mRNA_H-paniculata_contig3883.10136.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3883.10136.1
Unique NamemRNA_H-paniculata_contig3883.10136.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3883.10136.1 vs. uniprot
Match: D8LN51_ECTSI (Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN51_ECTSI)

HSP 1 Score: 342 bits (878), Expect = 1.460e-105
Identity = 165/228 (72.37%), Postives = 184/228 (80.70%), Query Frame = 1 
Query:    1 QSLFPLGVWPSKSGES--FDVPMEWKTSALKKMENPPPYRKIKANLYLDTVQKGLVPLDEIPLCHCRVESGCDEDCINRQLLMECAPDRCPTLRDGWKHCRNSAIQTKAFPQTEIFRTLEGRGWGLRLAQENGAKAGTLLHEYLGEVIDIDECKERLGMAEKQ-------DFYFASLDGNLVLDAGPMGSEARFANHSCSPNCTLQKWSVLGETRVVLTAARDIACGE 657
            +SL PLG+WPS SGES  FD+  EWK S LK+ ENPPPYRK+KANLY D+  KGLVP+DEIPLC+CR E GCD  CINR LLMECAP RCPTLR   K+C N+AIQTK FP TE+FRT EGRGWGLRLA+E GA+AGTLLHEYLGEVI +DEC+ RL    ++       DFYFASLDGNLVLD GPMG EARFANHSCSPNC +QKWSVLGETRVVL AARDI+ GE
Sbjct:  224 KSLLPLGIWPS-SGESEAFDIAPEWKASLLKRYENPPPYRKLKANLYEDSSLKGLVPVDEIPLCNCRPEDGCDASCINRLLLMECAPGRCPTLRGASKYCNNNAIQTKTFPATEVFRTFEGRGWGLRLAEERGAEAGTLLHEYLGEVIMMDECRRRLRKVGRKGVEGSSGDFYFASLDGNLVLDGGPMGGEARFANHSCSPNCLMQKWSVLGETRVVLVAARDISVGE 450
[Close]
BLAST of mRNA_H-paniculata_contig3883.10136.1 vs. uniprot
Match: A0A835Z6U8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U8_9STRA)

HSP 1 Score: 244 bits (623), Expect = 7.760e-71
Identity = 122/223 (54.71%), Postives = 149/223 (66.82%), Query Frame = 1 
Query:   16 LGVWPSKS-GESFDVPMEWKTSALKKMENPPPYRKIKANLYLDTVQKGLVPLDEIPLCHCRVESGCDEDCINRQLLMECAPDRCPTLR---DGWKHCRNSAIQTKAFPQTEIFRTLEGRGWGLRLAQE-NGAKAGTLLHEYLGEVIDIDECKERLGMAEKQ----DFYFASLDGNLVLDAGPMGSEARFANHSCSPNCTLQKWSVLGETRVVLTAARDIACGE 657
            LG+WP  S  E +  P++     L+++   P Y+KI+ N Y D   KGLV   E   C C     C +DC+NR+L+ EC P RCPTLR   DG ++C NSAIQ + +P TE FRT +GRGWGLRL        AGTLL EY+GEVI +DECK RL    K+    DFYFASLDG L+LDAGPMG+EARFANHSC+PNC LQKWSV+GETRVV+ A R +  GE
Sbjct:  108 LGIWPDDSMAEPYLPPLDMLKERLRELLPEPDYKKIRTNQYPDAALKGLVAAKECSTCCCEPGGHCLDDCLNRRLMQECLPGRCPTLRGLTDGRRYCENSAIQERRYPPTEAFRTSDGRGWGLRLCTTAEPVTAGTLLKEYVGEVISVDECKRRLKQLGKRGKRGDFYFASLDGQLILDAGPMGNEARFANHSCAPNCELQKWSVMGETRVVMAAKRTLQPGE 330
[Close]
BLAST of mRNA_H-paniculata_contig3883.10136.1 vs. uniprot
Match: A0A4D9DD50_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD50_9STRA)

HSP 1 Score: 214 bits (546), Expect = 1.640e-60
Identity = 113/217 (52.07%), Postives = 141/217 (64.98%), Query Frame = 1 
Query:   28 PSKSGESFDVPMEWKTSALKKMENPPPYRKIKANLYLDTVQKGLVPL-----DEIPLCHCRVESG-CDEDCINRQLLMECAPDRCPTLRDGWKHCRNSAIQTKAFPQTEIFRTLEGRGWGLRLAQENGAKAGTLLHEYLGEVIDIDECKERL-GMAEKQDFYFASLDGNLVLDAGPMGSEARFANHSCSPNCTLQKWSVLGETRVVLTAARDIACGE 657
            P+     FD+P EW    L + E PP YR ++ NLY       L P      DE+PLC CR ++G CD  C+NRQL MEC   RCP+LRDG  +C N  IQ   FP TE+FRT +GRGW LR  +E   + GTLL EY GEV+ ++E + R+  M+  QD+YFA+L+G LVLDAGPMGSEARFANHSC+PNC LQKW   GE  ++L AAR +  GE
