prot_H-paniculata_contig387.10109.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig387.10109.1
Unique Nameprot_H-paniculata_contig387.10109.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length564
Homology
BLAST of mRNA_H-paniculata_contig387.10109.1 vs. uniprot
Match: D8LB95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB95_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 1.030e-63
Identity = 156/313 (49.84%), Postives = 173/313 (55.27%), Query Frame = 0
Query:  279 EPSKVLHVRNVGHPVTQGDLLSLLSCFGPVEKIKMFSGQALVQLPSVSIAKATMRHFEEDEEAKIGSKRVYINYSRSRSIEPRDGXXXXXXXXXXXXXXXXXL---------------GMNGLIDLGRIGXXXXXXXXXXXTPRGGGIPAGLIGLDGNGNGAGAASQDPASPYAHLIMEDHAKLLSLATFYLQTYMLPGGEGAVININRREEMADYQRHAMHAM----GMNGGXXXXXXXXXXXSLAGWNGNTATTAAASRLPGNMPPVGG-------------------FNPGYSGRPRSGSRGLVSDFADR 553
            EPSKVLHVRNVG+PV QGDL++LLSCFG VEK+KMFSGQALVQLPSVS+AKATMRH+EED E KIG KRVY+NYSRSRSIE RDG            XXXXX                G NGL DL R               RG G      G+DG   G     Q+  SPYAHLIMEDHAKLL LAT YLQTY +PGGEGA++NIN+REEMA+ QR AM A     G NG             +  WNGN A                                    F+ GY GRPRSGSRG   +  DR
Sbjct:  225 EPSKVLHVRNVGYPVVQGDLVALLSCFGQVEKLKMFSGQALVQLPSVSVAKATMRHYEEDAEPKIGQKRVYLNYSRSRSIETRDGESLAVGATAGGGXXXXXXXXXXXXXXXXXNVNGGNNGL-DLARA----------INAARGVG------GMDGGSTGN--PMQETPSPYAHLIMEDHAKLLGLATCYLQTYGIPGGEGAILNINQREEMAERQRQAMAAAFALTGANG------HALHHAGMGAWNGNAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFSTGYGGRPRSGSRGRAGEGLDR 512          
BLAST of mRNA_H-paniculata_contig387.10109.1 vs. uniprot
Match: UPI00092E3B18 (polypyrimidine tract-binding protein homolog 3-like n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092E3B18)

HSP 1 Score: 63.2 bits (152), Expect = 2.190e-7
Identity = 32/86 (37.21%), Postives = 52/86 (60.47%), Query Frame = 0
Query:  279 EPSKVLHVRNVGHPVTQGDLLSLLSCFGPVEKIKMF--SGQALVQLPSVSIAKATMRHFEEDEEAKIGSKRVYINYSRSRSIEPRD 362
            EPSKV+H+RNVG  +++ DLL L   FG + K+ M     QAL+Q+  ++ A + ++ F E+ +  I  + VYI +S  + + P D
Sbjct:    3 EPSKVIHIRNVGQEISEADLLQLFQSFGVITKLVMLRAKNQALIQMQDIATAVSALQ-FYENIQPNIRGRNVYIQFSSHQDLAPTD 87          
BLAST of mRNA_H-paniculata_contig387.10109.1 vs. uniprot
Match: A0A444XTH1_ARAHY (RRM domain-containing protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444XTH1_ARAHY)

HSP 1 Score: 60.5 bits (145), Expect = 2.230e-7
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 0
Query:  275 DFDL----EPSKVLHVRNVGHPVTQGDLLSLLSCFGPVEKIKMF--SGQALVQLPSVSIAKATMRHFEEDEEAKIGSKRVYINYSRSRSIEPRD 362
            D DL    EPSKV+HVRNVGH +++ DLL L   FG + K+ M     QALVQ+  V+ A  +++ F  + +  I  + VY+ +S  + +   D
Sbjct:   33 DSDLQTMAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALVQMQDVASAVNSLQ-FYANVQPSIRGRNVYVQFSSHQELTSMD 125          
BLAST of mRNA_H-paniculata_contig387.10109.1 vs. uniprot
Match: A0A1R3L5K1_ASPOF (Uncharacterized protein n=3 Tax=Asparagus officinalis TaxID=4686 RepID=A0A1R3L5K1_ASPOF)

