mRNA_H-paniculata_contig38694.10107.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38694.10107.1
Unique NamemRNA_H-paniculata_contig38694.10107.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig38694.10107.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 1.650e-57
Identity = 126/357 (35.29%), Postives = 189/357 (52.94%), Query Frame = 1
Query:   49 NYQECRGRVRLADGNYLPIEGIGILFIHVRF--DSKVVLMKLIQVAHVPLLSHYLLPLGRFADSGHDIGAPAKG-------GTQVY------------------IEDSALATIAPSRLAVHSATHVDISAFHCSFGHANGFLLRETAKQRGVVLTG-ELRRCRGCAMVKGLREPISKAPAPRAVKERSLTYVDTCGPKGVWGVGGVRFMRIVKDSFSRKSTVYFMRSKSKVGGHLKQYLADTRSDSIPSSAGVIRTDNTAEFREGEFAEICREQGIRQECITRDRPPYNGVAERGIAMIESAGLSAQIQAKYLFPGVKIPSGDSLWSLRNLWACHALICTETRANVGYMSPYELWYG 1035
            NY+EC G V+   GN  P+  +G   + V F  +   V + ++  AHVP   H LL L   A+ GH       G       G +V+                  ++ +  ATI P      +AT  D+++ H S GH +  LL++TAKQ+GV LTG  L  C GC+M KG  +PISK+   RA  +    +++  G      +GG  +  I++D  +R + V+F++ KS      +QYLAD R++++P    V RTD   EF+ G+FAE+CR  GI+QE    + P YNGVAER + ++  + L+++IQAK +FP   +  G  LW+     ACH + CT T  N G+ SP EL++G
Sbjct:   10 NYRECSGWVKGIGGNNAPVPPLGYGDVTVVFLTEGGRVPVLILNAAHVPESPHNLLSLSALAEEGHTYSGQKGGLTLTTRAGGKVWFPRPGKLLTQEGYQIEPKVDIACAATIVPGD--AKAATPTDLNSDHNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQ-GQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPG--LWAEAISCACHQMNCTATTGNPGHKSPEELFHG 361          
BLAST of mRNA_H-paniculata_contig38694.10107.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 1.910e-57
Identity = 98/234 (41.88%), Postives = 143/234 (61.11%), Query Frame = 1
Query:  337 THVDISAFHCSFGHANGFLLRETAKQRGVVLTGELRRCRGCAMVKGLREPISKAPAPRAVKERSLTYVDTCGPKGVWGVGGVRFMRIVKDSFSRKSTVYFMRSKSKVGGHLKQYLADTRSDSIPSSAGVIRTDNTAEFREGEFAEICREQGIRQECITRDRPPYNGVAERGIAMIESAGLSAQIQAKYLFPGVKIPSGDSLWSLRNLWACHALICTETRANVGYMSPYELWYGK 1038
            T +DI+ FH  + H++  LLR TAK+ G  L G++  C GC+M K +R+ I +    R+ K+    + D  G K +  VGG  +  IVKD F+R + +YF+R+KS  G   + +LA  R++ +PS   ++R+DN  +F  G+FA +C E  I+QE      P YNGVAERG+ +IE A ++A+IQAK LF  V++P  D LW+    WAC A+  T   AN   MSPYE+WYG+
Sbjct:   30 TTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE 263          
BLAST of mRNA_H-paniculata_contig38694.10107.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 3.450e-57
Identity = 133/372 (35.75%), Postives = 200/372 (53.76%), Query Frame = 1