Sbjct:  133 PAMPPAEFDLPEEW--IRLVQSEPPPKYRLLRQNLYS---HPSLRPRTAGREDEVPLCSCRPDAGGCDHRCMNRQLFMECPVGRCPSLRDGELYCENMVIQQGQFPATEVFRT-QGRGWALRTREE--VEKGTLLIEYRGEVVTMEEAQTRMRSMSAGQDYYFAALEGELVLDAGPMGSEARFANHSCAPNCVLQKWRAGGEAHILLVAARRMGAGE 341
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BLAST of mRNA_H-paniculata_contig3883.10136.1 vs. uniprot
Match: UPI00201547BD (histone-lysine N-methyltransferase, H3 lysine-36 specific isoform X1 n=9 Tax=Alosa TaxID=34772 RepID=UPI00201547BD)

HSP 1 Score: 179 bits (453), Expect = 5.100e-48
Identity = 91/194 (46.91%), Postives = 118/194 (60.82%), Query Frame = 1 
Query:   94 ENPPPYRKIKANLYLDTVQKGLVPLDEIPLCHCRVES----GCDEDCINRQLLMECAPDRCPTLRDGWKHCRNSAIQTKAFPQTEIFRTLEGRGWGLRLAQENGAKAGTLLHEYLGEVIDIDECKERLGMAEKQD---FYFASLDGNLVLDAGPMGSEARFANHSCSPNCTLQKWSVLGETRVVLTAARDIACG 654
            + PPPYR IK N  +  VQ     L EIP C+C+       G D +CINR LL EC P  CP      +HC+N +   + + Q EIFRTL  RGWGLR   +   K G  + EY+GEVID +EC+ R+  A++ D   FY  +LD + ++DAGP G+EARF NHSC PNC  QKW+V G+TRV L A +D+  G
Sbjct: 1574 KKPPPYRHIKVNRPIGKVQIITADLSEIPRCNCKASDENPCGIDSECINRMLLYECHPQVCP----AGEHCQNQSFAKRQYSQVEIFRTLT-RGWGLRCCSD--IKKGAFVSEYVGEVIDEEECRARIKHAQENDIGNFYMLTLDKDRIIDAGPKGNEARFMNHSCQPNCETQKWTVNGDTRVGLFALKDVTAG 1760
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BLAST of mRNA_H-paniculata_contig3883.10136.1 vs. uniprot
Match: A0A665XAJ2_ECHNA (Nuclear receptor binding SET domain protein 1b n=4 Tax=Percomorphaceae TaxID=1489872 RepID=A0A665XAJ2_ECHNA)

HSP 1 Score: 175 bits (443), Expect = 6.020e-48
Identity = 93/192 (48.44%), Postives = 117/192 (60.94%), Query Frame = 1 
Query:  100 PPPYRKIKANLYLDTVQKGLVPLDEIPLCHCRV--ESGC--DEDCINRQLLMECAPDRCPTLRDGWKHCRNSAIQTKAFPQTEIFRTLEGRGWGLRLAQENGAKAGTLLHEYLGEVIDIDECKERLGMAEKQD---FYFASLDGNLVLDAGPMGSEARFANHSCSPNCTLQKWSVLGETRVVLTAARDIACG 654
            PPPY+ IK N  +  VQ     L EIP C+C+   ES C  D +CINR LL EC P  CP      + C N A   + + Q EIFRTL  RGWGLR   +   K G  + EY+GEVID +EC+ R+  A++ D   FY  +LD + ++DAGP G+EARF NHSC PNC  QKW+V G+TRV L A  D+A G
Sbjct:  223 PPPYKHIKVNRPIGKVQIFTADLSEIPRCNCKATDESPCGNDSECINRMLLYECHPQVCP----AGERCLNQAFTKRQYSQVEIFRTLS-RGWGLRCVHD--IKKGQFVSEYVGEVIDEEECRSRIRHAQENDICNFYMLTLDKDRIIDAGPKGNEARFMNHSCQPNCETQKWTVSGDTRVGLFALVDVAAG 407
[Close]
BLAST of mRNA_H-paniculata_contig3883.10136.1 vs. uniprot
Match: A0A8B9JRW4_ASTMX (Uncharacterized protein n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9JRW4_ASTMX)

HSP 1 Score: 172 bits (437), Expect = 7.060e-48
Identity = 92/194 (47.42%), Postives = 120/194 (61.86%), Query Frame = 1 
Query:   94 ENPPPYRKIKANLYLDTVQKGLVPLDEIPLCHCRV--ESGC--DEDCINRQLLMECAPDRCPTLRDGWKHCRNSAIQTKAFPQTEIFRTLEGRGWGLRLAQENGAKAGTLLHEYLGEVIDIDECKERLGMAEKQD---FYFASLDGNLVLDAGPMGSEARFANHSCSPNCTLQKWSVLGETRVVLTAARDIACG 654
            + PPPY+ IKAN  +  VQ     L EIP C+CR   ES C  D +CINR LL EC P  CP      + C+N     + + + EIFRTL  RGWGLR   +   + G  ++EY+GEVID +EC+ R+  A++ D   FY  +LD + ++DAGP G+EARF NHSC PNC  QKW+V G+TRV L A  DI+ G
Sbjct:   81 KKPPPYKHIKANRPIGKVQIITADLSEIPRCNCRATDESPCGMDSECINRMLLYECNPQVCP----AGEKCQNQRFLKREYSEVEIFRTLS-RGWGLRGCHD--IRKGDFVNEYVGEVIDEEECRARIRQAQENDIGNFYMLTLDKDRIIDAGPKGNEARFMNHSCQPNCETQKWTVNGDTRVGLFALVDISAG 267