HSP 1 Score: 64.3 bits (155), Expect = 2.940e-7
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 0
Query:  279 EPSKVLHVRNVGHPVTQGDLLSLLSCFGPVEKIKMF--SGQALVQLPSVSIAKATMRHFEEDEEAKIGSKRVYINYSRSRSIEPRD 362
            EPSKV+HVRNVGH + + DLL LL  FG V K+ M     QAL+Q+  VS A A M+++   + + +  + VY+ +S  + +   D
Sbjct:    3 EPSKVIHVRNVGHEIAESDLLQLLQPFGTVTKVVMLRAKNQALLQMYDVSSAAAAMQYYANVQPS-VRGRNVYMQFSSHQELTTMD 87          
BLAST of mRNA_H-paniculata_contig387.10109.1 vs. uniprot
Match: A0A446K2N1_TRITD (RRM domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446K2N1_TRITD)

HSP 1 Score: 60.8 bits (146), Expect = 3.440e-7
Identity = 30/82 (36.59%), Postives = 52/82 (63.41%), Query Frame = 0
Query:  279 EPSKVLHVRNVGHPVTQGDLLSLLSCFGPVEKIKMFSG--QALVQLPSVSIAKATMRHFEEDEEAKIGSKRVYINYSRSRSI 358
            EPSKV+H+RNVGH +T+ DLL LL  FG + K+ M  G  QAL+Q+  +  + + ++++   + + I  + VY+ +S  + +
Sbjct:    3 EPSKVIHIRNVGHEITEADLLQLLQPFGSISKLVMLRGKNQALLQMQDIHSSVSALQYYSGVQPS-IRGRHVYMQFSSHQEL 83          
BLAST of mRNA_H-paniculata_contig387.10109.1 vs. uniprot
Match: A0A452Z727_AEGTS (RRM domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452Z727_AEGTS)

HSP 1 Score: 60.8 bits (146), Expect = 4.150e-7
Identity = 30/82 (36.59%), Postives = 52/82 (63.41%), Query Frame = 0
Query:  279 EPSKVLHVRNVGHPVTQGDLLSLLSCFGPVEKIKMFSG--QALVQLPSVSIAKATMRHFEEDEEAKIGSKRVYINYSRSRSI 358
            EPSKV+H+RNVGH +T+ DLL LL  FG V K+ M  G  QAL+Q+  +  + + ++++   + + +  + VY+ +S  + +
Sbjct:    3 EPSKVIHIRNVGHEITEADLLQLLQPFGSVSKLVMLRGKNQALLQMQDIHSSVSALQYYSGVQPS-VRGRHVYMQFSSHQEL 83          
BLAST of mRNA_H-paniculata_contig387.10109.1 vs. uniprot
Match: A0A452Z729_AEGTS (RRM domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452Z729_AEGTS)

HSP 1 Score: 57.8 bits (138), Expect = 5.410e-7
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 0
Query:  279 EPSKVLHVRNVGHPVTQGDLLSLLSCFGPVEKIKMFSG--QALVQLPSVSIAKATMRHF 335
            EPSKV+H+RNVGH +T+ DLL LL  FG V K+ M  G  QAL+Q+  +  + + ++++
Sbjct:    3 EPSKVIHIRNVGHEITEADLLQLLQPFGSVSKLVMLRGKNQALLQMQDIHSSVSALQYY 61          
BLAST of mRNA_H-paniculata_contig387.10109.1 vs. uniprot
Match: UPI00126323E9 (polypyrimidine tract-binding protein homolog 3-like n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI00126323E9)

HSP 1 Score: 60.1 bits (144), Expect = 6.100e-7
Identity = 32/86 (37.21%), Postives = 51/86 (59.30%), Query Frame = 0
Query:  279 EPSKVLHVRNVGHPVTQGDLLSLLSCFGPVEKIKMF--SGQALVQLPSVSIAKATMRHFEEDEEAKIGSKRVYINYSRSRSIEPRD 362
            EPSKV+HVRNVGH +++ DLL L   FG + K+ M     QAL+Q+  V  A A ++++   + + I  + VY+ +S  + +   D
Sbjct:    3 EPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAIAALQYYANVQPS-IRGRNVYVQFSSHQELTTMD 87          
BLAST of mRNA_H-paniculata_contig387.10109.1 vs. uniprot
Match: A0A6A4QWU5_LUPAL (Putative RNA recognition motif domain-containing protein n=10 Tax=Lupinus TaxID=3869 RepID=A0A6A4QWU5_LUPAL)

