mRNA_H-paniculata_contig3880.10130.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3880.10130.1
Unique NamemRNA_H-paniculata_contig3880.10130.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3880.10130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3880contigH-paniculata_contig3880:2111..2953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size664
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3880.10130.1prot_H-paniculata_contig3880.10130.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3880 2268..2848 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930190.125321-UTR-H-paniculata_contig3880:2110..22671622930190.125321-UTR-H-paniculata_contig3880:2110..2267Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3880 2111..2267 +
1691481184.5167172-UTR-H-paniculata_contig3880:2110..22671691481184.5167172-UTR-H-paniculata_contig3880:2110..2267Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3880 2111..2267 +
1622930190.1809247-UTR-H-paniculata_contig3880:2848..29531622930190.1809247-UTR-H-paniculata_contig3880:2848..2953Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3880 2849..2953 +
1691481184.5562782-UTR-H-paniculata_contig3880:2848..29531691481184.5562782-UTR-H-paniculata_contig3880:2848..2953Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3880 2849..2953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930190.1439657-CDS-H-paniculata_contig3880:2267..22971622930190.1439657-CDS-H-paniculata_contig3880:2267..2297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3880 2268..2297 +
1691481184.5326908-CDS-H-paniculata_contig3880:2267..22971691481184.5326908-CDS-H-paniculata_contig3880:2267..2297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3880 2268..2297 +
1622930190.1614776-CDS-H-paniculata_contig3880:2476..28481622930190.1614776-CDS-H-paniculata_contig3880:2476..2848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3880 2477..2848 +
1691481184.544741-CDS-H-paniculata_contig3880:2476..28481691481184.544741-CDS-H-paniculata_contig3880:2476..2848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3880 2477..2848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3880.10130.1

>prot_H-paniculata_contig3880.10130.1 ID=prot_H-paniculata_contig3880.10130.1|Name=mRNA_H-paniculata_contig3880.10130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
MCITWSALLIIIYASLGPTLLDAISHHIFDPKDTKEHKVYNIKPTNDTRL
VLELCTVLYNISNMVRIFYAFDLCLPISQPCGKMTLKRRPPNCSRANGQK
LGYDERCAPLIQRSSHFIKHVLILHFRFCARGN*
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mRNA from alignment at H-paniculata_contig3880:2111..2953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3880.10130.1 ID=mRNA_H-paniculata_contig3880.10130.1|Name=mRNA_H-paniculata_contig3880.10130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=843bp|location=Sequence derived from alignment at H-paniculata_contig3880:2111..2953+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTTTAGTACAGCACCTTGAAACGCGAAAGGTGATCAAGACACCACAAA
TGACTGTTATAAGGAATACGGAAAACATTGGGAGGTAGTGGGCGGACCAT
CAGCCGTATACAAACGGTCATGTTTTCTTCACTGTGAAGTCCGACAATGT
AGATAATATGTGCATCACTTGGTCTGCGCTGTTGATTGTATTGGAGTGCT
TGAACCCTCTCTAGTACAGCACCTTGAAACGCGAAAGGTGATCCATCAAG
ACACCACACATGATAATGTTACAAGGAATACGGAAAACATTGGAAGGTGG
TGGGCGGACCTTCAGCCGTATACAAACGGTCATATTTTCTTCACTCTGTG
AAGTCCGACAATGTAGATAATATATGCATCACTTGGCCCCACCCTTCTCG
ATGCTATATCGCATCACATCTTTGACCCAAAAGACACGAAGGAACATAAA
GTATACAACATCAAGCCCACAAATGACACTCGACTCGTACTTGAGTTGTG
CACTGTTTTATACAATATTTCGAACATGGTGCGCATATTTTACGCTTTCG
ATCTTTGTCTACCTATTAGTCAGCCATGTGGAAAGATGACACTCAAAAGG
CGACCTCCAAACTGTTCAAGAGCGAACGGGCAAAAATTGGGGTATGACGA
AAGATGCGCACCTTTAATTCAGCGGTCCTCACATTTTATAAAACATGTGC
TAATCCTTCACTTTCGTTTCTGTGCGCGGGGTAACTGAAAGGGCATCATT
GCTCAACAAACCATACCGTATCGAAAAAACGTTCAAGTACCACACAGGAT
AACAGCTGGGCGTCTTCACACAAAATAATATGGTGTTCCTGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig3880:2111..2953+

>mRNA_H-paniculata_contig3880.10130.1 ID=mRNA_H-paniculata_contig3880.10130.1|Name=mRNA_H-paniculata_contig3880.10130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig3880:2111..2953+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCATCACTTGGTCTGCGCTGTTGATTATGTGCATCACTTGGTCTGC
GCTGTTGATTATAATATATGCATCACTTGGCCCCACCCTTCTCGATGCTA
TATCGCATCACATCTTTGACCCAAAAGACACGAAGGAACATAAAGTATAC
AACATCAAGCCCACAAATGACACTCGACTCGTACTTGAGTTGTGCACTGT
TTTATACAATATTTCGAACATGGTGCGCATATTTTACGCTTTCGATCTTT
GTCTACCTATTAGTCAGCCATGTGGAAAGATGACACTCAAAAGGCGACCT
CCAAACTGTTCAAGAGCGAACGGGCAAAAATTGGGGTATGACGAAAGATG
CGCACCTTTAATTCAGCGGTCCTCACATTTTATAAAACATGTGCTAATCC
TTCACTTTCGTTTCTGTGCGCGGGGTAACTGAATAATATATGCATCACTT
GGCCCCACCCTTCTCGATGCTATATCGCATCACATCTTTGACCCAAAAGA
CACGAAGGAACATAAAGTATACAACATCAAGCCCACAAATGACACTCGAC
TCGTACTTGAGTTGTGCACTGTTTTATACAATATTTCGAACATGGTGCGC
ATATTTTACGCTTTCGATCTTTGTCTACCTATTAGTCAGCCATGTGGAAA
GATGACACTCAAAAGGCGACCTCCAAACTGTTCAAGAGCGAACGGGCAAA
AATTGGGGTATGACGAAAGATGCGCACCTTTAATTCAGCGGTCCTCACAT
TTTATAAAACATGTGCTAATCCTTCACTTTCGTTTCTGTGCGCGGGGTAA
CTGA
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