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BLAST of mRNA_H-paniculata_contig3883.10136.1 vs. uniprot
Match: G3QC83_GASAC (Nuclear receptor binding SET domain protein 1b n=3 Tax=Eupercaria TaxID=1489922 RepID=G3QC83_GASAC)

HSP 1 Score: 175 bits (443), Expect = 1.010e-47
Identity = 93/192 (48.44%), Postives = 117/192 (60.94%), Query Frame = 1 
Query:  100 PPPYRKIKANLYLDTVQKGLVPLDEIPLCHCRV--ESGC--DEDCINRQLLMECAPDRCPTLRDGWKHCRNSAIQTKAFPQTEIFRTLEGRGWGLRLAQENGAKAGTLLHEYLGEVIDIDECKERLGMAEKQD---FYFASLDGNLVLDAGPMGSEARFANHSCSPNCTLQKWSVLGETRVVLTAARDIACG 654
            PPPY+ IK N  +  VQ     L EIP C+C+   ES C  D +CINR LL EC P  CP      + C N A   + + Q EIFRTL  RGWGLR A +   K G  + EY+GEVID +EC+ R+  A++ D   FY  +LD + ++DAGP G+EARF NH C PNC  QKW+V G+TRV L A  D+A G
Sbjct:  279 PPPYKHIKVNRPIGKVQIFTADLSEIPRCNCKAADESPCGMDSECINRMLLYECHPQVCP----AGERCLNQAFSKRQYSQVEIFRTLS-RGWGLRCAHD--IKKGQFVSEYVGEVIDEEECRSRIRHAQEHDICNFYMLTLDKDRIIDAGPKGNEARFMNHCCQPNCETQKWTVSGDTRVGLFALVDVAAG 463
[Close]
BLAST of mRNA_H-paniculata_contig3883.10136.1 vs. uniprot
Match: UPI0012EDA3D3 (histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific n=1 Tax=Anarrhichthys ocellatus TaxID=433405 RepID=UPI0012EDA3D3)

HSP 1 Score: 176 bits (446), Expect = 1.910e-47
Identity = 93/192 (48.44%), Postives = 117/192 (60.94%), Query Frame = 1 
Query:  100 PPPYRKIKANLYLDTVQKGLVPLDEIPLCHCRV--ESGC--DEDCINRQLLMECAPDRCPTLRDGWKHCRNSAIQTKAFPQTEIFRTLEGRGWGLRLAQENGAKAGTLLHEYLGEVIDIDECKERLGMAEKQD---FYFASLDGNLVLDAGPMGSEARFANHSCSPNCTLQKWSVLGETRVVLTAARDIACG 654
            PPPY+ IK N  +  VQ     L EIP C+C+   ES C  D +CINR LL EC P  CP      +HC N A   + + Q EIFRTL  RGWGLR   +   K G  + EY+GEVID +EC+ R+  A++ D   FY  +LD + ++DAGP G+EARF NH C PNC  QKW+V G+TRV L A  D+A G
Sbjct:  261 PPPYKHIKVNRPIGKVQIFTADLSEIPRCNCKATDESPCGMDSECINRMLLYECHPQVCP----AGEHCLNQAFSKRQYSQVEIFRTLS-RGWGLRCVHD--IKKGHFVSEYVGEVIDEEECRSRIRHAQENDICNFYMLTLDKDRIIDAGPKGNEARFMNHCCQPNCETQKWTVSGDTRVGLFALVDVAAG 445
[Close]
BLAST of mRNA_H-paniculata_contig3883.10136.1 vs. uniprot
Match: UPI001B3AE115 (histone-lysine N-methyltransferase, H3 lysine-36 specific isoform X1 n=2 Tax=Toxotes jaculatrix TaxID=941984 RepID=UPI001B3AE115)

HSP 1 Score: 177 bits (448), Expect = 2.430e-47
Identity = 95/192 (49.48%), Postives = 118/192 (61.46%), Query Frame = 1 
Query:  100 PPPYRKIKANLYLDTVQKGLVPLDEIPLCHCRV--ESGC--DEDCINRQLLMECAPDRCPTLRDGWKHCRNSAIQTKAFPQTEIFRTLEGRGWGLRLAQENGAKAGTLLHEYLGEVIDIDECKERLGMAEKQD---FYFASLDGNLVLDAGPMGSEARFANHSCSPNCTLQKWSVLGETRVVLTAARDIACG 654
            PPPY+ IK N  +  VQ     L EIP C+C+V  ES C  D +CINR LL EC P  CP      + C N A   + + Q EIFRTL  RGWGLR   +   K G  + EY+GEVID +EC+ R+  A++ D   FY  +LD + ++DAGP G+EARF NHSC PNC  QKW+V G+TRV L A  DIA G
Sbjct: 2060 PPPYKHIKVNRPIGKVQIFTADLSEIPRCNCKVTDESPCGMDSECINRMLLYECHPQVCP----AGERCLNQAFTKRQYSQVEIFRTLS-RGWGLRCVHD--IKKGQFVSEYVGEVIDEEECRSRIRHAQENDICNFYMLTLDKDRIIDAGPKGNEARFMNHSCQPNCETQKWTVSGDTRVGLFALVDIAAG 2244
[Close]
BLAST of mRNA_H-paniculata_contig3883.10136.1 vs. uniprot