HSP 1 Score: 63.2 bits (152), Expect = 7.990e-7
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 0
Query:  279 EPSKVLHVRNVGHPVTQGDLLSLLSCFGPVEKIKMF--SGQALVQLPSVSIAKATMRHFEEDEEAKIGSKRVYINYSRSRSIEPRD 362
            EPSKV+H+RNVG  +++ DLL L   FG + K+ M     QAL+Q+  V  A + ++ F E+ +  I  + VYI +S  + + P D
Sbjct:    3 EPSKVIHIRNVGQEISEDDLLQLFQSFGVITKLVMLRAKNQALIQMQDVDTAASALQ-FYENIQPNIRGRNVYIQFSSHQDLAPTD 87          
BLAST of mRNA_H-paniculata_contig387.10109.1 vs. uniprot
Match: A0A452Z725_AEGTS (RRM domain-containing protein n=8 Tax=Triticinae TaxID=1648030 RepID=A0A452Z725_AEGTS)

HSP 1 Score: 61.6 bits (148), Expect = 9.170e-7
Identity = 32/89 (35.96%), Postives = 54/89 (60.67%), Query Frame = 0
Query:  272 RPGDFDLEPSKVLHVRNVGHPVTQGDLLSLLSCFGPVEKIKMFSG--QALVQLPSVSIAKATMRHFEEDEEAKIGSKRVYINYSRSRSI 358
            R G    EPSKV+H+RNVGH +T+ DLL LL  FG V K+ M  G  QAL+Q+  +  + + ++++   + + +  + VY+ +S  + +
Sbjct:   44 RRGGRMAEPSKVIHIRNVGHEITEADLLQLLQPFGSVSKLVMLRGKNQALLQMQDIHSSVSALQYYSGVQPS-VRGRHVYMQFSSHQEL 131          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig387.10109.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB95_ECTSI1.030e-6349.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI00092E3B182.190e-737.21polypyrimidine tract-binding protein homolog 3-lik... [more]
A0A444XTH1_ARAHY2.230e-738.30RRM domain-containing protein n=1 Tax=Arachis hypo... [more]
A0A1R3L5K1_ASPOF2.940e-740.70Uncharacterized protein n=3 Tax=Asparagus officina... [more]
A0A446K2N1_TRITD3.440e-736.59RRM domain-containing protein n=1 Tax=Triticum tur... [more]
A0A452Z727_AEGTS4.150e-736.59RRM domain-containing protein n=2 Tax=Aegilops tau... [more]
A0A452Z729_AEGTS5.410e-745.76RRM domain-containing protein n=1 Tax=Aegilops tau... [more]
UPI00126323E96.100e-737.21polypyrimidine tract-binding protein homolog 3-lik... [more]
A0A6A4QWU5_LUPAL7.990e-738.37Putative RNA recognition motif domain-containing p... [more]
A0A452Z725_AEGTS9.170e-735.96RRM domain-containing protein n=8 Tax=Triticinae T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 283..351
e-value: 1.6E-4
score: 31.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 282..355
score: 9.746
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 275..363
e-value: 1.6E-13
score: 52.4
NoneNo IPR availablePANTHERPTHR15592:SF18HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Lcoord: 279..362
NoneNo IPR availablePANTHERPTHR15592MATRIN 3/NUCLEAR PROTEIN 220-RELATEDcoord: 279..362
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 268..367

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig387contigH-paniculata_contig387:21676..35251 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig387.10109.1mRNA_H-paniculata_contig387.10109.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig387 16336..36051 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig387.10109.1 ID=prot_H-paniculata_contig387.10109.1|Name=mRNA_H-paniculata_contig387.10109.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=564bp
MTDMFATNGSPLLDTTSSMDVVESGGSSPSLAPMKEDRGIFVDPQQQQPG
ASSSAAAHAGVNSVSEDREEDDEDVRSHRSSIHSNVGSLRAPSEDNSSSD
DDHGSRGNRRRRSRSRGELGRARVNTGDDMRRDVGGSGGGGGGAGGGSSR
HHRRGGGGGGSTSLSPKNALSNNGRLSSSARERSRSRDRRDDSSSSINNH
NHNRQRSRSGTGSSNNSLSPRSRGRCGGIGPAAGAAAGAAPGARSSNGEL
KMDNSPKRRRGGGGGGGGGSPRPGDFDLEPSKVLHVRNVGHPVTQGDLLS
LLSCFGPVEKIKMFSGQALVQLPSVSIAKATMRHFEEDEEAKIGSKRVYI
NYSRSRSIEPRDGEGGGGGGGGGGSNNGHGLGMNGLIDLGRIGGGGSVGG
SSGGTPRGGGIPAGLIGLDGNGNGAGAASQDPASPYAHLIMEDHAKLLSL
ATFYLQTYMLPGGEGAVININRREEMADYQRHAMHAMGMNGGGGNGHAHA
HTHSLAGWNGNTATTAAASRLPGNMPPVGGFNPGYSGRPRSGSRGLVSDF
ADRSQQQRRPLPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf