mRNA_H-paniculata_contig3879.10127.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3879.10127.1
Unique NamemRNA_H-paniculata_contig3879.10127.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3879.10127.1 vs. uniprot
Match: D7FV03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV03_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.010e-28
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 QIRRLANEALVDMFNALGGKGWRNRYGWLTPGTDVKRWHGITVDTGRLVSLNLISNDLQV 180
            QIRRLAN+ALVD+FNALGG  WRN+ GWLTPGTDVK+WHG+TV+ G LVSLNL+SNDL+V
Sbjct:   12 QIRRLANQALVDVFNALGGDRWRNKSGWLTPGTDVKKWHGVTVNAGSLVSLNLMSNDLEV 71
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BLAST of mRNA_H-paniculata_contig3879.10127.1 vs. uniprot
Match: D8LJ86_ECTSI (Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ86_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.490e-15
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    7 RRLANEALVDMFNALGGKGWRNRYGWLTPGTDVKRWHGITVDT-GRLVSLNLISNDLQ 177
            RR+AN+ L D+++ LGG  W+ R GWL PG+DV+ WHG+T+ T G LVS+NLISNDL+
Sbjct:   33 RRMANQGLQDLYDWLGGDNWKCRDGWLDPGSDVREWHGLTITTSGDLVSINLISNDLE 90
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BLAST of mRNA_H-paniculata_contig3879.10127.1 vs. uniprot
Match: K3WE76_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WE76_GLOUD)

HSP 1 Score: 53.5 bits (127), Expect = 1.390e-6
Identity = 21/51 (41.18%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   22 EALVDMFNALGGKGWRNRYGWLTPGTDVKRWHGITVDTGRLVSLNLISNDL 174
            +AL+++++ALGG  WR R  W  P  DV+ W+G+ V  G +V++ L +N+L
Sbjct:   14 QALLELYDALGGDRWRRRDAWKQPTVDVESWYGVDVMMGHVVAIELPANEL 64
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BLAST of mRNA_H-paniculata_contig3879.10127.1 vs. uniprot
Match: UPI00190B71DA (T6SS effector amidase Tae4 family protein n=1 Tax=Adhaeribacter terrigena TaxID=2793070 RepID=UPI00190B71DA)

HSP 1 Score: 53.5 bits (127), Expect = 1.450e-6
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   25 ALVDMFNALGGKGWRNRYGWL--TPGTDVKRWHGITVDTGRLVSLNLISNDL 174
            ALV+++N+  G  W N   WL  T  TD   WHG+TVD G ++ ++L SN+L
Sbjct:   35 ALVELYNSTEGPNWNNNNNWLNGTSNTDFSSWHGLTVDNGDVIFIDLSSNNL 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3879.10127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FV03_ECTSI1.010e-2878.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJ86_ECTSI1.490e-1558.62Leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
K3WE76_GLOUD1.390e-641.18Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
UPI00190B71DA1.450e-644.23T6SS effector amidase Tae4 family protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3879contigH-paniculata_contig3879:15918..16127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConserved hypothetical protein
Ec32 orthologEc-13_002040.1
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930189.6419702-CDS-H-paniculata_contig3879:15917..161271622930189.6419702-CDS-H-paniculata_contig3879:15917..16127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3879 15918..16127 -
1691481184.3516386-CDS-H-paniculata_contig3879:15917..161271691481184.3516386-CDS-H-paniculata_contig3879:15917..16127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3879 15918..16127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3879.10127.1prot_H-paniculata_contig3879.10127.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3879 15918..16127 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3879.10127.1

>prot_H-paniculata_contig3879.10127.1 ID=prot_H-paniculata_contig3879.10127.1|Name=mRNA_H-paniculata_contig3879.10127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
QIRRLANEALVDMFNALGGKGWRNRYGWLTPGTDVKRWHGITVDTGRLVS
LNLISNDLQVWRGKRGKAV*
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mRNA from alignment at H-paniculata_contig3879:15918..16127-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3879.10127.1 ID=mRNA_H-paniculata_contig3879.10127.1|Name=mRNA_H-paniculata_contig3879.10127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig3879:15918..16127- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAATTCGGCGACTAGCGAATGAGGCTTTGGTTGACATGTTCAACGCGTT
GGGCGGAAAGGGCTGGCGAAACAGATACGGATGGCTGACTCCTGGCACGG
ATGTCAAGAGATGGCATGGGATCACAGTGGATACGGGACGGCTGGTATCT
CTTAACTTGATCAGCAACGATTTACAGGTGTGGAGAGGCAAACGGGGCAA
GGCTGTCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig3879:15918..16127-

>mRNA_H-paniculata_contig3879.10127.1 ID=mRNA_H-paniculata_contig3879.10127.1|Name=mRNA_H-paniculata_contig3879.10127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig3879:15918..16127- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAATTCGGCGACTAGCGAATGAGGCTTTGGTTGACATGTTCAACGCGTT
GGGCGGAAAGGGCTGGCGAAACAGATACGGATGGCTGACTCCTGGCACGG
ATGTCAAGAGATGGCATGGGATCACAGTGGATACGGGACGGCTGGTATCT
CTTAACTTGATCAGCAACGATTTACAGGTGTGGAGAGGCAAACGGGGCAA
GGCTGTCTAACAAATTCGGCGACTAGCGAATGAGGCTTTGGTTGACATGT
TCAACGCGTTGGGCGGAAAGGGCTGGCGAAACAGATACGGATGGCTGACT
CCTGGCACGGATGTCAAGAGATGGCATGGGATCACAGTGGATACGGGACG
GCTGGTATCTCTTAACTTGATCAGCAACGATTTACAGGTGTGGAGAGGCA
AACGGGGCAAGGCTGTCTAA
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