Match: A0A667Z8T7_9TELE (Nuclear receptor binding SET domain protein 1b n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667Z8T7_9TELE)

HSP 1 Score: 173 bits (439), Expect = 3.000e-47
Identity = 93/192 (48.44%), Postives = 116/192 (60.42%), Query Frame = 1 
Query:  100 PPPYRKIKANLYLDTVQKGLVPLDEIPLCHCRV--ESGC--DEDCINRQLLMECAPDRCPTLRDGWKHCRNSAIQTKAFPQTEIFRTLEGRGWGLRLAQENGAKAGTLLHEYLGEVIDIDECKERLGMAEKQD---FYFASLDGNLVLDAGPMGSEARFANHSCSPNCTLQKWSVLGETRVVLTAARDIACG 654
            PPPYR IK N  +  VQ     L EIP C+C+   ES C  D +CINR LL EC P  CP      + C N A   + + Q EIFRTL  RGWGLR   +   K G  + EY+GE+ID +EC+ R+  A++ D   FY  +LD + ++DAGP G+EARF NHSC PNC  QKW+V G+TRV L A  DI  G
Sbjct:  229 PPPYRHIKVNRPIGKVQIITADLSEIPRCNCKATDESPCGMDSECINRMLLYECHPQVCP----AGERCLNQAFTKRQYSQVEIFRTLS-RGWGLRCVHD--IKKGEFVSEYVGEMIDEEECRSRIRHAQENDICNFYMLTLDKDRIIDAGPKGNEARFMNHSCQPNCETQKWTVSGDTRVGLFALVDITAG 413
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3883.10136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN51_ECTSI1.460e-10572.37Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A835Z6U8_9STRA7.760e-7154.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9DD50_9STRA1.640e-6052.07Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
UPI00201547BD5.100e-4846.91histone-lysine N-methyltransferase, H3 lysine-36 s... [more]
A0A665XAJ2_ECHNA6.020e-4848.44Nuclear receptor binding SET domain protein 1b n=4... [more]
A0A8B9JRW4_ASTMX7.060e-4847.42Uncharacterized protein n=2 Tax=Astyanax mexicanus... [more]
G3QC83_GASAC1.010e-4748.44Nuclear receptor binding SET domain protein 1b n=3... [more]
UPI0012EDA3D31.910e-4748.44histone-lysine N-methyltransferase, H3 lysine-36 a... [more]
UPI001B3AE1152.430e-4749.48histone-lysine N-methyltransferase, H3 lysine-36 s... [more]
A0A667Z8T7_9TELE3.000e-4748.44Nuclear receptor binding SET domain protein 1b n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3883contigH-paniculata_contig3883:1550..8497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score341.7
Seed ortholog evalue2.6e-91
Seed eggNOG ortholog2880.D8LN51
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K06101,ko:K07117,ko:K11423,ko:K11424,ko:K11728
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko05202,map00310,map05202
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000803,GO:0000805,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0007530,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009892,GO:0009987,GO:0010452,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016278,GO:0016279,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0018992,GO:0019222,GO:0019538,GO:0022414,GO:0030849,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0036211,GO:0040029,GO:0042054,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046975,GO:0048519,GO:0048856,GO:0050789,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0140096,GO:1901564
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1081@2759,KOG1632@1,KOG1632@2759
