mRNA_H-paniculata_contig38591.10091.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38591.10091.1
Unique NamemRNA_H-paniculata_contig38591.10091.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig38591.10091.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 4.990e-29
Identity = 61/88 (69.32%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   16 QAHGAARTFAKQLVDQSMLQAVGDAYRVHDLVLRFLKPKLKANPSRLVVATSRAEEYCGQLRVLHRYTEDGATAGGLYSLIALWRSVE 279
            +A GA +TFA QLVDQSMLQ  GDA+RVHDLVL FLKPKLKA+P+R  +ATSR  EY GQL+VL RY  DG T+ G+Y+L+ALWRSVE
Sbjct:  491 EAPGATKTFAAQLVDQSMLQPAGDAFRVHDLVLLFLKPKLKADPNR-PIATSRFAEYLGQLKVLRRYLGDGETSDGVYALMALWRSVE 577          
BLAST of mRNA_H-paniculata_contig38591.10091.1 vs. uniprot
Match: A0A6H5KMV3_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMV3_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 9.910e-21
Identity = 51/73 (69.86%), Postives = 56/73 (76.71%), Query Frame = 1
Query:   19 AHGAARTFAKQLVDQSMLQAVGDAYRVHDLVLRFLKPKLKANPSRLVVATSRAEEYCGQLRVLHRYTEDGATA 237
            A GAA+TFA+QLVDQSMLQ  GDA RVHDLVL FLKPKLKA+ SR  + TSR  EY G L+VL RY EDG  A
Sbjct:  434 APGAAKTFARQLVDQSMLQPAGDALRVHDLVLLFLKPKLKADSSR-PITTSRIAEYLGHLKVLRRYVEDGRRA 505          
BLAST of mRNA_H-paniculata_contig38591.10091.1 vs. uniprot
Match: A0A6H5JLW6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW6_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 8.890e-14
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 1
Query:   16 QAHGAARTFAKQLVDQSMLQAVGDAYRVHDLVLRFLKPKLKA-NPSRLVVATSRAEEYCGQLRVLHRYTEDGATAGGLYSLIALWRSVE 279
            Q  G +  F  QLVD+S++QAV   YR+HDLVL F+K KL      R+V+ TSR  +Y  +L VL  Y E     GGL++L+ LW SVE
Sbjct:  243 QGPGNSLLFVGQLVDKSLVQAVEHKYRLHDLVLAFVKSKLCCLKMERVVLVTSRLAQYLSRLSVLQEYAEADEMQGGLFALMGLWGSVE 331          
BLAST of mRNA_H-paniculata_contig38591.10091.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 4.000e-10
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   34 RTFAKQLVDQSMLQAVGDA-YRVHDLVLRFLKPKLKANPSRLVVATSRAEEYCGQLRVLHRY--TEDGATAGGLYSLIALWRSVE 279
            R  A+ LV + +LQAVG + YRVHDLVL F+K  ++A    +  AT+   +Y G++ VL  Y   E GA   GL+ L ALWRSVE
Sbjct:  307 REEAEGLVSKCLLQAVGGSGYRVHDLVLEFVKTSIRAEEEMVEKATALQAQYLGRVDVLKSYGDPEHGAGNQGLFFLDALWRSVE 391          
BLAST of mRNA_H-paniculata_contig38591.10091.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.890e-9
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 1
Query:   25 GAARTFAKQLVDQSMLQAVGDA-YRVHDLVLRFLKPKLKANPSRLVVATSRAEEYCGQLRVLHRYT--EDGATAGGLYSLIALWRSVE 279
            G  R  A+ LV + +LQ VG   YRVHDLVL F+K K+KA+        +   ++ G+L VL  Y   E GA   GL+ L ALWRSVE
Sbjct:  440 GGTREDAEGLVSKCLLQDVGGGGYRVHDLVLDFVKIKIKADMEMAKKIAALQAQFLGRLNVLKSYEHPEHGAGNQGLFVLDALWRSVE 527          
BLAST of mRNA_H-paniculata_contig38591.10091.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.560e-7
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   43 AKQLVDQSMLQAV-GDAYRVHDLVLRFLKPKLKANPSRLVVATSRAEEYCGQLRVLHRYTED--GATAGGLYSLIALWRSVE 279
            A+ LV++ +LQ V G  YRVHDL+L++L+ K+K +  R+  AT+   +Y G+L V+  Y +   GA   GL+ L  LWR +E
Sbjct:  546 AEGLVNKCLLQDVDGVGYRVHDLLLKYLRVKIKQDGERVKKATALQAQYLGRLDVVMSYGDQKHGADNQGLFGLGTLWRCLE 627          
BLAST of mRNA_H-paniculata_contig38591.10091.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 7.440e-7
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 1
Query:   31 ARTFAKQLVDQSMLQAVGDAYRVHDLVLRFLKPKLKANPSRLVVATSRAEEYCGQLRVLHRYTEDGATAGGLYSLIALWRSV 276
            AR  A   V  S+LQ V  ++R+HDL+L F++ + +     +  A  R  +Y G+L VL  Y   G +  G YSLI LWR +
