mRNA_H-paniculata_contig3838.10053.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3838.10053.1
Unique NamemRNA_H-paniculata_contig3838.10053.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3838.10053.1 vs. uniprot
Match: D7FW31_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW31_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 2.670e-16
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 GIRARVGEETWRPYLEPHTLRFFSRAKRNGLPDTYQQITPDEAKERKEVAATLAASRADKVRLLA 195
            G+RARVGE  WRPYLEPH LR F RAK+NGLPD Y +I+  E  ER +VA  L+A+R D++RL A
Sbjct:  443 GVRARVGEGVWRPYLEPHVLRVFFRAKKNGLPDAYHKISEAEVAERGQVATELSATRDDQMRLCA 507
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BLAST of mRNA_H-paniculata_contig3838.10053.1 vs. uniprot
Match: A0A6H5JF42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF42_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 5.090e-16
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    4 IRARVGEETWRPYLEPHTLRFFSRAKRNGLPDTYQQITPDEAKERKEVAATLAASRADKVRLLA 195
            +RARVGE  WRPYLEPH LR F RAK+NGLPD Y +I+  EA ER +VA  L+A+R D++RL A
Sbjct: 1070 VRARVGEGVWRPYLEPHVLRVFFRAKKNGLPDAYHKISEAEAAERGQVATELSATRDDQMRLCA 1133
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3838.10053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW31_ECTSI2.670e-1661.54Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JF42_9PHAE5.090e-1662.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3838contigH-paniculata_contig3838:12243..12922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue1.7e-14
Seed eggNOG ortholog2880.D7FW31
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size197
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930179.7640731-CDS-H-paniculata_contig3838:12243..123271622930179.7640731-CDS-H-paniculata_contig3838:12243..12327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3838 12244..12327 -
1691481179.735862-CDS-H-paniculata_contig3838:12243..123271691481179.735862-CDS-H-paniculata_contig3838:12243..12327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3838 12244..12327 -
1622930179.7784224-CDS-H-paniculata_contig3838:12811..129221622930179.7784224-CDS-H-paniculata_contig3838:12811..12922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3838 12812..12922 -
1691481179.751468-CDS-H-paniculata_contig3838:12811..129221691481179.751468-CDS-H-paniculata_contig3838:12811..12922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3838 12812..12922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3838.10053.1prot_H-paniculata_contig3838.10053.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3838 12244..12922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3838.10053.1

>prot_H-paniculata_contig3838.10053.1 ID=prot_H-paniculata_contig3838.10053.1|Name=mRNA_H-paniculata_contig3838.10053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
GIRARVGEETWRPYLEPHTLRFFSRAKRNGLPDTYQQITPDEAKERKEVA
ATLAASRADKVRLLA
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mRNA from alignment at H-paniculata_contig3838:12243..12922-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3838.10053.1 ID=mRNA_H-paniculata_contig3838.10053.1|Name=mRNA_H-paniculata_contig3838.10053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=680bp|location=Sequence derived from alignment at H-paniculata_contig3838:12243..12922- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTATTCGAGCTCGCGTCGGGGAGGAGACCTGGAGACCCTACCTGGAGCC
CCATACGCTGCGTTTCTTCTCCAGAGCAAAGAGAAATGGGTTGCCCGACA
CGTATCAGCAGGTACCACTGTTGTTGTAGTGCGAAGTATAACATGCCGGC
AGGCATCTTCGCTAGTCAATGATACTGTTTAAATTATTTTTACCGAAAAC
CGTTTCATCTTCAATGAAACGATCGATTCTCAAGTCGATGATCTGCTGAT
TATTACTGTATCATCAGCAAATTTCATCTCGACGAACACATGTTGAACGG
GAAATAGTGTCTGAATTATCTTGTATAGCACTGGCTGCTGCTATTGCAAC
TGTAGAACGGTGTGAGGTGTTCACAAAGGAGTGCGTGTCGGAATCGCACG
ACATTATCACAGCCATTATTGACAGTACTTCTAGTATATACTCAAGAAGT
ACGCTTTTTGGCCTTGACAAACCACGGAATATTTATGTACAAGTAGAGTA
GTCGTGAACAAGCCTTGCCTCTTCGTCATCGGAGGATACATGAAATCCTT
TATCCCCCATCTTCAATGCCGTTTTTTCCATCTGATTGCGCCCAGATCAC
ACCCGATGAGGCGAAGGAGAGAAAAGAGGTTGCGGCCACACTCGCCGCCT
CTCGGGCCGACAAGGTGCGACTACTCGCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig3838:12243..12922-

>mRNA_H-paniculata_contig3838.10053.1 ID=mRNA_H-paniculata_contig3838.10053.1|Name=mRNA_H-paniculata_contig3838.10053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig3838:12243..12922- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTATTCGAGCTCGCGTCGGGGAGGAGACCTGGAGACCCTACCTGGAGCC
CCATACGCTGCGTTTCTTCTCCAGAGCAAAGAGAAATGGGTTGCCCGACA
CGTATCAGCAGGGTATTCGAGCTCGCGTCGGGGAGGAGACCTGGAGACCC
TACCTGGAGCCCCATACGCTGCGTTTCTTCTCCAGAGCAAAGAGAAATGG
GTTGCCCGACACGTATCAGCAGATCACACCCGATGAGGCGAAGGAGAGAA
AAGAGGTTGCGGCCACACTCGCCGCCTCTCGGGCCGACAAGGTGCGACTA
CTCGCCATCACACCCGATGAGGCGAAGGAGAGAAAAGAGGTTGCGGCCAC
ACTCGCCGCCTCTCGGGCCGACAAGGTGCGACTACTCGCC
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