mRNA_H-paniculata_contig38675.10103.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38675.10103.1
Unique NamemRNA_H-paniculata_contig38675.10103.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig38675.10103.1 vs. uniprot
Match: A0A6H5L626_9PHAE (MCM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L626_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 4.370e-30
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 VTLSKEGTSGDVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAG 171
            VTLSKEGTSG+VGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAG
Sbjct:  351 VTLSKEGTSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAG 407
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BLAST of mRNA_H-paniculata_contig38675.10103.1 vs. uniprot
Match: D7FZW5_ECTSI (MCM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW5_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 2.290e-29
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 VTLSKEGTSGDVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAG 171
            VTLSKEGTSG+VGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAG
Sbjct:  466 VTLSKEGTSGEVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAG 522
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BLAST of mRNA_H-paniculata_contig38675.10103.1 vs. uniprot
Match: A0A7S3Y7D2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7D2_HETAK)

HSP 1 Score: 102 bits (253), Expect = 7.120e-27
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    1 VTLSKEGTSGDVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAG 171
            VTL+K+G  GDVGLEAGALVLSDQG CCIDEFDKM CD HALLEAMEQQ+ISIAK+G
Sbjct:   33 VTLAKDGKRGDVGLEAGALVLSDQGVCCIDEFDKMACDYHALLEAMEQQQISIAKSG 89
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BLAST of mRNA_H-paniculata_contig38675.10103.1 vs. uniprot
Match: A0A3M6T405_POCDA (MCM domain-containing protein n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6T405_POCDA)

HSP 1 Score: 94.7 bits (234), Expect = 2.940e-21
Identity = 47/57 (82.46%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 VTLSKEGTSGDVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAG 171
            VTLSKEG+SGD  LEAGALVL DQG CCIDEFDKMG    ALLEAMEQQ ISIAKAG
Sbjct:  422 VTLSKEGSSGDYSLEAGALVLGDQGCCCIDEFDKMGSQHQALLEAMEQQSISIAKAG 478
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BLAST of mRNA_H-paniculata_contig38675.10103.1 vs. uniprot
Match: A0A2C9L180_BIOGL (MCM domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9L180_BIOGL)

HSP 1 Score: 94.4 bits (233), Expect = 4.020e-21
Identity = 47/57 (82.46%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 VTLSKEGTSGDVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAG 171
            VTLSKEG SGD  LEAGALVL+DQG CCIDEFDKMG    ALLEAMEQQ ISIAKAG
Sbjct:  437 VTLSKEGGSGDYALEAGALVLADQGCCCIDEFDKMGAQHQALLEAMEQQSISIAKAG 493
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BLAST of mRNA_H-paniculata_contig38675.10103.1 vs. uniprot
Match: UPI0010FCA2A1 (DNA helicase MCM8-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI0010FCA2A1)

HSP 1 Score: 94.0 bits (232), Expect = 5.490e-21
Identity = 47/57 (82.46%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 VTLSKEGTSGDVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAG 171
            VTLSKEG+SGD  LEAGALVL DQG CCIDEFDKMG    ALLEAMEQQ ISIAKAG
Sbjct:  470 VTLSKEGSSGDYSLEAGALVLGDQGCCCIDEFDKMGHQHQALLEAMEQQSISIAKAG 526
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BLAST of mRNA_H-paniculata_contig38675.10103.1 vs. uniprot
Match: A0A1S3JYB5_LINUN (DNA helicase MCM8 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JYB5_LINUN)

HSP 1 Score: 94.0 bits (232), Expect = 5.490e-21
Identity = 47/57 (82.46%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 VTLSKEGTSGDVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAG 171
            VTLSKEG SGD  LEAGALVL+DQG CCIDEFDKMG    ALLEAMEQQ ISIAKAG
Sbjct:  505 VTLSKEGGSGDYALEAGALVLADQGCCCIDEFDKMGSQHQALLEAMEQQSISIAKAG 561
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BLAST of mRNA_H-paniculata_contig38675.10103.1 vs. uniprot
Match: A0A433T1R9_ELYCH (MCM domain-containing protein (Fragment) n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433T1R9_ELYCH)

HSP 1 Score: 93.2 bits (230), Expect = 7.780e-21
Identity = 46/57 (80.70%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 VTLSKEGTSGDVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAG 171
            VTLSK+G SGD  LEAGALVL+DQG CCIDEFDKMG    ALLEAMEQQ ISIAKAG
Sbjct:   71 VTLSKDGGSGDFALEAGALVLADQGCCCIDEFDKMGAQHQALLEAMEQQSISIAKAG 127
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BLAST of mRNA_H-paniculata_contig38675.10103.1 vs. uniprot
Match: UPI000A2A74C5 (DNA helicase MCM8 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A74C5)

HSP 1 Score: 92.8 bits (229), Expect = 1.400e-20
Identity = 46/57 (80.70%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 VTLSKEGTSGDVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAG 171
            VTLSK+G+SGD  LEAGALVL DQG CCIDEFDKMG    ALLEAMEQQ ISIAKAG
Sbjct:  456 VTLSKDGSSGDYALEAGALVLGDQGCCCIDEFDKMGNQHQALLEAMEQQSISIAKAG 512
[Close]
BLAST of mRNA_H-paniculata_contig38675.10103.1 vs. uniprot
Match: A0A8B7YXA5_ACAPL (DNA helicase MCM8-like n=2 Tax=Valvatida TaxID=41166 RepID=A0A8B7YXA5_ACAPL)

