prot_H-paniculata_contig3805.9978.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig3805.9978.1
Unique Nameprot_H-paniculata_contig3805.9978.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length611
Homology
BLAST of mRNA_H-paniculata_contig3805.9978.1 vs. uniprot
Match: D8LGZ7_ECTSI (DNA-directed RNA polymerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ7_ECTSI)

HSP 1 Score: 808 bits (2086), Expect = 4.520e-282
Identity = 424/611 (69.39%), Postives = 471/611 (77.09%), Query Frame = 0
Query:    1 VGTGDTRRLQRRAGDMPVMVGSKRCHLQGHGPAQLCRGREESGEMGGYFIVRGIERVIRLLQVPKRNYAHAITRGTFKDRGTGYSDMGVMMRCGRKDLSTVTVTVHYITTGGCTLRFAVKKQEFMVPVVIVLKALRDTTDREIHERLLQGQMKNTFLAAHVEVLLRDGKRWGLHSRQESLAFLGTTFRTVMQATASTTDAQIGKMVINRYILVHLNRHNDKQECILLMLRKLYAFVQGRCREDKPDALANHELLLPGHLYGMIIKERMESWLEKVRQHITRDARMYPAKARLQVRDDKYVGKLLDRYGLSVGQGMATFLSTGNITSASGLDLMQVSGFTIVAERINFLRYLAHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGSPCGLLNHLATQCRVVTGSGTKPPPPQSPSSLESILVSLGVTPAGTGAGDGSASLPYYLLPVMLNGRVIGGGSVATLARAAAELRRLKVMGGWGVGGKEEGGAGTGGGVLAAGAGGVDPTLEVGWLPPMKGGAGPYPGLYLASEGARMCRPVMHLPTGRLEWIGPLEQQFMEIACLADDVRAGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQVQCG 611
            VG GD  R Q+RAGD PVMVGS+RCHL+GHGPA+L RGREE+GEMGGYFIVRGIERVIRLLQVPKRNYAHAI+RGTFKDRG GYS+ GVMMRC RKD ST+TVT+HYI+TGG TLRF+V+KQEF+VPVVI+LKALRDT+DREIHER+LQGQ  NTFLAAHVEVLLRDGKRWGLHSR ESLAFLG+TFRTV+QA A+ TD ++GK VI+R          +   C              RCR + P             L  + +       L  VRQ I RDARM  AKA +QVRD K++ K LDR+G +VGQGM+TFLSTGN+ S SGLDLMQVSGFTIVAERINFLRYLAHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGSPCGLLNHLAT C+VV G G  PPP +SP SLES+LV LGV PAGTGAGDG+ SLP   LPV+++GRV+GGGS ATL RA                                    VDPTLEVGW+PPMKGGAGPYPGL+L SEGARMCRPV+HL +GR+EWIGP+ QQFMEIACLADDVR GLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQ Q G
