mRNA_H-paniculata_contig38748.10119.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38748.10119.1
Unique NamemRNA_H-paniculata_contig38748.10119.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38748.10119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38748contigH-paniculata_contig38748:2..701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size633
Cds size453
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38748.10119.1prot_H-paniculata_contig38748.10119.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38748 249..701 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930188.690951-UTR-H-paniculata_contig38748:1..501622930188.690951-UTR-H-paniculata_contig38748:1..50Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38748 2..50 +
1691481183.9438493-UTR-H-paniculata_contig38748:1..501691481183.9438493-UTR-H-paniculata_contig38748:1..50Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38748 2..50 +
1622930188.7132046-UTR-H-paniculata_contig38748:118..2481622930188.7132046-UTR-H-paniculata_contig38748:118..248Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38748 119..248 +
1691481183.9527645-UTR-H-paniculata_contig38748:118..2481691481183.9527645-UTR-H-paniculata_contig38748:118..248Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38748 119..248 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930188.7293525-CDS-H-paniculata_contig38748:248..7011622930188.7293525-CDS-H-paniculata_contig38748:248..701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38748 249..701 +
1691481183.9608781-CDS-H-paniculata_contig38748:248..7011691481183.9608781-CDS-H-paniculata_contig38748:248..701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38748 249..701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38748.10119.1

>prot_H-paniculata_contig38748.10119.1 ID=prot_H-paniculata_contig38748.10119.1|Name=mRNA_H-paniculata_contig38748.10119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
MHFMSEAVQINICITTCFTSWSTRIVNGIGKYLLSGDSSLLAFSPDASRT
NIPAKPQPWYPLEVSCFPSLSSNPVGRSLESTPPTAANTFLRLRLQRASS
TGVINTHNTIWIMALYRHITHGYFHYFGRYKKKQLAIGLFLLYTPNPREH
A
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mRNA from alignment at H-paniculata_contig38748:2..701+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38748.10119.1 ID=mRNA_H-paniculata_contig38748.10119.1|Name=mRNA_H-paniculata_contig38748.10119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=700bp|location=Sequence derived from alignment at H-paniculata_contig38748:2..701+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTACGTGTCAGGAACAAAATGTCAAACTCCAAAATTGACTAAAACACAC
ACACACACACACACACACACATAACACACACAACACGAGAGTTGTTGTTG
ATTTTACCCTTCGATCCCTGAGGGGGGAGGGTCGTTGTAGTACAGTAGTA
TCATTTATGCGCTATTTGTGGGTGACAACGCCAAAAGATGCGCAACTAAC
TGACTCTCTCGTTCTTCTTGTTTCCTTCCCCCTGAAACCAGCAGATAATG
CACTTCATGTCAGAAGCTGTACAAATAAATATCTGCATCACCACCTGTTT
CACCTCATGGTCGACAAGAATTGTCAACGGTATTGGCAAGTATCTTTTGT
CTGGCGATTCTTCACTCCTCGCGTTTTCCCCGGACGCAAGCCGAACCAAC
ATACCCGCCAAACCGCAACCCTGGTACCCGTTAGAAGTCTCTTGTTTTCC
CTCTTTGTCGTCAAACCCCGTCGGTCGGTCACTAGAATCGACTCCCCCCA
CTGCTGCAAACACATTCCTACGGTTGCGTTTACAGCGAGCGAGCAGCACC
GGTGTAATCAACACACATAATACGATTTGGATAATGGCTCTTTACCGTCA
CATCACGCACGGCTATTTTCATTATTTTGGTCGCTACAAAAAAAAACAAC
TTGCCATCGGCCTGTTCTTGCTTTACACACCAAATCCTAGAGAACACGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig38748:2..701+

>mRNA_H-paniculata_contig38748.10119.1 ID=mRNA_H-paniculata_contig38748.10119.1|Name=mRNA_H-paniculata_contig38748.10119.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig38748:2..701+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACTTCATGTCAGAAGCTGTACAAATAAATATCTGCATCACCACCTG
TTTCACCTCATGGTCGACAAGAATTGTCAACGGTATTGGCAAGTATCTTT
TGTCTGGCGATTCTTCACTCCTCGCGTTTTCCCCGGACGCAAGCCGAACC
AACATACCCGCCAAACCGCAACCCTGGTACCCGTTAGAAGTCTCTTGTTT
TCCCTCTTTGTCGTCAAACCCCGTCGGTCGGTCACTAGAATCGACTCCCC
CCACTGCTGCAAACACATTCCTACGGTTGCGTTTACAGCGAGCGAGCAGC
ACCGGTGTAATCAACACACATAATACGATTTGGATAATGGCTCTTTACCG
TCACATCACGCACGGCTATTTTCATTATTTTGGTCGCTACAAAAAAAAAC
AACTTGCCATCGGCCTGTTCTTGCTTTACACACCAAATCCTAGAGAACAC
GCAATGCACTTCATGTCAGAAGCTGTACAAATAAATATCTGCATCACCAC
CTGTTTCACCTCATGGTCGACAAGAATTGTCAACGGTATTGGCAAGTATC
TTTTGTCTGGCGATTCTTCACTCCTCGCGTTTTCCCCGGACGCAAGCCGA
ACCAACATACCCGCCAAACCGCAACCCTGGTACCCGTTAGAAGTCTCTTG
TTTTCCCTCTTTGTCGTCAAACCCCGTCGGTCGGTCACTAGAATCGACTC
CCCCCACTGCTGCAAACACATTCCTACGGTTGCGTTTACAGCGAGCGAGC
AGCACCGGTGTAATCAACACACATAATACGATTTGGATAATGGCTCTTTA
CCGTCACATCACGCACGGCTATTTTCATTATTTTGGTCGCTACAAAAAAA
AACAACTTGCCATCGGCCTGTTCTTGCTTTACACACCAAATCCTAGAGAA
CACGCA
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