Query:    1 DNGVTKHMTNDPDFLRNYQECRGRVRLADGNYLPIEGIGILFIHVRFDSKVVLMKLIQVAHVPLLSHYLLPLGRFADSGHDI-GAPA------KGGTQVY------------------IEDSALATIAPSRLAVHSATHVDISAFHCSFGHANGFLLRETAKQRGVVLTG-ELRRCRGCAMVKGLREPISKAPAPRAVKERSLTYVDTCGPKGVWGVGGVRFMRIVKDSFSRKSTVYFMRSKSKVGGHLKQYLADTRSDSIPSSAGVIRTDNTAEFREGEFAEICREQGIRQECITRDRPPYNGVAERGIAMIESAGLSAQIQAKYLFPGVKIPSGDSLWSLRNLWACHALICTETRANVGYMSPYELWYGK 1038
            D+G T  M    D  +NYQEC  RV+   G +L I G G + + ++ + + V + + + AHVP +   L+ L    + GH   G P       K G +V+                  ++ +  A I P      +AT  D++ FH S GHA+  LLR TAKQ+GV LTG  L  C GC+M KG  + + +    RAVK+    ++D  G      +GG  +  I++   +R + V+F++ KS+    L+Q++AD RS+  P    V+R+DN  EF+ G+F++ CR+ GI+QE      P YNGVAER + +I  A L+++IQAK +FP    P+  +LW+     ACH L CT T AN G  SPYE+++GK
Sbjct:  562 DSGATCSMFRSADGFKNYQECNRRVKGIGGEFLRILGYGDVTVVLQSEGQEVPVPIKRAAHVPGMDLNLISLTSLTEEGHTYAGKPGGLVLTTKAGKEVWFPQLGKLLSLWGYQTEPEVDTACAAIIVPGE--AKAATPTDLNEFHNSHGHAHERLLRLTAKQQGVELTGGPLLSCTGCSMAKGQVKAVQRFTDTRAVKKLFRVFIDLGGRMQFHSIGGRWYTLIIRCDATRWTRVFFLKRKSEAADALEQFIADYRSEGTPCEVYVVRSDN--EFQ-GQFSKTCRKWGIKQEKTPPHTPKYNGVAERWLGIISDAALASRIQAKEMFPDA--PTDPALWAEAIACACHQLNCTATTANPGDKSPYEMFHGK 926          
BLAST of mRNA_H-paniculata_contig38694.10107.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 3.570e-57
Identity = 100/234 (42.74%), Postives = 146/234 (62.39%), Query Frame = 1
Query:  337 THVDISAFHCSFGHANGFLLRETAKQRGVVLTGELRRCRGCAMVKGLREPISKAPAPRAVKERSLTYVDTCGPKGVWGVGGVRFMRIVKDSFSRKSTVYFMRSKSKVGGHLKQYLADTRSDSIPSSAGVIRTDNTAEFREGEFAEICREQGIRQECITRDRPPYNGVAERGIAMIESAGLSAQIQAKYLFPGVKIPSGDSLWSLRNLWACHALICTETRANVGYMSPYELWYGK 1038
            T +DI+ FH  + H++  LLR TAK+ G  L G++  C GC+M K +R+ I +    R+ K+    +VD  G K +  VGG  +  IVKD F+R++ +YF++++S  GG  + +LA  R++ +PS   ++R+DN  EF  GEFA +C E  I+QE      P YNGVAERG+ +IE A ++A+IQAK LF  V++P  D LW+    WAC A+  T   AN   MSPYE+WYG+
Sbjct:  250 TTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE 483          
BLAST of mRNA_H-paniculata_contig38694.10107.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 4.330e-57
Identity = 133/371 (35.85%), Postives = 194/371 (52.29%), Query Frame = 1
Query:    1 DNGVTKHMTNDPDFLRNYQECRGRVRLADGNYLPIEGIGIL-FIHVRFDSKVVLMKLIQVAHVPLLSHYLL-PLGRF-ADSGHDIGAPAKGGT----QVYIED------------------SALATIAPSRLAVHSATHVDISAFHCSFGHANGFLLRETAKQRGVVLTGELRRCRGCAMVKGLREPISKAPAPRAVKERSLTYVDTCGPKGVWGVGGVRFMRIVKDSFSRKSTVYFMRSKSKVGGHLKQYLADTRSDSIPSSAGVIRTDNTAEFREGEFAEICREQGIRQECITRDRPPYNGVAERGIAMIESAGLSAQIQAKYLFPGVKIPSGDSLWSLRNLWACHALICTETRANVGYMSPYELWYGK 1038
