mRNA_H-paniculata_contig38056.9980.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38056.9980.1
Unique NamemRNA_H-paniculata_contig38056.9980.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38056.9980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38056contigH-paniculata_contig38056:1674..2004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size332
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930169.6654072-UTR-H-paniculata_contig38056:1673..17011622930169.6654072-UTR-H-paniculata_contig38056:1673..1701Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38056 1674..1701 +
1691481175.3656013-UTR-H-paniculata_contig38056:1673..17011691481175.3656013-UTR-H-paniculata_contig38056:1673..1701Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38056 1674..1701 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930169.679602-CDS-H-paniculata_contig38056:1701..20041622930169.679602-CDS-H-paniculata_contig38056:1701..2004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38056 1702..2004 +
1691481175.3736994-CDS-H-paniculata_contig38056:1701..20041691481175.3736994-CDS-H-paniculata_contig38056:1701..2004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38056 1702..2004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38056.9980.1prot_H-paniculata_contig38056.9980.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38056 1702..2004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38056.9980.1

>prot_H-paniculata_contig38056.9980.1 ID=prot_H-paniculata_contig38056.9980.1|Name=mRNA_H-paniculata_contig38056.9980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MFNNARRRGEAGMAGPVVFRQLIAEMARELLEVDLVQASTSLSSFMVAEG
SYLKDWLQTIKSTVNSLNTLGKAYAPNKDFVVCAVGASLHKQFPGVYAHL
P
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mRNA from alignment at H-paniculata_contig38056:1674..2004+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38056.9980.1 ID=mRNA_H-paniculata_contig38056.9980.1|Name=mRNA_H-paniculata_contig38056.9980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=331bp|location=Sequence derived from alignment at H-paniculata_contig38056:1674..2004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACTAAATTCCACACCTCGGTGAACACTATGTTTAATAACGCACGTCGGA
GGGGGGAAGCAGGAATGGCAGGACCGGTGGTTTTCCGCCAACTGATAGCT
GAGATGGCAAGGGAGCTCCTGGAGGTGGATCTGGTCCAAGCGTCAACTTC
CCTGAGTTCTTTCATGGTAGCAGAAGGCAGCTATTTGAAAGACTGGTTGC
AAACGATCAAAAGTACGGTAAATTCGCTGAACACGCTGGGGAAAGCCTAC
GCCCCTAACAAGGACTTTGTAGTCTGCGCAGTAGGCGCGAGTCTGCACAA
ACAGTTTCCGGGAGTATATGCCCACCTACCT
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Coding sequence (CDS) from alignment at H-paniculata_contig38056:1674..2004+

>mRNA_H-paniculata_contig38056.9980.1 ID=mRNA_H-paniculata_contig38056.9980.1|Name=mRNA_H-paniculata_contig38056.9980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig38056:1674..2004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTAATAACGCACGTCGGAGGGGGGAAGCAGGAATGGCAGGACCGGT
GGTTTTCCGCCAACTGATAGCTGAGATGGCAAGGGAGCTCCTGGAGGTGG
ATCTGGTCCAAGCGTCAACTTCCCTGAGTTCTTTCATGGTAGCAGAAGGC
AGCTATTTGAAAGACTGGTTGCAAACGATCAAAAGTACGGTAAATTCGCT
GAACACGCTGGGGAAAGCCTACGCCCCTAACAAGGACTTTGTAGTCTGCG
CAGTAGGCGCGAGTCTGCACAAACAGTTTCCGGGAGTATATGCCCACCTA
CCTATGTTTAATAACGCACGTCGGAGGGGGGAAGCAGGAATGGCAGGACC
GGTGGTTTTCCGCCAACTGATAGCTGAGATGGCAAGGGAGCTCCTGGAGG
TGGATCTGGTCCAAGCGTCAACTTCCCTGAGTTCTTTCATGGTAGCAGAA
GGCAGCTATTTGAAAGACTGGTTGCAAACGATCAAAAGTACGGTAAATTC
GCTGAACACGCTGGGGAAAGCCTACGCCCCTAACAAGGACTTTGTAGTCT
GCGCAGTAGGCGCGAGTCTGCACAAACAGTTTCCGGGAGTATATGCCCAC
CTACCT
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