mRNA_H-paniculata_contig3868.10104.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3868.10104.1
Unique NamemRNA_H-paniculata_contig3868.10104.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3868.10104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3868contigH-paniculata_contig3868:2407..2896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size490
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3868.10104.1prot_H-paniculata_contig3868.10104.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3868 2454..2756 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930186.8873994-UTR-H-paniculata_contig3868:2406..24531622930186.8873994-UTR-H-paniculata_contig3868:2406..2453Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3868 2407..2453 +
1691481183.1364522-UTR-H-paniculata_contig3868:2406..24531691481183.1364522-UTR-H-paniculata_contig3868:2406..2453Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3868 2407..2453 +
1622930186.9169455-UTR-H-paniculata_contig3868:2756..28961622930186.9169455-UTR-H-paniculata_contig3868:2756..2896Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3868 2757..2896 +
1691481183.1582665-UTR-H-paniculata_contig3868:2756..28961691481183.1582665-UTR-H-paniculata_contig3868:2756..2896Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3868 2757..2896 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930186.9013789-CDS-H-paniculata_contig3868:2453..27561622930186.9013789-CDS-H-paniculata_contig3868:2453..2756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3868 2454..2756 +
1691481183.146341-CDS-H-paniculata_contig3868:2453..27561691481183.146341-CDS-H-paniculata_contig3868:2453..2756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3868 2454..2756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3868.10104.1

>prot_H-paniculata_contig3868.10104.1 ID=prot_H-paniculata_contig3868.10104.1|Name=mRNA_H-paniculata_contig3868.10104.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MYSYYLLTKNKERRKEEKRQAGDPSLLFFRLYTVNHSCTRTTHHPHNRQR
ATRGGNAQVINYLVQLPSYKVPFFIHKAQHGTSISLITRNKQNAPPIETT
*
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mRNA from alignment at H-paniculata_contig3868:2407..2896+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3868.10104.1 ID=mRNA_H-paniculata_contig3868.10104.1|Name=mRNA_H-paniculata_contig3868.10104.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=490bp|location=Sequence derived from alignment at H-paniculata_contig3868:2407..2896+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAAAAATGCGACAAAAGACATGGGCAGCAGCAGCAGCAACTTAACATG
TATTCCTATTATTTGTTGACAAAAAACAAAGAACGGAGAAAAGAAGAGAA
ACGGCAGGCAGGAGACCCCTCTCTTTTGTTCTTTAGGCTCTACACGGTAA
ATCATTCTTGTACCCGAACAACACACCACCCACACAACAGACAGAGAGCA
ACCAGGGGGGGAAACGCCCAAGTGATAAATTACCTCGTTCAATTACCTTC
CTATAAAGTACCTTTCTTCATACACAAAGCGCAGCACGGGACTAGTATAT
CATTAATAACACGCAACAAACAAAATGCCCCCCCCATAGAAACGACTTAA
ATCCAACGTATTCCTTACACCCCTTCCCCAGTCGGCCCTTGAACAGAAGA
CATGAAAAATGCCAGTGTGTATCAAACGCTCCGGACACCAAACATGCATC
TCGAATTTCCTGTAATTTGTCACCGGGATTTTTTCGTGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig3868:2407..2896+

>mRNA_H-paniculata_contig3868.10104.1 ID=mRNA_H-paniculata_contig3868.10104.1|Name=mRNA_H-paniculata_contig3868.10104.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig3868:2407..2896+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATTCCTATTATTTGTTGACAAAAAACAAAGAACGGAGAAAAGAAGA
GAAACGGCAGGCAGGAGACCCCTCTCTTTTGTTCTTTAGGCTCTACACGG
TAAATCATTCTTGTACCCGAACAACACACCACCCACACAACAGACAGAGA
GCAACCAGGGGGGGAAACGCCCAAGTGATAAATTACCTCGTTCAATTACC
TTCCTATAAAGTACCTTTCTTCATACACAAAGCGCAGCACGGGACTAGTA
TATCATTAATAACACGCAACAAACAAAATGCCCCCCCCATAGAAACGACT
TAAATGTATTCCTATTATTTGTTGACAAAAAACAAAGAACGGAGAAAAGA
AGAGAAACGGCAGGCAGGAGACCCCTCTCTTTTGTTCTTTAGGCTCTACA
CGGTAAATCATTCTTGTACCCGAACAACACACCACCCACACAACAGACAG
AGAGCAACCAGGGGGGGAAACGCCCAAGTGATAAATTACCTCGTTCAATT
ACCTTCCTATAAAGTACCTTTCTTCATACACAAAGCGCAGCACGGGACTA
GTATATCATTAATAACACGCAACAAACAAAATGCCCCCCCCATAGAAACG
ACTTAA
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