            D G   HMT+    +++ + C   V    G    I   G L  + V  DS+   M+L  V + P L + L  P   F  +S + +G P    T    QV  ++                  + LA + PS    H  T +D++ FH  + H++  LLR TAK+ G  L GE+  C GC+M K +++ I++    R+ K+    +VD  G K V  VGG  +  IVKD F+R++ +YF++ KS  G   + +LA  R+D +PS   ++R+DN  EF  GEFA +C E  I+QE      P YNGVAERG+ +IE A ++A+IQAK LF  V++P  D LW+    WAC A+  T   AN    SPYE+WYG+
Sbjct:  528 DTGTAFHMTDSLACMKDLKPCHKSVNGIGGVSCEISFSGTLELVFVTADSEFS-MELKNVLYSPNLGYNLFSPSAEFDGESWNGLGGPDGVMTAFKGQVTFQNFDGMLIASAYRLGEASVGTVLAALTPSN-PKHKTT-MDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE 895          
BLAST of mRNA_H-paniculata_contig38694.10107.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 6.000e-57
Identity = 129/369 (34.96%), Postives = 193/369 (52.30%), Query Frame = 1
Query:    1 DNGVTKHMTNDPDFLRNYQECRGRVRLADGNYLPIEGIGILFI-HVRFDSKVVLMKLIQVAHVPLLSHYLL-PLGRF-ADSGHDIGAP-----AKGGTQVYIEDSALATIAPSRLAVHSATHV---------------DISAFHCSFGHANGFLLRETAKQRGVVLTGELRRCRGCAMVKGLREPISKAPAPRAVKERSLTYVDTCGPKGVWGVGGVRFMRIVKDSFSRKSTVYFMRSKSKVGGHLKQYLADTRSDSIPSSAGVIRTDNTAEFREGEFAEICREQGIRQECITRDRPPYNGVAERGIAMIESAGLSAQIQAKYLFPGVKIPSGDSLWSLRNLWACHALICTETRANVGYMSPYELWYGK 1038
            D G   +MT+    +++   C  +V+   G    +   G L +  V  DS+    +L  V + P L + L  P   F  +S + +G P     A  G   +     +      RL  +S   V               D++ FH  +GHA+  +LR TAK+ G+ LTG++  C GC+M K +R+ I+      + K+    +V+  G KGV  +GG  +  I+KD F+R++ +YF+RSKS  G   + +LA+ R+D IPS   ++R+DN  EF  GEFA +C E  I+QE      P +NGVAERG+ +IE A ++A+IQAK LF  V++P  D LW+    WAC AL  T   AN    SPYE+WYG+
Sbjct:  255 DTGTAFNMTDSLSCMKDVNPCHNKVKGIGGVTCEVALSGTLEVAFVSADSEFS-AELKNVLYAPKLGYNLFSPSAEFDGESWNGLGGPDGVMTAFHGHVTFQNFDGMLVATAYRLGHNSIGSVLAALTPSNPKRVKIMDVNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGE 622          
BLAST of mRNA_H-paniculata_contig38694.10107.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 1.260e-56
Identity = 133/371 (35.85%), Postives = 197/371 (53.10%), Query Frame = 1
Query:    1 DNGVTKHMTNDPDFLRNYQECRGRVRLADGNYLPIEGIGIL-FIHVRFDSKVVLMKLIQVAHVPLLSHYLL-PLGRF-ADSGHDIGAP-----AKGGTQVY-------------IED----SALATIAPSRLAVHSATHVDISAFHCSFGHANGFLLRETAKQRGVVLTGELRRCRGCAMVKGLREPISKAPAPRAVKERSLTYVDTCGPKGVWGVGGVRFMRIVKDSFSRKSTVYFMRSKSKVGGHLKQYLADTRSDSIPSSAGVIRTDNTAEFREGEFAEICREQGIRQECITRDRPPYNGVAERGIAMIESAGLSAQIQAKYLFPGVKIPSGDSLWSLRNLWACHALICTETRANVGYMSPYELWYGK 1038
            D G   HMT+    +++ + C   V+   G    IE  G L  + V  DS+   ++L  V + P L + L  P   F  +S + +G P     A  G   +             +E+    S LA + PS     S   +D++ FH  + H++  LLR TAK+ G+ LTG++  C GC+M K  ++ I+     R+ K+    +VD  G K V  VGG  +  IVKD F+R++ +YF++SKS      + +LA  R+D IPS   ++R+DN  EF  GEFA +C E  I+QE      P YNGVAERG+ +IE+A ++A+IQAK LF  V++P  D LW+    WAC A+  T   AN    SPYE+W+G+