Sbjct:  105 VGDGDVVRTQKRAGDCPVMVGSRRCHLRGHGPARLTRGREEAGEMGGYFIVRGIERVIRLLQVPKRNYAHAISRGTFKDRGQGYSEKGVMMRCARKDQSTLTVTLHYISTGGATLRFSVRKQEFLVPVVIILKALRDTSDREIHERVLQGQKDNTFLAAHVEVLLRDGKRWGLHSRMESLAFLGSTFRTVLQAPATATDIELGKKVIDRV---------ETGWC-----------WPWRCRWNWPRCC----------LRALFVS------LPAVRQLIGRDARMDQAKAVMQVRDAKHMAKYLDRFGSAVGQGMSTFLSTGNVISTSGLDLMQVSGFTIVAERINFLRYLAHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGSPCGLLNHLATACKVVCGGGKAPPPAESPLSLESLLVRLGVAPAGTGAGDGALSLPSSFLPVLVDGRVVGGGSEATLKRAXXXXXXXXXXXXXXXXXXX----------XXXXXXXVDPTLEVGWVPPMKGGAGPYPGLFLNSEGARMCRPVLHLQSGRMEWIGPMAQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMG 669          
BLAST of mRNA_H-paniculata_contig3805.9978.1 vs. uniprot
Match: A0A835YVF9_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF9_9STRA)

HSP 1 Score: 649 bits (1675), Expect = 1.250e-218
Identity = 342/627 (54.55%), Postives = 430/627 (68.58%), Query Frame = 0
Query:    5 DTRRLQRRAGDMPVMVGSKRCHLQGHGPAQLCRGREESGEMGGYFIVRGIERVIRLLQVPKRNYAHAITRGTFKDRGTGYSDMGVMMRC--------------------GRKDLSTVTVTVHYITTGGCTLRFAVKKQEFMVPVVIVLKALRDTTDREIHERLLQGQMKNTFLAAHVEVLLRDGKRWGLHSRQESLAFLGTTFRTVMQATASTTDAQIGKMVINRYILVHLNRHNDKQECILLMLRKLYAFVQGRCREDKPDALANHELLLPGHLYGMIIKERMESWLEKVRQHITRDARMYPAKARLQVRDDKYVGKLLDRYGLSVGQGMATFLSTGNITSASGLDLMQVSGFTIVAERINFLRYLAHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGSPCGLLNHLATQCRVVTGSGTKPPPPQSPSSLESILVSLGVTPAGTGAGDGSASLPYYLLPVMLNGRVIGGGSVATLARAAAELRRLKVMGGWGVGGKEEGGAGTGGGVLAAGAGGVDPTLEVGWLPPMKGGAGPYPGLYLASEGARMCRPVMHLPTGRLEWIGPLEQQFMEIACLADDVRAGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQVQCG 611
            + +R+QRR G+ P+MV SKRCHL G GP ++   +EE  E+GGYFIV G+ERVIRLLQVP+RN+A AI R  FK+RG  YSD+GV MRC                    GR+D ST TVT+HY+TTGG TLR++V++ EF+VPV++V+KALR+ +DRE++ER+L G   NT LAA +EVLL D  R GLH+R++ LAFLG+ FR V   T   +D  +G  +INR++LVHL RH DKQE +L ML+K                        PGHL+ M +KE++   L KVR  + + +R+  AKA L  +D K + KL+DRYG+  GQ MA+FLSTGNIT+++GLDLMQ SGFT+VAERIN LRYL+HFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDG+PCGLLNH+A +C+                    ILVSLG+TPAG G+GDGS +LPYY +PVM++GRV+GGG+  TL   +  LRRLKV                      A    V+PT+EV  LPPMK G+GP+PGL+L +  +RM RPV+++   + EWIGPLEQ FMEIACLA + +    TH E+DPTNMLSL+ASLTPFSDYNQSPRNMYQ Q G
