTGGAAGCCTTGGATAGGGCGC
GGATGGAGACGGAAGCGGCCACGGCGGTGGGGCGTTCTATGCGAGAAGAG
GCTGATCGCCTGTTGTCGGACCACCGTGATCGAATACTTGAGATGGAAAG
TGTATTGAAGGTACCACCGTGTGTGTTAACCCATCAAAGAGATGTCCCGG
CACAGTTGCCGCATTCTGTGGCTTGACCAACAAGACTTACTCGACACAGC
TAAGCCTGCGGACGGAATAGCGGTTGGTGTCTATTTGTATCGCCTATGTA
ACTTCTTCGAGTTTCGCCATGCCTTCTCCTCTCGATATGCCTGCAGGGCG
GAACAAAGAAAGCAGGTAACTTACGCAAAGGCACTTGCGATGCTGTCGGT
ATGCAGTGCCGGAAATTATCCAGTTCCGCCCGTCACCGCGTTGCGATTGA
GGCACAAACCTGTGCGGAAACTATGCTCCTTTGTGAACAGAATTGACAGC
AATCGCTATTTTGTCCATACGCATATCCATGTACCCGTCTTCTGTTTTCG
ACGCCAGGATGATGCCCTGAGACAAAGGACGGCTCTCGAAACACTATTGG
CGGACAAAAGGAAAACGGCAGAGGCCGCCCGTGCCAATTTGTCGCCCCTC
TCTATGGAGGCCGCTAGTGATGCCGCAACCCGAGCCAACGCAGCTGACCA
AGCAGAGCGTGCCGCGCTCGAAAGGGAACTTAAAAGTAAACTCGCTCACA
TCGAAAATGATCGTAAGGCTTTCGAGATCTGTGTTGAGAAAATCGTGGCT
TCAACTCAGGGGGCCGTTGGTAAGTCGTCGGAGCGTTCAAGGGAAGAAGC
TGCAGCTGAGTGGGCGGCTGCAGCGGCCCAGGTGAAGAAAATTATTGGTG
TCTAGCCGAAGAGGGTGATCGTGTTTCACCTGCAGATAGTGCGCTTGAAA
AGCTCTCGCCTGGCAACCTAGTAATATGCTCAATCCACGACACAAAAGCA
ACGGGAGTAATACGACCTTAGTCCTACCAGTGAAAGCAACGCTAGGGATA
GACTTCCGCGCCAAATTTTCTATTCAATCCGGAGGCCCAATTTGCGAACG
GTACGTTTTCGAAAAACTCTCCAAGAGCTGGCGTTCGGGCCGTTGTTCTC
GGCAATTGCGTCCGCTGTGTTGTCGACAATTTCAGACGGGAGATCCATCC
CTGAAGCGCAGTTCGCATATGCATGATTTGCAGTACCTCTATTCGAGCGT
GCCACGTCTACCGCGTAAACACCGGTTTTATTTATCAAACATGGCGCGTC
CTCCCTTTCTATGAGACGGATTTCTTCCTAGTTCCGGTCTGCGCTAAGTG
ACGTTTACTTCCTTCCTTTTGCCCGACGGCCTAGGCGCGACGAGACGAAC
TGAAAGGCATACATGAGAGAGAGATTGCGGCGTTAAAGATACAGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig1158:5180..8274+ >mRNA_H-paniculata_contig1158.1013.1 ID=mRNA_H-paniculata_contig1158.1013.1|Name=mRNA_H-paniculata_contig1158.1013.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at H-paniculata_contig1158:5180..8274+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGCTGCCAGAGTCCTCCGGGAGCGCCACCTCGGTGCGAGAAGAGCACG
TCAATCGAGCGTGCTGCCAGAGTCCTCCGGGAGCGCCACCTCGGTGCGAG
AAGAGCACGTCAATCGAGCTTGCAAGAAAGAGAATCTCTCACCGCTTCGG
AGGCGACGAGGAAGGCGCGGCAAGAGCTTGAAGAACAGGAGAATGCAGAA
CGGCTTGCTCTGCTTGCAAGAAAGAGAATCTCTCACCGCTTCGGAGGCGA
CGAGGAAGGCGCGGCAAGAGCTTGAAGAACAGGAGAATGCAGAACGGCTT
GCTCTGGCCGAGGATCAAGCTAGAAATCGCCTGGAAGCCTTGGATAGGGC
GCGGATGGAGACGGAAGCGGCCACGGCGGTGGGGCGTTCTATGCGAGAAG
AGGCTGATCGCCTGTTGTCGGACCACCGTGATCGAATACTTGAGATGGAA
AGTGTATTGAAGGCCGAGGATCAAGCTAGAAATCGCCTGGAAGCCTTGGA
TAGGGCGCGGATGGAGACGGAAGCGGCCACGGCGGTGGGGCGTTCTATGC
GAGAAGAGGCTGATCGCCTGTTGTCGGACCACCGTGATCGAATACTTGAG
ATGGAAAGTGTATTGAAGGATGATGCCCTGAGACAAAGGACGGCTCTCGA
AACACTATTGGCGGACAAAAGGAAAACGGCAGAGGCCGCCCGTGCCAATT
TGTCGCCCCTCTCTATGGAGGCCGCTAGTGATGCCGCAACCCGAGCCAAC
GCAGCTGACCAAGCAGAGCGTGCCGCGCTCGAAAGGGAACTTAAAAGTAA
ACTCGCTCACATCGAAAATGATCGTAAGGCTTTCGAGATCTGTGTTGAGA
AAATCGTGGCTTCAACTCAGGGGGCCGTTGGTAAGTCGTCGGAGCGTTCA
AGGGAAGAAGCTGCAGCTGAGTGGGCGGCTGCAGCGGCCCAGGATGATGC
CCTGAGACAAAGGACGGCTCTCGAAACACTATTGGCGGACAAAAGGAAAA
CGGCAGAGGCCGCCCGTGCCAATTTGTCGCCCCTCTCTATGGAGGCCGCT
AGTGATGCCGCAACCCGAGCCAACGCAGCTGACCAAGCAGAGCGTGCCGC
GCTCGAAAGGGAACTTAAAAGTAAACTCGCTCACATCGAAAATGATCGTA
AGGCTTTCGAGATCTGTGTTGAGAAAATCGTGGCTTCAACTCAGGGGGCC
GTTGGTAAGTCGTCGGAGCGTTCAAGGGAAGAAGCTGCAGCTGAGTGGGC
GGCTGCAGCGGCCCAGGCGCGACGAGACGAACTGAAAGGCATACATGAGA
GAGAGATTGCGGCGTTAAAGATACAGGCGCGACGAGACGAACTGAAAGGC
ATACATGAGAGAGAGATTGCGGCGTTAAAGATACAG back to top
|