Sbjct:  434 DTGTAFHMTDRLSCMKDLKPCHKNVKGIGGVTCEIEFSGTLELVFVTADSQFP-VELENVLYSPNLGYNLFSPSAEFDGESWNYLGGPDGVMTAFNGHVTFQNLDGMLISPAYRLENNCVGSVLAALTPSNPKHESK--MDVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGE 801          
BLAST of mRNA_H-paniculata_contig38694.10107.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 1.520e-56
Identity = 132/371 (35.58%), Postives = 194/371 (52.29%), Query Frame = 1
Query:    1 DNGVTKHMTNDPDFLRNYQECRGRVRLADGNYLPIEGIGIL-FIHVRFDSKVVLMKLIQVAHVPLLSHYLL-PLGRF-ADSGHDIGAPAKGGT----QVYIED------------------SALATIAPSRLAVHSATHVDISAFHCSFGHANGFLLRETAKQRGVVLTGELRRCRGCAMVKGLREPISKAPAPRAVKERSLTYVDTCGPKGVWGVGGVRFMRIVKDSFSRKSTVYFMRSKSKVGGHLKQYLADTRSDSIPSSAGVIRTDNTAEFREGEFAEICREQGIRQECITRDRPPYNGVAERGIAMIESAGLSAQIQAKYLFPGVKIPSGDSLWSLRNLWACHALICTETRANVGYMSPYELWYGK 1038
            D G   HMT+    +++ + C   V    G    I   G L  + V  DS+   ++L  V + P L + L  P   F  +S + +G P    T    QV  ++                  + LA + PS    H  T +D++ FH  + H++  LLR TAK+ G  L GE+  C GC+M K +++ I++    R+ K+    +VD  G K V  VGG  +  IVKD F+R++ +YF++ KS  G   + +LA  R+D +PS   ++R+DN  EF  GEFA +C E  I+QE      P YNGVAERG+ +IE A ++A+IQAK LF  V++P  D LW+    WAC A+  T   AN    SPYE+WYG+
Sbjct:  235 DTGTAFHMTDSLACMKDLKPCHKSVNGIGGVSCEISFSGTLELVFVTADSEFS-VELKNVLYSPNLGYNLFSPSAEFDGESWNGLGGPDGVMTAFKGQVTFQNFDGMLIASAYRLGEASVGTVLAALTPSN-PKHKTT-MDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE 602          
BLAST of mRNA_H-paniculata_contig38694.10107.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 2.040e-54
Identity = 100/234 (42.74%), Postives = 143/234 (61.11%), Query Frame = 1
Query:  337 THVDISAFHCSFGHANGFLLRETAKQRGVVLTGELRRCRGCAMVKGLREPISKAPAPRAVKERSLTYVDTCGPKGVWGVGGVRFMRIVKDSFSRKSTVYFMRSKSKVGGHLKQYLADTRSDSIPSSAGVIRTDNTAEFREGEFAEICREQGIRQECITRDRPPYNGVAERGIAMIESAGLSAQIQAKYLFPGVKIPSGDSLWSLRNLWACHALICTETRANVGYMSPYELWYGK 1038
            T +DI+ FH  + H++  LLR TAK+ G  L G++  C GC+M K +R+ I +    R+ K+    +VD  G K    VGG  +  IVKD F+R++ +YF+R+KS  G   + +LA  R++ +PS   ++R+DN  EF  GEFA +C E  I+QE      P YNGVAERG+ +IE A ++A+IQAK LF  V++P  D LW+    WAC A+  T   AN   M PYE+WYG+
Sbjct:  128 TTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE 361          
BLAST of mRNA_H-paniculata_contig38694.10107.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 2.320e-53
Identity = 99/234 (42.31%), Postives = 142/234 (60.68%), Query Frame = 1
Query:  337 THVDISAFHCSFGHANGFLLRETAKQRGVVLTGELRRCRGCAMVKGLREPISKAPAPRAVKERSLTYVDTCGPKGVWGVGGVRFMRIVKDSFSRKSTVYFMRSKSKVGGHLKQYLADTRSDSIPSSAGVIRTDNTAEFREGEFAEICREQGIRQECITRDRPPYNGVAERGIAMIESAGLSAQIQAKYLFPGVKIPSGDSLWSLRNLWACHALICTETRANVGYMSPYELWYGK 1038