HSP 1 Score: 92.8 bits (229), Expect = 1.400e-20
Identity = 47/57 (82.46%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 VTLSKEGTSGDVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQRISIAKAG 171
            VTLSKEG SGD  LEAGALVL DQG CCIDEFDKMG    ALLEAMEQQ ISIAKAG
Sbjct:  504 VTLSKEGGSGDYALEAGALVLGDQGCCCIDEFDKMGNQHQALLEAMEQQSISIAKAG 560
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38675.10103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L626_9PHAE4.370e-3098.25MCM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FZW5_ECTSI2.290e-2998.25MCM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3Y7D2_HETAK7.120e-2784.21Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A3M6T405_POCDA2.940e-2182.46MCM domain-containing protein n=2 Tax=Pocillopora ... [more]
A0A2C9L180_BIOGL4.020e-2182.46MCM domain-containing protein n=1 Tax=Biomphalaria... [more]
UPI0010FCA2A15.490e-2182.46DNA helicase MCM8-like n=1 Tax=Acropora millepora ... [more]
A0A1S3JYB5_LINUN5.490e-2182.46DNA helicase MCM8 n=1 Tax=Lingula unguis TaxID=757... [more]
A0A433T1R9_ELYCH7.780e-2180.70MCM domain-containing protein (Fragment) n=1 Tax=E... [more]
UPI000A2A74C51.400e-2080.70DNA helicase MCM8 n=1 Tax=Exaiptasia diaphana TaxI... [more]
A0A8B7YXA5_ACAPL1.400e-2082.46DNA helicase MCM8-like n=2 Tax=Valvatida TaxID=411... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38675contigH-paniculata_contig38675:1664..1843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue2.9e-24
Seed eggNOG ortholog2880.D7FZW5
Preferred nameMCM8
KEGG koko:K10737
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000082,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006260,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007140,GO:0007143,GO:0007275,GO:0007276,GO:0007292,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009555,GO:0009987,GO:0016043,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0042555,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044843,GO:0046483,GO:0048229,GO:0048232,GO:0048285,GO:0048609,GO:0048856,GO:0050896,GO:0051321,GO:0051704,GO:0051716,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097362,GO:0140013,GO:1901360,GO:1901576,GO:1903046,GO:1903047
EggNOG free text desc.DNA replication initiation
EggNOG OGsCOG1241@1,KOG0480@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930186.85094-CDS-H-paniculata_contig38675:1663..18431622930186.85094-CDS-H-paniculata_contig38675:1663..1843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38675 1664..1843 -
1691481183.1167362-CDS-H-paniculata_contig38675:1663..18431691481183.1167362-CDS-H-paniculata_contig38675:1663..1843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38675 1664..1843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38675.10103.1prot_H-paniculata_contig38675.10103.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38675 1664..1843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38675.10103.1

>prot_H-paniculata_contig38675.10103.1 ID=prot_H-paniculata_contig38675.10103.1|Name=mRNA_H-paniculata_contig38675.10103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
VTLSKEGTSGDVGLEAGALVLSDQGTCCIDEFDKMGCDPHALLEAMEQQR
ISIAKAGGC*
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mRNA from alignment at H-paniculata_contig38675:1664..1843-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38675.10103.1 ID=mRNA_H-paniculata_contig38675.10103.1|Name=mRNA_H-paniculata_contig38675.10103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig38675:1664..1843- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGACCTTGAGCAAGGAGGGCACGTCCGGAGACGTAGGGTTGGAGGCTGG
AGCCCTTGTGCTGTCGGACCAGGGCACGTGCTGCATCGACGAGTTCGACA
AGATGGGCTGCGATCCGCACGCCTTGCTCGAGGCCATGGAGCAGCAGAGG
ATTTCCATCGCCAAAGCGGGTGGGTGCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig38675:1664..1843-

>mRNA_H-paniculata_contig38675.10103.1 ID=mRNA_H-paniculata_contig38675.10103.1|Name=mRNA_H-paniculata_contig38675.10103.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig38675:1664..1843- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGACCTTGAGCAAGGAGGGCACGTCCGGAGACGTAGGGTTGGAGGCTGG
AGCCCTTGTGCTGTCGGACCAGGGCACGTGCTGCATCGACGAGTTCGACA
AGATGGGCTGCGATCCGCACGCCTTGCTCGAGGCCATGGAGCAGCAGAGG
ATTTCCATCGCCAAAGCGGGTGGGTGCTGAGTGACCTTGAGCAAGGAGGG
CACGTCCGGAGACGTAGGGTTGGAGGCTGGAGCCCTTGTGCTGTCGGACC
AGGGCACGTGCTGCATCGACGAGTTCGACAAGATGGGCTGCGATCCGCAC
GCCTTGCTCGAGGCCATGGAGCAGCAGAGGATTTCCATCGCCAAAGCGGG
TGGGTGCTGA
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