Sbjct:  145 EAQRVQRRLGECPIMVRSKRCHLAGLGPKEMVALKEEDTEIGGYFIVGGLERVIRLLQVPRRNHAQAIRRSAFKNRGQVYSDLGVSMRCDHSPLQLXXXXXXXXXXXXXGRRDHSTATVTLHYLTTGGATLRWSVRRAEFLVPVMVVIKALREISDRELYERVLAGDTANTQLAARLEVLLLDAARVGLHTREQCLAFLGSRFRAVGNRTDVHSDLALGIEIINRHVLVHLKRHEDKQETLLHMLKK------------------------PGHLFTMYMKEKLFDVLVKVRSELLKQSRIDVAKALLAAQDPKTIIKLVDRYGIGTGQRMASFLSTGNITTSTGLDLMQASGFTVVAERINMLRYLSHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGAPCGLLNHMAAECQ--------------------ILVSLGMTPAGIGSGDGSTALPYYYMPVMVDGRVVGGGTHETLQAVSRGLRRLKV----------------------ATPPAVEPTMEVALLPPMKKGSGPFPGLFLFTGASRMIRPVLNIEFCKREWIGPLEQPFMEIACLASEAKGTGATHCEIDPTNMLSLIASLTPFSDYNQSPRNMYQCQMG 705          
BLAST of mRNA_H-paniculata_contig3805.9978.1 vs. uniprot
Match: W7TET2_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TET2_9STRA)

HSP 1 Score: 646 bits (1667), Expect = 1.080e-216
Identity = 337/613 (54.98%), Postives = 427/613 (69.66%), Query Frame = 0
Query:    4 GDTRRLQRRAGDMPVMVGSKRCHLQGHGPAQLCRGREESGEMGGYFIVRGIERVIRLLQVPKRNYAHAITRGTFKDRGTGYSDMGVMMRCGRKDLSTVTVTVHYITTGGCTLRFAVKKQEFMVPVVIVLKALRDTTDREIHERLLQGQMKNTFLAAHVEVLLRDGKRWGLHSRQESLAFLGTTFRTVMQATASTTDAQIGKMVINRYILVHLNRHNDKQECILLMLRKLYAFVQGRCREDKPDALANHELLLPGHLYGMIIKERMESWLEKVRQHITRDARMYPAKARLQVRDDKYVGKLLDRYGLSVGQGMATFLSTGNITSASGLDLMQVSGFTIVAERINFLRYLAHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGSPCGLLNHLATQCRVVTGSGTKPPPPQSPSSLESILVSLGVTPAGTGAGDGSASLPYYLLPVMLNGRVIGGGSVATLARAAAELRRLKVMGGW-----GVGGKEEGGAGTGGGVLAAGAGGVDPTLEVGWLPPMKGGAGPYPGLYLASEGARMCRPVMHLPTGRLEWIGPLEQQFMEIACLADDVRAGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQVQCG 611
            G   R+QR  G++P+MV S RC L G    +L   +EE+ E GGYFIV GIER+IRLLQ+P+RN+A AI+R TFK RGTGYSD GV MRC R D S++TVT+HY+T G  T R  + KQEF+VPVV+VLKALRD TD E++ER+  G   NT+L   VE+LLR+   +   SR ++L++LG+ FRTV+  + + +DA  G+ +++R++ +HL  H DKQEC+L MLRKLYAFVQGRCR D PD+  N ELLLPGHLY + +KE++E  L    Q + ++ R   A+A    +D+ Y  +LL R+G  VG+  A  LSTGN+ S +G+D+MQVSG+TIVAER+NF R+L+HF+SVHRGQFFTTMKTTAVRKLLPES+GFLCPVHTPDGSPCGLLNH+AT  RV+                  +LV LGV+P G G+ DG+  L    LPV+L+GRV+GG  V    R    LRR K +         V G +             G G VD TLEV ++ P++GG  P PGL+L S  ARM RPV+HL TG +E+IGP+EQ FME+A L +DVRAG TTH+ELDPTNMLSLVASLTPFSDYNQSPRNMYQ Q G