            T +DI+ FH  + H++  LLR TAK+ G  L G++  C GC+M K +R+ I      R+ K+    +VD  G K +  VGG  +  IVKD F+R++ + F+R+KS  G   + +LA  R++ +PS   ++R+DN  EF  GEF  +C E  I+QE      P YNGVAERG+ +IE A ++A+IQAK LF  V++P  D LW+    WAC A+  T   AN   MSPYE+WYG+
Sbjct:  183 TTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE 416          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38694.10107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL52_9PHAE1.650e-5735.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KVR5_9PHAE1.910e-5741.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L175_9PHAE3.450e-5735.75Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV76_9PHAE3.570e-5742.74Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JBA7_9PHAE4.330e-5735.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE6.000e-5734.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M6_9PHAE1.260e-5635.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE1.520e-5635.58Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3Y0_9PHAE2.040e-5442.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRL9_9PHAE2.320e-5342.31Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38694contigH-paniculata_contig38694:156..1259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score102.4
Seed ortholog evalue4.1e-19
Seed eggNOG ortholog15368.BRADI1G43020.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size1038
Cds size1017
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38694.10107.1prot_H-paniculata_contig38694.10107.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38694 177..1259 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930187.3223495-UTR-H-paniculata_contig38694:155..1761622930187.3223495-UTR-H-paniculata_contig38694:155..176Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38694 156..176 +
1691481183.328712-UTR-H-paniculata_contig38694:155..1761691481183.328712-UTR-H-paniculata_contig38694:155..176Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38694 156..176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930187.3543813-CDS-H-paniculata_contig38694:176..4181622930187.3543813-CDS-H-paniculata_contig38694:176..418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38694 177..418 +
1691481183.349994-CDS-H-paniculata_contig38694:176..4181691481183.349994-CDS-H-paniculata_contig38694:176..418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38694 177..418 +
