mRNA_H-paniculata_contig38791.10128.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38791.10128.1
Unique NamemRNA_H-paniculata_contig38791.10128.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig38791.10128.1 vs. uniprot
Match: A0A7S1HPR5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis cordata TaxID=118079 RepID=A0A7S1HPR5_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 1.490e-6
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 3 
Query:  195 QWLRENGCAWNETTCSSAAEGGHLQVL 275
            +WLRENGC WNE TCS AAEGGHL+VL
Sbjct:    2 KWLRENGCLWNEGTCSDAAEGGHLEVL 28
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BLAST of mRNA_H-paniculata_contig38791.10128.1 vs. uniprot
Match: A0A7S2S7K5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7K5_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.630e-6
Identity = 21/28 (75.00%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:    4 AAEEGHLHILQWARANGCPWNEWTCWAA 87
            AAE GHL +LQWA A GCPWNE+TCW A
Sbjct:    1 AAEGGHLEVLQWASAQGCPWNEYTCWQA 28
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BLAST of mRNA_H-paniculata_contig38791.10128.1 vs. uniprot
Match: A0A285Q2D9_9VIRU (Ankyrin repeat n=1 Tax=Cedratvirus lausannensis TaxID=2023205 RepID=A0A285Q2D9_9VIRU)

HSP 1 Score: 53.5 bits (127), Expect = 1.920e-6
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 1 
Query:    7 AEEGHLHILQWARANGCPWNEWTCWAAVK 93
            AE GHL +LQWARANGC W+EWTC  A K
Sbjct:   20 AENGHLKVLQWARANGCEWDEWTCINAAK 48
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BLAST of mRNA_H-paniculata_contig38791.10128.1 vs. uniprot
Match: A0A6G8MYC0_9VIRU (Ankyrin repeat-containing protein n=1 Tax=Cedratvirus kamchatka TaxID=2716914 RepID=A0A6G8MYC0_9VIRU)

HSP 1 Score: 53.1 bits (126), Expect = 2.500e-5
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:    1 AAAEEGHLHILQWARANGCPWNEWT 75
            AAA+ GHL IL+WARANGCPWN+WT
Sbjct:   89 AAAKNGHLEILKWARANGCPWNKWT 113
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38791.10128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S1HPR5_9EUKA1.490e-681.48Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A7S2S7K5_9STRA1.630e-675.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A285Q2D9_9VIRU1.920e-672.41Ankyrin repeat n=1 Tax=Cedratvirus lausannensis Ta... [more]
A0A6G8MYC0_9VIRU2.500e-580.00Ankyrin repeat-containing protein n=1 Tax=Cedratvi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38791contigH-paniculata_contig38791:277..776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size500
Cds size366
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930189.688302-CDS-H-paniculata_contig38791:276..6421622930189.688302-CDS-H-paniculata_contig38791:276..642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38791 277..642 -
1691481184.3617911-CDS-H-paniculata_contig38791:276..6421691481184.3617911-CDS-H-paniculata_contig38791:276..642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38791 277..642 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930189.7010224-UTR-H-paniculata_contig38791:642..7761622930189.7010224-UTR-H-paniculata_contig38791:642..776Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38791 643..776 -
1691481184.3735847-UTR-H-paniculata_contig38791:642..7761691481184.3735847-UTR-H-paniculata_contig38791:642..776Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38791 643..776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38791.10128.1prot_H-paniculata_contig38791.10128.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38791 277..642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38791.10128.1

>prot_H-paniculata_contig38791.10128.1 ID=prot_H-paniculata_contig38791.10128.1|Name=mRNA_H-paniculata_contig38791.10128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MSLEHENLRGGSILGTREYFQWLRENGCAWNETTCSSAAEGGHLQVLECA
LRGHLHILQWARANGCPWDEWACRSAALGGHLNIIQWIRENGGPWDKWMC
RRAALGGHLHVLKWCRANGYP*
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mRNA from alignment at H-paniculata_contig38791:277..776-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38791.10128.1 ID=mRNA_H-paniculata_contig38791.10128.1|Name=mRNA_H-paniculata_contig38791.10128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=500bp|location=Sequence derived from alignment at H-paniculata_contig38791:277..776- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGCTGCGGAGGAAGGACATTTGCATATTCTTCAATGGGCGCGGGCGAA
TGGTTGCCCCTGGAACGAATGGACTTGCTGGGCTGCTGTCAAGGGCGGTC
ACTTGAACGTCCTCCAGTGGGCTAGGGAGCACAGATGTCCTTGGAACACG
AGAACTTGCGCGGCGGCAGCATTTTGGGGACACGTGAATATTTCCAATGG
TTGAGAGAGAACGGGTGTGCTTGGAACGAAACAACGTGCTCGTCTGCGGC
GGAGGGCGGTCACCTCCAAGTTCTTGAATGTGCTCTAAGAGGACACCTGC
ACATTTTGCAGTGGGCGCGAGCGAATGGTTGTCCCTGGGACGAATGGGCC
TGCCGGAGTGCTGCACTTGGGGGGCATCTGAACATTATCCAATGGATAAG
GGAAAATGGCGGTCCCTGGGACAAATGGATGTGCCGACGTGCTGCCCTTG
GTGGACATCTACATGTTCTCAAGTGGTGTAGGGCGAACGGCTATCCTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig38791:277..776-

>mRNA_H-paniculata_contig38791.10128.1 ID=mRNA_H-paniculata_contig38791.10128.1|Name=mRNA_H-paniculata_contig38791.10128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig38791:277..776- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCTTGGAACACGAGAACTTGCGCGGCGGCAGCATTTTGGGGACACG
TGAATATTTCCAATGGTTGAGAGAGAACGGGTGTGCTTGGAACGAAACAA
CGTGCTCGTCTGCGGCGGAGGGCGGTCACCTCCAAGTTCTTGAATGTGCT
CTAAGAGGACACCTGCACATTTTGCAGTGGGCGCGAGCGAATGGTTGTCC
CTGGGACGAATGGGCCTGCCGGAGTGCTGCACTTGGGGGGCATCTGAACA
TTATCCAATGGATAAGGGAAAATGGCGGTCCCTGGGACAAATGGATGTGC
CGACGTGCTGCCCTTGGTGGACATCTACATGTTCTCAAGTGGTGTAGGGC
GAACGGCTATCCTTGAATGTCCTTGGAACACGAGAACTTGCGCGGCGGCA
GCATTTTGGGGACACGTGAATATTTCCAATGGTTGAGAGAGAACGGGTGT
GCTTGGAACGAAACAACGTGCTCGTCTGCGGCGGAGGGCGGTCACCTCCA
AGTTCTTGAATGTGCTCTAAGAGGACACCTGCACATTTTGCAGTGGGCGC
GAGCGAATGGTTGTCCCTGGGACGAATGGGCCTGCCGGAGTGCTGCACTT
GGGGGGCATCTGAACATTATCCAATGGATAAGGGAAAATGGCGGTCCCTG
GGACAAATGGATGTGCCGACGTGCTGCCCTTGGTGGACATCTACATGTTC
TCAAGTGGTGTAGGGCGAACGGCTATCCTTGA
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