Sbjct:  156 GGVMRVQRTLGELPIMVCSSRCRLAGKKAEELVALKEEACECGGYFIVNGIERIIRLLQLPRRNHAMAISRNTFKGRGTGYSDKGVTMRCVRPDQSSITVTLHYLTNGNATFRVTILKQEFLVPVVLVLKALRDLTDEELYERITLGDEDNTYLVTRVEMLLRESHDFATFSRNKALSYLGSRFRTVLGLSNAHSDADCGRALVDRFVCIHLGHHADKQECLLHMLRKLYAFVQGRCRADNPDSFMNQELLLPGHLYSVFVKEKLEETLTAAFQQLRKECREDLARALAATQDEAYWAQLLGRHGAGVGKKAAYLLSTGNLVSRTGMDMMQVSGYTIVAERLNFFRFLSHFQSVHRGQFFTTMKTTAVRKLLPESFGFLCPVHTPDGSPCGLLNHVATAARVLCHEDRLQGGRVRGGLATDLLVGLGVSPGGAGSADGALVLSKDHLPVLLDGRVVGGAPVDICRRVVRALRRFKAVSAPPPNPDAVQGPDA--------QRLRGKGRVDATLEVAFIHPVRGG--PAPGLFLFSGAARMVRPVLHLETGCVEYIGPMEQVFMEVALLPEDVRAGETTHQELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMG 758          
BLAST of mRNA_H-paniculata_contig3805.9978.1 vs. uniprot
Match: B8CA95_THAPS (DNA-directed RNA polymerase subunit beta n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CA95_THAPS)

HSP 1 Score: 603 bits (1556), Expect = 5.150e-202
Identity = 323/624 (51.76%), Postives = 419/624 (67.15%), Query Frame = 0
Query:    8 RLQRRAGDMPVMVGSKRCHLQGHGPAQLCRGREESGEMGGYFIVRGIERVIRLLQVPKRNYAHAITRGTFKDRGTGYSDMGVMMRCGRK--DLSTVTVTVHYITTGGCTLRFAVKKQEFMVPVVIVLKAL---------RDTTDREIHERLLQGQMKNTFLAAHVEVLLRDGKRW-GLHSRQESLAFLGTTFRTVMQATASTTDAQIGKMVINRYILVHLNRHNDKQECILLMLRKLYAFVQGRCREDKPDALANHELLLPGHLYGMIIKERMESWLEKVRQHITRDARMYPAKARLQVRDDKYVGKLLDRYGL----SVGQGMATFLSTGNITSASGLDLMQVSGFTIVAERINFLRYLAHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGSPCGLLNHLATQCRVVT-GSGTKPPPPQSPSSLESILVSLGVTPAGTGA--GDGSASLPYYLLPVMLNGRVIGGGSVATLARAAAELRRLKVMGGWGVGGKEEGGAGTGGGVLAAGAGGVDPTLEVGWLPP-MKGGAGPYPGLYLASEGARMCRPVMHLPTGRLEWIGPLEQQFMEIACLADDVRAGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQVQCG 611
            R+ R  G MP+M  SK CHL G  PA+L + +EE  E GGYFIV GIER +RLLQVP+ N+A +I R  +K+RG  Y+D+GV +RC R   D+ST+T T+HY+TTGG TL+F  +KQEF++P+V+V++AL            TD E++ R++QG   NTF+ A  E+LLR+ K++ G+ + +E LAF+G+ FR +     ST+D +IG  +INRYIL+HL  + DK E  L MLRKLY+F  G C  D  D+L N E+LLPGHL    +KE+ +  L  +R  + ++ RM   K    V   K+  K +DRYG+     +G+ +  FLSTGNI S++GLDLMQVSG+TIVAE++NFLR+ AHFRSVHRGQFF  MKTTAVRKLLP+ WGFLCPVHTPDG PCGLL+H+A +C+ +   +  K    Q    L+ +L+S GVTPAGTG   GDG     +  LPVM+NGRV+GG SV      A +LR LKV        K                  V PTLEV ++PP MKGG  PYPGL+L +  AR+ RPV+   TGR E+IGP+EQ FM+IACL +D+R G+TTH+ELDP NMLSL+ASLTPFSDYNQSPRNMYQ Q G