1622930187.3695807-CDS-H-paniculata_contig38694:484..12591622930187.3695807-CDS-H-paniculata_contig38694:484..1259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38694 485..1259 +
1691481183.361257-CDS-H-paniculata_contig38694:484..12591691481183.361257-CDS-H-paniculata_contig38694:484..1259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38694 485..1259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38694.10107.1

>prot_H-paniculata_contig38694.10107.1 ID=prot_H-paniculata_contig38694.10107.1|Name=mRNA_H-paniculata_contig38694.10107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=339bp
MTNDPDFLRNYQECRGRVRLADGNYLPIEGIGILFIHVRFDSKVVLMKLI
QVAHVPLLSHYLLPLGRFADSGHDIGAPAKGGTQVYIEDSALATIAPSRL
AVHSATHVDISAFHCSFGHANGFLLRETAKQRGVVLTGELRRCRGCAMVK
GLREPISKAPAPRAVKERSLTYVDTCGPKGVWGVGGVRFMRIVKDSFSRK
STVYFMRSKSKVGGHLKQYLADTRSDSIPSSAGVIRTDNTAEFREGEFAE
ICREQGIRQECITRDRPPYNGVAERGIAMIESAGLSAQIQAKYLFPGVKI
PSGDSLWSLRNLWACHALICTETRANVGYMSPYELWYGK
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mRNA from alignment at H-paniculata_contig38694:156..1259+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38694.10107.1 ID=mRNA_H-paniculata_contig38694.10107.1|Name=mRNA_H-paniculata_contig38694.10107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1104bp|location=Sequence derived from alignment at H-paniculata_contig38694:156..1259+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATAATGGGGTAACGAAGCACATGACTAATGACCCGGATTTTCTTCGTAA TTACCAGGAATGTAGGGGGCGTGTTCGCCTTGCTGATGGTAATTATCTTC CTATCGAAGGAATTGGAATTTTGTTCATCCATGTTCGATTTGACTCTAAA GTAGTATTGATGAAATTGATTCAAGTTGCTCACGTGCCGCTTCTGAGTCA TTACCTTCTACCTCTCGGTAGGTTCGCGGACTCTGGTCACGATATAGGTG CTCCCGCGAAGGGGTAAGACTTGATCTGAAAAGTGGTAGTTCTGTGTGCT GAACGATTTGACAGCCTTGACATGATCAGAGGGACACAAGTTTATATCGA AGATAGTGCTCTTGCAACGATAGCCCCGTCTCGCCTAGCAGTTCATTCTG CTACTCACGTCGACATCAGCGCTTTTCACTGCTCCTTTGGTCATGCGAAC GGGTTCCTACTTCGAGAGACAGCAAAGCAGCGTGGTGTGGTACTAACTGG AGAGCTGCGACGGTGCAGGGGATGTGCGATGGTGAAGGGCCTGCGCGAGC CGATCAGCAAGGCACCAGCTCCCAGAGCAGTTAAGGAACGAAGCCTCACT TATGTTGATACTTGTGGTCCAAAGGGAGTTTGGGGTGTTGGCGGGGTTCG TTTTATGAGGATTGTTAAGGATAGTTTCTCACGCAAATCAACTGTATACT TCATGCGAAGTAAAAGCAAGGTAGGAGGGCACCTCAAACAATACCTAGCA GACACTAGGTCAGACAGTATTCCATCGTCAGCTGGAGTAATCCGAACTGA CAATACTGCGGAGTTCAGAGAAGGAGAGTTTGCCGAGATCTGTAGGGAGC AAGGTATTAGACAAGAGTGTATTACACGCGATAGGCCACCGTACAATGGT GTTGCTGAGAGAGGTATCGCAATGATCGAGTCGGCTGGTTTGTCTGCTCA GATTCAGGCCAAATACCTTTTTCCTGGTGTGAAGATTCCGTCTGGTGATT CGTTGTGGTCATTACGAAATCTCTGGGCGTGCCACGCTCTGATCTGTACT GAAACAAGAGCGAACGTAGGTTACATGTCGCCGTACGAGCTCTGGTATGG CAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig38694:156..1259+