Ec32 ortholog descriptionZinc finger and SET domain protein
Ec32 orthologEc-05_003500.1
EC2.1.1.43
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons5
Model size666
Cds size666
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3883.10136.1prot_H-paniculata_contig3883.10136.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3883 1550..8497 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930191.0583599-CDS-H-paniculata_contig3883:1549..16861622930191.0583599-CDS-H-paniculata_contig3883:1549..1686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3883 1550..1686 -
1691481184.9759219-CDS-H-paniculata_contig3883:1549..16861691481184.9759219-CDS-H-paniculata_contig3883:1549..1686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3883 1550..1686 -
1622930191.0834177-CDS-H-paniculata_contig3883:3801..39941622930191.0834177-CDS-H-paniculata_contig3883:3801..3994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3883 3802..3994 -
1691481184.9890215-CDS-H-paniculata_contig3883:3801..39941691481184.9890215-CDS-H-paniculata_contig3883:3801..3994Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3883 3802..3994 -
1622930191.1064243-CDS-H-paniculata_contig3883:6791..69001622930191.1064243-CDS-H-paniculata_contig3883:6791..6900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3883 6792..6900 -
1691481184.998054-CDS-H-paniculata_contig3883:6791..69001691481184.998054-CDS-H-paniculata_contig3883:6791..6900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3883 6792..6900 -
1622930191.1194756-CDS-H-paniculata_contig3883:7445..75491622930191.1194756-CDS-H-paniculata_contig3883:7445..7549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3883 7446..7549 -
1691481185.0072172-CDS-H-paniculata_contig3883:7445..75491691481185.0072172-CDS-H-paniculata_contig3883:7445..7549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3883 7446..7549 -
1622930191.1304655-CDS-H-paniculata_contig3883:8374..84971622930191.1304655-CDS-H-paniculata_contig3883:8374..8497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3883 8375..8497 -
1691481185.0167031-CDS-H-paniculata_contig3883:8374..84971691481185.0167031-CDS-H-paniculata_contig3883:8374..8497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3883 8375..8497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3883.10136.1

>prot_H-paniculata_contig3883.10136.1 ID=prot_H-paniculata_contig3883.10136.1|Name=mRNA_H-paniculata_contig3883.10136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=222bp
QSLFPLGVWPSKSGESFDVPMEWKTSALKKMENPPPYRKIKANLYLDTVQ
KGLVPLDEIPLCHCRVESGCDEDCINRQLLMECAPDRCPTLRDGWKHCRN
SAIQTKAFPQTEIFRTLEGRGWGLRLAQENGAKAGTLLHEYLGEVIDIDE
CKERLGMAEKQDFYFASLDGNLVLDAGPMGSEARFANHSCSPNCTLQKWS
VLGETRVVLTAARDIACGEVS*
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mRNA from alignment at H-paniculata_contig3883:1550..8497-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3883.10136.1 ID=mRNA_H-paniculata_contig3883.10136.1|Name=mRNA_H-paniculata_contig3883.10136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6948bp|location=Sequence derived from alignment at H-paniculata_contig3883:1550..8497- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTCGCTCTTTCCCCTTGGAGTATGGCCTTCCAAATCCGGGGAGAGCTT
