prot_H-paniculata_contig11563.1000.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig11563.1000.1
Unique Nameprot_H-paniculata_contig11563.1000.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length76
Homology
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BLAST of mRNA_H-paniculata_contig11563.1000.1 vs. uniprot
Match: A0A834XC68_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834XC68_9FABA)

HSP 1 Score: 55.8 bits (133), Expect = 2.730e-7
Identity = 28/74 (37.84%), Postives = 39/74 (52.70%), Query Frame = 0 
Query:    3 WNSDTGAIDHMTSDETAFEDYTPAFPWIMCEIANGNFVLMAGWGRLVLLVTAKLGRVAHVPELGCNLISTRRAT 76
            W  D+GA DHMTS+++ F    P    +  +IA G    + G G + +  T  L  V HVP L CNL+S  + T
Sbjct:   95 WIVDSGASDHMTSNDSLFSTLAPCKTSLQVKIAYGTMAKVLGIGSVKISDTITLLNVLHVPTLACNLLSISKLT 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11563.1000.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A834XC68_9FABA2.730e-737.84Retrovirus-related Pol polyprotein from transposon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 29..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11563contigH-paniculata_contig11563:932..1183 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11563.1000.1mRNA_H-paniculata_contig11563.1000.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig11563 932..1183 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig11563.1000.1 ID=prot_H-paniculata_contig11563.1000.1|Name=mRNA_H-paniculata_contig11563.1000.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
EHWNSDTGAIDHMTSDETAFEDYTPAFPWIMCEIANGNFVLMAGWGRLVL
LVTAKLGRVAHVPELGCNLISTRRAT
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