>mRNA_H-paniculata_contig38694.10107.1 ID=mRNA_H-paniculata_contig38694.10107.1|Name=mRNA_H-paniculata_contig38694.10107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2034bp|location=Sequence derived from alignment at H-paniculata_contig38694:156..1259+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTAATGACCCGGATTTTCTTCGTAATTACCAGGAATGTAGGGGGCG
TGTTCGCCTTGCTGATGGTAATTATCTTCCTATCGAAGGAATTGGAATTT
TGTTCATCCATGTTCGATTTGACTCTAAAGTAGTATTGATGAAATTGATT
CAAGTTGCTCACGTGCCGCTTCTGAGTCATTACCTTCTACCTCTCGGTAG
GTTCGCGGACTCTGGTCACGATATAGGTGCTCCCGCGAAGGGATGACTAA
TGACCCGGATTTTCTTCGTAATTACCAGGAATGTAGGGGGCGTGTTCGCC
TTGCTGATGGTAATTATCTTCCTATCGAAGGAATTGGAATTTTGTTCATC
CATGTTCGATTTGACTCTAAAGTAGTATTGATGAAATTGATTCAAGTTGC
TCACGTGCCGCTTCTGAGTCATTACCTTCTACCTCTCGGTAGGTTCGCGG
ACTCTGGTCACGATATAGGTGCTCCCGCGAAGGGAGGGACACAAGTTTAT
ATCGAAGATAGTGCTCTTGCAACGATAGCCCCGTCTCGCCTAGCAGTTCA
TTCTGCTACTCACGTCGACATCAGCGCTTTTCACTGCTCCTTTGGTCATG
CGAACGGGTTCCTACTTCGAGAGACAGCAAAGCAGCGTGGTGTGGTACTA
ACTGGAGAGCTGCGACGGTGCAGGGGATGTGCGATGGTGAAGGGCCTGCG
CGAGCCGATCAGCAAGGCACCAGCTCCCAGAGCAGTTAAGGAACGAAGCC
TCACTTATGTTGATACTTGTGGTCCAAAGGGAGTTTGGGGTGTTGGCGGG
GTTCGTTTTATGAGGATTGTTAAGGATAGTTTCTCACGCAAATCAACTGT
ATACTTCATGCGAAGTAAAAGCAAGGTAGGAGGGCACCTCAAACAATACC
TAGCAGACACTAGGTCAGACAGTATTCCATCGTCAGCTGGAGTAATCCGA
ACTGACAATACTGCGGAGTTCAGAGAAGGAGAGTTTGCCGAGATCTGTAG
GGAGCAAGGTATTAGACAAGAGTGTATTACACGCGATAGGCCACCGTACA
ATGGTGTTGCTGAGAGAGGTATCGCAATGATCGAGTCGGCTGGTTTGTCT
GCTCAGATTCAGGCCAAATACCTTTTTCCTGGTGTGAAGATTCCGTCTGG
TGATTCGTTGTGGTCATTACGAAATCTCTGGGCGTGCCACGCTCTGATCT
GTACTGAAACAAGAGCGAACGTAGGTTACATGTCGCCGTACGAGCTCTGG
TATGGCAAGAGGGACACAAGTTTATATCGAAGATAGTGCTCTTGCAACGA
TAGCCCCGTCTCGCCTAGCAGTTCATTCTGCTACTCACGTCGACATCAGC
GCTTTTCACTGCTCCTTTGGTCATGCGAACGGGTTCCTACTTCGAGAGAC
AGCAAAGCAGCGTGGTGTGGTACTAACTGGAGAGCTGCGACGGTGCAGGG
GATGTGCGATGGTGAAGGGCCTGCGCGAGCCGATCAGCAAGGCACCAGCT
CCCAGAGCAGTTAAGGAACGAAGCCTCACTTATGTTGATACTTGTGGTCC
AAAGGGAGTTTGGGGTGTTGGCGGGGTTCGTTTTATGAGGATTGTTAAGG
ATAGTTTCTCACGCAAATCAACTGTATACTTCATGCGAAGTAAAAGCAAG
GTAGGAGGGCACCTCAAACAATACCTAGCAGACACTAGGTCAGACAGTAT
TCCATCGTCAGCTGGAGTAATCCGAACTGACAATACTGCGGAGTTCAGAG
AAGGAGAGTTTGCCGAGATCTGTAGGGAGCAAGGTATTAGACAAGAGTGT
ATTACACGCGATAGGCCACCGTACAATGGTGTTGCTGAGAGAGGTATCGC
AATGATCGAGTCGGCTGGTTTGTCTGCTCAGATTCAGGCCAAATACCTTT
TTCCTGGTGTGAAGATTCCGTCTGGTGATTCGTTGTGGTCATTACGAAAT
CTCTGGGCGTGCCACGCTCTGATCTGTACTGAAACAAGAGCGAACGTAGG
TTACATGTCGCCGTACGAGCTCTGGTATGGCAAG
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