CGATGTGCCCATGGAGTGGAAGACCAGCGCGTTGAAGAAAATGGAGAATC
CCCCACCGTACCGCAAGATTAAGGTCAGACTTGAAGTAGTAACGTAGTGC
AGCCAGTCAAATCGTTTTTTTTTTTTTTTTTATTCCTTTTTGAAGTCGAA
ATTTGATTCCTTTTTGACGCCTTTTATTAATAATAGTGTACATGTATTTA
CATGTATTTACATGCCAAACAAAAAAGTGACATACGCTGTGCGAAGGGAT
CGCTGCTCTCGCACTGTTGCAGATGATGTAGTGTTCAACCAACGGAACTT
ACTTGAGATACAGAGTAGTCCGACATCGAAGATCACACCACTAACCTCCT
TGTGTGTAATGGTACCATGTGCTTCCTCTGTGCACCATAAGGAAAGGCGT
TTACGATTTTGGACACTTGACCTACGATTTCATTTTTTTATTTTTTATGT
TTATATATGTTATATATATTTCCTACATGTTTTTTGGGTTGCACCGTGTG
CGCGCGATGGAAACCAATTACAGTAGACCAAAGAAAGACGAAGTTAAATC
AGTCATTGAATTTTCACAAGGTGACAAAAACATACAAAATACACCTGATT
ACATGGATCGCCTCTCTAATTGCCATTTTTCAGCATATATATATATATAT
ATATATATATATATATGTACAACGCCATGTTATTGCGCATTTCGAATAAA
AAATGAAATCAAGTTCTGAAATACAATTTTCATGTGTGGATGAGTGAGCC
CCGTAACAGGGATTGAGGTATTCGCTCTCTTCGTATACACTGTTTTTTTT
TTTTCATGTCTGTTGTGCGTTTTGTGACGGCAACGCTGATGCCAATGCCA
ATGCCAATGCCAATGCCGACGTCGATGCTGATGCTAATGCTGATACAGGC
TAACCTGTACTTGGACACGGTGCAGAAGGGGTTGGTGCCGCTGGACGAGA
TCCCTTTGTGCCACTGCAGGGTCGAGTCCGGCTGCGACGAAGATTGTATC
AAGTGAGTAGTCGCCGAGTCATTCTACGTAAGACATTTGTCATTGGATAA
GGGCGGGGGGAGGGAGCAGGTAGCCATGTTAAGGTTATGAAGCTGACTTT
AATCTGCACGTACTGATGTTAAGGTTACGAGCTAAATTAAATCAATAAGG
GGTCAATGAAGTCGCTTTTTGAAGCATGACACTTATCCTGGGGAACACTG
AAAACTCTCTCTTCCAATGAAAGAAAAGCCTGCCTTCAGTGTCTCGAGTT
TACAGAATCGCGCTTGAAACACTCGATGTTCTCAGCAGTCATGCCGGGGT
TCTACGAGGCAATCAATCTTTGCCCCAACGTAGTGGGTTCCATCCTGGTG
CCGGGGTACAAACCCTCTCCCCGACACGTGACTCCCCGCCCTTAGACTTG
GAGAATACGGCAGAGACAACAGGCGTCCGAAAATAGCTGATTTGCTCTTT
AAGTTTTCCCATTGAAACTCGTAGATGAACTGGACGGCGTGTAATTGCTG
CTTTTTCCTGGCCGATACAATGTACCGCGTTTTGTGCCATGTTCCAGCCG
GCAGCTGCTCATGGAGTGTGCGCCTGACCGCTGTCCCACTCTACGTGATG
GCTGGAAGCACTGCAGAAACAGCGCGATACAGACGAAAGCATTTCCGCAG
ACTGAGGTGAATTTGATGTGAAGGAGGAGGTAGTTCGTTCTGTCTACAGT
AGTAAAATTTCCTTGAATTATTTCACAGCTCGGACGAAGGTTTGATTTTT
CAGGTAATCAACACGCAACGGAGCCATCATCTCTTCGTGCTCCAAGGTAG
AAATAGATGTGGAGGTGATGCTGGTACTCAATAGTCGAATACTCCTCGAA
GATGTGCAGGATATCCATGCTCTCGGTTTGTGGTTTCGGAAGGCATCAGA
TATCCTCGTGCTGGTATAGTTCCGAAACCCGTGACTCCGAAACCCGTGAC
ATCCTTTATCGACGGATGAAGGACGTTCGTCCGAGCTGTGAAACGTTTCT
TGATTTGATTGATTGATTGATTTGAGTGATGTGAGTGATTTGAGTGATTT
GAGTGATTGAGTTCGATTTCGATTTCGATTTCGATTTCGATTTGATTTCG
ATTTGATTTCGATTTGATTTCGATTTGACAGCAGCAACTCCATGTCTGAT
GAAAATAAACAAACAAAGCGAACGTACGTCTTGACAAAAAAATTCTTCCG
TGAGTTTATGCCTCCCCCCGCCATTTTTTGTTTTTTGTTCTTATTTGATG
CATTGAAAAAAAAAAAAAATGTATTCACGATTCGAAAGTATTCGCCTGAG
TTTCAGAATGAGCGGACACATAGAATTAAGTACTCTGCCCTGTTATTCGA
TTTACAACTATTATTAATAGTCGTGGGTGGTCCGGGGGCACATAGAATAA
ATACATGAGCTCATTCAAAAACTCTGGCGAATACTTTCAGCTTTTTTGTG
AGAACCATTCGCAGGTATTCGTGTCTATCTGTCCGGGGGGTTAAATTATT
TCTAAGGCAAAATTTTACGCGGCGTGTATGTGAATGTAAATAACTCTTAC
ATCTGTATAATTTCGACTTGGTTCTGTAGAGCTTAAAGCGAATCGTAAGT
TCCTGACACGACTGGCCCATCTTCGGCAACAACGTCTCGCTGCCACAAAA
ATCGTTTCCACAATCCGTCATATTTCGTAATTTCTCTAAAGTTTCAAAGT
TTGAAAACGAGATCAATTTTTTTTTTGCATTACAGCCCAATCTCGGATCG