Sbjct:    2 RISRNFGMMPIMTMSKACHLYGKSPAELVKVKEEQTEFGGYFIVNGIERCVRLLQVPRANHATSIQRSNYKNRGKLYTDLGVAIRCQRHNGDMSTITNTLHYLTTGGATLKFVARKQEFLLPLVLVMRALSGGDGSTRGHGITDEELYNRIVQGDESNTFVRARAELLLREAKQFNGMQTPEECLAFVGSRFRLMSMKANSTSDVEIGHYIINRYILIHLPSYGDKLEYTLFMLRKLYSFAAGDCGVDNADSLQNQEILLPGHLMCTFVKEKFDETLANIRLGLLKEMRMDYTKLLTSVPQVKFWTKCVDRYGMLSSGGIGKKVQHFLSTGNIISSTGLDLMQVSGYTIVAEKLNFLRFCAHFRSVHRGQFFMEMKTTAVRKLLPDQWGFLCPVHTPDGGPCGLLSHMALKCQCMAYPADAKDGEMQD---LDELLISWGVTPAGTGGEGGDGRTISNFTNLPVMVNGRVVGGASVKLCKSIAFQLRSLKVQE------KPT----------------VPPTLEVAYIPPGMKGG--PYPGLFLFTIAARVVRPVLQRATGRTEYIGPMEQPFMDIACLPEDIREGITTHQELDPANMLSLIASLTPFSDYNQSPRNMYQCQMG 598          
BLAST of mRNA_H-paniculata_contig3805.9978.1 vs. uniprot
Match: A0A2D4BW55_PYTIN (DNA-directed RNA polymerase subunit beta n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BW55_PYTIN)

HSP 1 Score: 597 bits (1538), Expect = 5.720e-198
Identity = 318/619 (51.37%), Postives = 424/619 (68.50%), Query Frame = 0
Query:    2 GTGDTRRLQRRAGDMPVMVGSKRCHLQGHGPAQLCRGREESGEMGGYFIVRGIERVIRLLQVPKRNYAHAITRGTFKDRGTGYSDMGVMMRCGRKDLSTVTVTVHYITTGGCTLRFAVKKQEFMVPVVIVLKALRDTTDREIHERLLQGQMKNTFLAAHVEVLLRDGKRWGLHSRQESLAFLGTTFRTVMQATA-STTDAQIGKMVINRYILVHLNRHN----DKQECILLMLRKLYAFVQGRCREDKPDALANHELLLPGHLYGMIIKERMESWLEKVRQHITRDARMYPAKARLQVRDDKYVGKLLDRYGLSVGQGMATFLSTGNITSASGLDLMQVSGFTIVAERINFLRYLAHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGSPCGLLNHLATQCRVVTGSGTKPPPPQSPSSLES------ILVSLGVTPAGTGAGDGSASLPYYLLPVMLNGRVIGGGSVATLARAAAELRRLKVMGGWGVGGKEEGGAGTGGGVLAAGAGGVDPTLEVGWLPPMKGGAGPYPGLYLASEGARMCRPVMHLPTGRLEWIGPLEQQFMEIACLADDVRAGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQVQ 609
            G+ +  RLQR  GD+P+MV SKRCHL G  PA+L + REE+ EMGGYFI  G ER +RLLQ+P+R++  A+ RG F +RG  Y+++ V M+C ++D + VTVT+HY+  G  TLRF V+KQEFM+PV ++LKAL   TDREI+ER+L+G+ +NT+L+A VE++LR+ K++ ++SR E+LA+LG  FR VM     S ++ ++G  +++ Y+ VH+ +       K E + LMLRKLYAF +G  RED  D++ NHELLLPGHLYGMI+KE+++  L   R +I +  +      +  V D  ++ ++ +R   ++G  M  FL+TGN+ S+SGLDL+QV+G+TIVAE++N+ RY +HFRSVHRGQFFT MKTTAVRKLLP+SWGFLCPVHTPDGSPCGLLNHLA +C++VT      PP Q+   L+        L SLG+ P  +G  DG+  +PY+ LPVMLNG+V+GG  V +  R A  LR +K           E  A            GV   LEV  + P  GG   +PGLYLAS+ ARM RPV  + T R+EWIGP+EQ FM+IAC   D+R   TTH E+ PTNMLSLVASLTPFSDYNQSPRNMYQ Q