Sbjct:  522 ARNEADFFVSNSLLQEVDSSFRLHDLLLDFVRTRCEKKI--IDEAVKRQSQYLGRLAVLQDYEAKGDSLEGFYSLIVLWRKL 601          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38591.10091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G6W2_ECTSI4.990e-2969.32NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KMV3_9PHAE9.910e-2169.86NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JLW6_9PHAE8.890e-1447.19NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5LJA6_9PHAE4.000e-1047.06NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KU94_9PHAE6.890e-945.45NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LPV9_ECTSI1.560e-741.46NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
A0A6H5JJK0_9PHAE7.440e-737.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38591contigH-paniculata_contig38591:923..1201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue5.2e-25
Seed eggNOG ortholog2880.D7G6W2
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons1
Model size281
Cds size279
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930184.5567324-CDS-H-paniculata_contig38591:922..12011622930184.5567324-CDS-H-paniculata_contig38591:922..1201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38591 923..1201 +
1691481181.9428663-CDS-H-paniculata_contig38591:922..12011691481181.9428663-CDS-H-paniculata_contig38591:922..1201Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38591 923..1201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38591.10091.1prot_H-paniculata_contig38591.10091.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38591 923..1201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38591.10091.1

>prot_H-paniculata_contig38591.10091.1 ID=prot_H-paniculata_contig38591.10091.1|Name=mRNA_H-paniculata_contig38591.10091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
MTCPQQAHGAARTFAKQLVDQSMLQAVGDAYRVHDLVLRFLKPKLKANPS
RLVVATSRAEEYCGQLRVLHRYTEDGATAGGLYSLIALWRSVE
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mRNA from alignment at H-paniculata_contig38591:923..1201+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38591.10091.1 ID=mRNA_H-paniculata_contig38591.10091.1|Name=mRNA_H-paniculata_contig38591.10091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at H-paniculata_contig38591:923..1201+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGTGTCCTCAACAGGCCCATGGGGCTGCGCGCACATTTGCTAAACA GCTTGTGGATCAGTCCATGCTCCAAGCTGTAGGAGATGCTTACCGCGTTC ACGACCTTGTCTTGCGTTTCCTGAAGCCCAAACTCAAGGCCAACCCGAGT CGGCTCGTCGTAGCAACCTCGCGCGCTGAGGAATATTGCGGCCAGCTAAG GGTTCTGCATAGATATACCGAGGATGGGGCGACAGCTGGCGGTTTGTACT CCCTGATCGCCCTTTGGAGGTCGGTGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig38591:923..1201+

>mRNA_H-paniculata_contig38591.10091.1 ID=mRNA_H-paniculata_contig38591.10091.1|Name=mRNA_H-paniculata_contig38591.10091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig38591:923..1201+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGTGTCCTCAACAGGCCCATGGGGCTGCGCGCACATTTGCTAAACA
GCTTGTGGATCAGTCCATGCTCCAAGCTGTAGGAGATGCTTACCGCGTTC
ACGACCTTGTCTTGCGTTTCCTGAAGCCCAAACTCAAGGCCAACCCGAGT
CGGCTCGTCGTAGCAACCTCGCGCGCTGAGGAATATTGCGGCCAGCTAAG
GGTTCTGCATAGATATACCGAGGATGGGGCGACAGCTGGCGGTTTGTACT
CCCTGATCGCCCTTTGGAGGTCGGTGGAGATGACGTGTCCTCAACAGGCC
CATGGGGCTGCGCGCACATTTGCTAAACAGCTTGTGGATCAGTCCATGCT
CCAAGCTGTAGGAGATGCTTACCGCGTTCACGACCTTGTCTTGCGTTTCC
TGAAGCCCAAACTCAAGGCCAACCCGAGTCGGCTCGTCGTAGCAACCTCG
CGCGCTGAGGAATATTGCGGCCAGCTAAGGGTTCTGCATAGATATACCGA
GGATGGGGCGACAGCTGGCGGTTTGTACTCCCTGATCGCCCTTTGGAGGT
CGGTGGAG
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