AGATGGACTGGCGTTCGGGACCTGGAGCTCACTAGTAGCTGTAGAGCTAC
GGGACCAAATTAATATTTCACAAATACATATATATATATATATATATATA
TATATATATTCCCAAACACTATGATTTTGCATTTGGCATATATTTTCCAC
GAAGTAAACACCGGTTGTCTATTTTTTTATTGGATCATGTTTTATCGTAA
AGAAGGCCAAAATGTCACCTCTTGGCGTTTGTTGTGTGAGTGCCTAGATG
ACCGGAACACCTTTTGATGTATCGCACGTTCTGATATCTATATATATATA
TATTTTTTTTAACTCAATTTTTCTCGACAAGGAGTGTGCTAGATCATGAC
ACTGATAGCGGTATCGTCGGAAAGATTTCGTGAAGATATTTCGATAGACC
TGATGTTTCGGCAGTGTTATTGGATAGGATATTTTGGTTCTTGTTGGGGA
AAAATGGGATTAAAAAAACAATCAAACCAAAAAACATATATATATTAATA
TCGTTAAAAGTTGTTACGGTATGACCTTATCATACGGAAGTCAGTTACAA
GCAATCGGATGGATGGCTTTCGGTCAACCATTTGTCCTCCGAACCCCTGT
TTTTGATTCAATTTTGCCGATGGATGTATGAAACCTCAACATATGTTCAG
TGACTTCCTCTTCACTTTCTCTTGGCGTGTAGGTACATCGTTTCGCTTAC
AAAAAGATCGCCTGTCCACGCCTCGAACATGACCAAATGAATAGCTTGCA
CCGGAGAAGGTTGGGTCACGTCAGTCGATGAAGTGGGCAACATACACACC
GTCATGGGGGGTAATGGAAGCAGGACAGCCTTAAGCTCCTTCCCTCACAA
CGCTTCCGAGTGGTACATACAGAGGGTGTACACTCTGGGGTGGAAAGGAA
AAGGACAGTCATGGCTACGCGCGTACAATCCATCTTTTTGCTATACTGTG
TGAGAAATATTGAAGCAATAGCCGTTGGACGGCGTTGGAATGACTTTCAC
GGGAGACTCAAGGCTCTGTCGGATGTCGCAAAGAGTCGTGCGAAGGGTAT
GCCGTAGTTGTCGAAGTGTGTTTGTTGGTGAAGAATATTCTTGAGCCCTC
TCTGGGGTTTGTCGATGTCCGATTAGTCGTGCTTTGGGTGCTTTCACTGT
ACTCTCTGATTGATTTCACGTGTTTGGTTCGCATTTGTCATTGTCGTGTT
TGATTCGTAAGGTAATCATTAACACTATCCCCAAGTTCCGTATATATATA
AAAGTCGCGTTCGGTGGAATTGTGAATATCTATCGACGACGGACAGACTC
GGCTAGTTCGTTGGAATATCCAACAACAACAGCACCAGCAACAACAACAA
GACCAATCTTTCACGATCTATATCTTTCACGACTCAAACCTTTCGCGACT
CAAACCTTTCGCGACTCAACATTTTCACGATTCAAACCTTTCGCGACTCA
AACCTTTCACGACTCAAACCTTTCACGATTCAAACCTTTCACGACTCAAA
CCTTTCGTGACTCAAAATTTTCACGACTCAAAATTTTCACGACTCAAACC
TTTCACGATTCAAAATTTTCATGACTTAAAACACCCAAGCCCAAGGACCT
CACCTGACCACCTTCTCCCCAACTACACACGTAATACATGGAACACCACT
CCTACACTCCCCTCCCCCTCCACGGCCACCCCCATACCACTTGATATCAT
CAGATATTCCGCACCCTGGAAGGCCGCGGTTGGGGTTTGAGGCTAGCTCA
AGAGAACGGGGCGAAGGCTGGGACGCTGCTGCACGAGTACCTTGGCGAAG
TAATCGACATCGACGAGTGTAAGGAGAGGCTAGGCATGGCGGAAAAGCAA
GATTTCTATTTCGCCTCTCTCGACGGAAATCTGGTGCTCGATGCGGGTAA
GAGAGCTGAACTTATTTTTATGTCGTATGTATTAATATATTGAGTACAGT
GGAACATGACAAGTGTGTACGAGTTACTATAGGACCTATTGACTGTTTTT
TTTATATTAGCCCACCCTATGGGCACCGGCGAAATGAGTCCCTGAAAAAG
AAAAACGATGAAACCGCGGAGAGAAAAGGGGAGGTCCGGAACAAACGTGT
AGTATGATTATTTTAAATGCGTAGCTCGCGGCCCCGATCCCTTTTTTATC
TGCACGGAGGCGTCGTGTGTGTGTTCAAAATTTCGTGCTGGGCTCGATTC
TCAGGCTAGTTTTTTTTTTTTTTTGTGGAAATTGAACAGAGTCTAGTGCC
GTAGGGGTTGGTGTTTCGTTTAGTGGAGTGGAATATGGCAAGTGTACACG
AGTACCATAGGGCCTTTTGATTGGTCGGTTGTTTAAAGAGAGGTCATCCT
ACCCCCCCCCCCCTGCACTCCATGTTATGGGTGTTCTTGTTTACTGGCTA
TGTGTGGGTAGGTGCTAAATAGTTGGGGAATTTTAGTTTGGGGACTGACT
CGCTGAGGGTTCAAAGGAGACGGTTGTACGTAATGCAGCTAATTGCCCAC
CTGCTTTTTGTACACGGTGTCGATTCCGTCCATTGTATTTTTGAGGGCTT
TCATCGGTCTGGCGCGTACAGTGCGGTGCAGAGCGGTGGGTCCATTTCTT
TTCGTGTGCAAGAACTAATGATGAATTGCTTGGATGCTGTGTCGATTAAA
CATGTGAGTCTTTTATCTGCTTGAACACCAGATTCCCCGCGGAGCGGAGC
AAACACCAACGAGTGCACTCTCCGGACGGGTACGAATACTGGGAGCAATC
TAGACGAATGTTGAAAAATATTCTTCCGCCCGAAGTTGTAGATTCAGCAC
GTGTATTCACTATTTCATGTGCCTCGGAAGGACCATCTAAGCACGACTGT
TCTGAATACAATAATAGTGAAAAAGAAGATCAGAGGTGAACCAAGCTGTA
TATTCTGTGCGCTACCCCCCGCACATTTCGGAAACTCGGGCGTTTAGTTT