Sbjct:  134 GSSNVERLQRVVGDIPIMVRSKRCHLNGLSPAELVQAREEANEMGGYFICNGNERCVRLLQMPRRHHIMAVRRGAFANRGALYTELAVFMKCVKRDQTAVTVTMHYLEDGNATLRFGVRKQEFMIPVGLMLKALYPLTDREIYERVLRGEHENTYLSARVELILREAKKFSIYSRDEALAYLGKHFRHVMPYIYDSMSNVEVGSKMLDDYLFVHIPKGEKGRAQKVELVCLMLRKLYAFAKGDIREDNSDSVMNHELLLPGHLYGMILKEKLQEMLAATRSNILKAVQ---TSKKAVVMDQAFMRQMWERTA-NIGNAMTYFLNTGNLRSSSGLDLLQVAGYTIVAEKLNYYRYFSHFRSVHRGQFFTEMKTTAVRKLLPDSWGFLCPVHTPDGSPCGLLNHLAVECQLVTH-----PPHQADDYLQQELKLARFLTSLGMIPT-SGYADGALVVPYHYLPVMLNGKVLGGAPVESCKRIAETLRLVK---------SAESPA-------ERQEHGVVENLEVCLILPSLGGC--FPGLYLASDAARMTRPVKQMDTERIEWIGPMEQVFMDIACTQSDIRPA-TTHMEIKPTNMLSLVASLTPFSDYNQSPRNMYQCQ 723          
BLAST of mRNA_H-paniculata_contig3805.9978.1 vs. uniprot
Match: A0A5D6YCW8_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YCW8_9STRA)

HSP 1 Score: 596 bits (1537), Expect = 7.660e-198
Identity = 320/614 (52.12%), Postives = 420/614 (68.40%), Query Frame = 0
Query:    2 GTGDTRRLQRRAGDMPVMVGSKRCHLQGHGPAQLCRGREESGEMGGYFIVRGIERVIRLLQVPKRNYAHAITRGTFKDRGTGYSDMGVMMRCGRKDLSTVTVTVHYITTGGCTLRFAVKKQEFMVPVVIVLKALRDTTDREIHERLLQGQMKNTFLAAHVEVLLRDGKRWGLHSRQESLAFLGTTFRTVM-QATASTTDAQIGKMVINRYILVHLNRHN----DKQECILLMLRKLYAFVQGRCREDKPDALANHELLLPGHLYGMIIKERMESWLEKVRQHITRDARMYPAKARLQVRDDKYVGKLLDRYGLSVGQGMATFLSTGNITSASGLDLMQVSGFTIVAERINFLRYLAHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGSPCGLLNHLATQCRVVTGSGTKPPPPQSPS-SLESILVSLGVTPAGTGAGDGSASLPYYLLPVMLNGRVIGGGSVATLARAAAELRRLKVMGGWGVGGKEEGGAGTGGGVLAAGAGGVDPTLEVGWLPPMKGGAGPYPGLYLASEGARMCRPVMHLPTGRLEWIGPLEQQFMEIACLADDVRAGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQVQ 609
            G+    R+QR  GD+P+MV SKRCHL G  P +L + REE+ EMGGYFI  G ER +RLLQ+P+R++  A+ RG F +RG  Y+++ V M+C R+D S VTVT HY+  G  T+RF VKKQEFM+PV +VLKAL   +DREI+ER+L+G+ +NT+LAA VE++LR+ K++ L+SR E+LA+LG  FR VM     +T++  +G  +++ ++ VH+ +       K E + LMLRKLYAF +G  RED  D++ NHELLLPGHLY MI+KE+++  L  +R +I +DA    +  R  V D  ++ K+ DR   ++GQ M  FL+TGN+ S+SGLDLMQV+G+TIVAE++N+ RY +HFRSVHRGQFFT MKTTAVRKLLP+SWGFLCPVHTPDGSPCGLLNHLA +C +V+          +    +   L +LG+ P  +G  DG+  +PY  LPVMLNG+V+GG   A  AR  A LR+LK                +        A GV   +EV  + P  GG   YPGLYL+++ ARM RPV  L T R+E+IGP+EQ FM+IA  ADDVR   TTH E+ PTNMLSLVASLTPFSDYNQSPRNMYQ Q