GTTTGTTTGTTTGGTTTTTCCATTTTTATCGCAAATACTTTAAACGTTCC
TATTTTTTCCTGAAAAACTTATTAGCGCAAGATAATAAACGCTGAGAAAT
CTATATATCACAAAAGAAGTATCTCGGGTTCTATTGCATCACCCAAGTTA
GTTCAGCCCGGCTGTCGTTCTTTGCGTGCGTTCTCCTTAGCCCTGCTGGG
GGCAAAACAGAAGTAACAGCTAGCAAAGCGTTGGCGATTTTTGGGCGTGA
CTTCACTAGCGCGGGAACGTGAACCAGTCCAACGTGATCTATCACGCGTT
GCGGTCAGAAATGAAAAGCACTCACCAGAGACAGTAGATTAGGTGTAGCA
GCCAAAGGTGTAGGTGATGCAATTACTGGAACACCCTTTGATATCGCACC
CACCCTCCTGATATATATATGTATATATTTTTTTTCGAACTCGATCTTCT
CGACGACGACGGTGGTCATGACATCGATAGCGGTTTTGTTGGAAAGATCT
CGTTGAGATATTTTGGATAAACCTGATGTTTTGGCAGTGCAAGCTCTTTC
TTTTCGAGAAAATCGGGTTTGGAAAATAACATGAGGTCATGCGAAATCAA
AGGATGTTCACGGAATATATCTTATCGTACGGTACCTCGGGGAGCAGTTG
CCCCGTTAGATCATGTATTGGTCTCCTGCTTCTGTCGTTGGCCTCAACAG
TCGAGGCCTGTAGATTGTGCGGAGCCTCGTCGGTATGCAAATGATATCGA
GGTAAAAAATGTGACTAATTGCATCCCCCCTCCCCCCGTCGGATATTGTG
TATCCGTTGAAATTGTCCGGTTTCCTGTCGTGATTCCGCTCCGCTACTGT
CATATTATGGAGGCTATTTATGTTGTTGCCGCATAACGTGGCAAATATTG
AGCTACCACTAGAGTTTTTCTTCTCCGATTGCTGTATTTGATCAAACAGA
TATATGACGGGGGAAAAATCCTTTGCCTTGTCTTGCCCTACTGCGCTCTG
CGTTGCGTCACTTTCCTCTGCTTCTTGTGTGTGTGTGTTGTGTGTGTGTG
TGTGATTTCAGGTCCGATGGGAAGCGAGGCGCGGTTCGCTAATCATAGCT
GCTCTCCCAACTGCACCCTCCAGAAATGGAGCGTCCTGGGCGAGACACGG
GTCGTGCTTACCGCTGCAAGGGACATAGCGTGTGGAGAGGTGAGTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig3883:1550..8497-

>mRNA_H-paniculata_contig3883.10136.1 ID=mRNA_H-paniculata_contig3883.10136.1|Name=mRNA_H-paniculata_contig3883.10136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1332bp|location=Sequence derived from alignment at H-paniculata_contig3883:1550..8497- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTCGCTCTTTCCCCTTGGAGTATGGCCTTCCAAATCCGGGGAGAGCTT
CGATGTGCCCATGGAGTGGAAGACCAGCGCGTTGAAGAAAATGGAGAATC
CCCCACCGTACCGCAAGATTAAGCAGTCGCTCTTTCCCCTTGGAGTATGG
CCTTCCAAATCCGGGGAGAGCTTCGATGTGCCCATGGAGTGGAAGACCAG
CGCGTTGAAGAAAATGGAGAATCCCCCACCGTACCGCAAGATTAAGGCTA
ACCTGTACTTGGACACGGTGCAGAAGGGGTTGGTGCCGCTGGACGAGATC
CCTTTGTGCCACTGCAGGGTCGAGTCCGGCTGCGACGAAGATTGTATCAA
GCTAACCTGTACTTGGACACGGTGCAGAAGGGGTTGGTGCCGCTGGACGA
GATCCCTTTGTGCCACTGCAGGGTCGAGTCCGGCTGCGACGAAGATTGTA
TCAACCGGCAGCTGCTCATGGAGTGTGCGCCTGACCGCTGTCCCACTCTA
CGTGATGGCTGGAAGCACTGCAGAAACAGCGCGATACAGACGAAAGCATT
TCCGCAGACTGAGCCGGCAGCTGCTCATGGAGTGTGCGCCTGACCGCTGT
CCCACTCTACGTGATGGCTGGAAGCACTGCAGAAACAGCGCGATACAGAC
GAAAGCATTTCCGCAGACTGAGATATTCCGCACCCTGGAAGGCCGCGGTT
GGGGTTTGAGGCTAGCTCAAGAGAACGGGGCGAAGGCTGGGACGCTGCTG
CACGAGTACCTTGGCGAAGTAATCGACATCGACGAGTGTAAGGAGAGGCT
AGGCATGGCGGAAAAGCAAGATTTCTATTTCGCCTCTCTCGACGGAAATC
TGGTGCTCGATGCGGATATTCCGCACCCTGGAAGGCCGCGGTTGGGGTTT
GAGGCTAGCTCAAGAGAACGGGGCGAAGGCTGGGACGCTGCTGCACGAGT
ACCTTGGCGAAGTAATCGACATCGACGAGTGTAAGGAGAGGCTAGGCATG
GCGGAAAAGCAAGATTTCTATTTCGCCTCTCTCGACGGAAATCTGGTGCT
CGATGCGGGTCCGATGGGAAGCGAGGCGCGGTTCGCTAATCATAGCTGCT
CTCCCAACTGCACCCTCCAGAAATGGAGCGTCCTGGGCGAGACACGGGTC
GTGCTTACCGCTGCAAGGGACATAGCGTGTGGAGAGGTGAGTTAGGTCCG
ATGGGAAGCGAGGCGCGGTTCGCTAATCATAGCTGCTCTCCCAACTGCAC
CCTCCAGAAATGGAGCGTCCTGGGCGAGACACGGGTCGTGCTTACCGCTG
CAAGGGACATAGCGTGTGGAGAGGTGAGTTAG
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