Sbjct:  130 GSAAVERIQRVVGDIPIMVRSKRCHLSGLSPPELVKRREEANEMGGYFICNGNERCVRLLQLPRRHHIMAVRRGAFANRGDLYTELAVFMKCVRRDQSAVTVTCHYLEDGNATVRFGVKKQEFMIPVGLVLKALYPLSDREIYERVLRGEHENTYLAARVELILREAKKFSLYSRDEALAYLGKHFRHVMPNVYEATSNVDVGSRMLDEFLFVHVPKGEKGRAQKVELLCLMLRKLYAFAKGDAREDNADSVMNHELLLPGHLYLMILKEKLQEQLAALRLNILKDATGTGSAKRTVVLDQVFLRKMWDRTP-NIGQAMTYFLNTGNLRSSSGLDLMQVAGYTIVAEKLNYYRYFSHFRSVHRGQFFTEMKTTAVRKLLPDSWGFLCPVHTPDGSPCGLLNHLAVECELVSHPAHAADDFLAHELKVARFLATLGMIPT-SGYADGALVVPYSYLPVMLNGKVLGGAPAAVCARLEAALRQLK----------------SADDAAERAAHGVVANMEVCLILPTLGGV--YPGLYLSTDAARMSRPVRQLDTQRVEYIGPMEQVFMDIAVTADDVRPA-TTHMEIKPTNMLSLVASLTPFSDYNQSPRNMYQCQ 722          
BLAST of mRNA_H-paniculata_contig3805.9978.1 vs. uniprot
Match: A0A7S3V7B4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7B4_9STRA)

HSP 1 Score: 593 bits (1529), Expect = 6.030e-196
Identity = 313/624 (50.16%), Postives = 419/624 (67.15%), Query Frame = 0
Query:    8 RLQRRAGDMPVMVGSKRCHLQGHGPAQLCRGREESGEMGGYFIVRGIERVIRLLQVPKRNYAHAITRGTFKDRGTGYSDMGVMMRCGR--KDLSTVTVTVHYITTGGCTLRFAVKKQEFMVPVVIVLKALRDT-------TDREIHERLLQGQMKNTFLAAHVEVLLRDGKRW-GLHSRQESLAFLGTTFRTVMQATASTTDAQIGKMVINRYILVHLNRHNDKQECILLMLRKLYAFVQGRCREDKPDALANHELLLPGHLYGMIIKERMESWLEKVRQHITRDARMYPAKARLQVRDDKYVGKLLDRYGLSVGQGMAT----FLSTGNITSASGLDLMQVSGFTIVAERINFLRYLAHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGSPCGLLNHLATQCRVVTGSGTKPPPPQSPSSLESI---LVSLGVTPAGTG--AGDGSASLPYYLLPVMLNGRVIGGGSVATLARAAAELRRLKVMGGWGVGGKEEGGAGTGGGVLAAGAGGVDPTLEVGWLPP-MKGGAGPYPGLYLASEGARMCRPVMHLPTGRLEWIGPLEQQFMEIACLADDVRAGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQVQCG 611
            R+ ++ GDMP+MV SK CHL G  P QL + +EE  E GGYFIV GIER +RLLQ+P+RN+  AI R  +K RG  Y+D+GV +RC R  +D +++T TVHY+TTGG +L+F  +KQEF++P++++L+AL  T       +D E++ R+LQG  +NTFL A  E+LL+D +R+ GL +  E + F+G+ FR +     S+TD  IG  +I ++IL+H+  + DK EC+LL++RKLY+F  G C  D  D+L N E+L+PGHL    +KE+ E     +R  + ++ R   +K    ++D     K++DRYG   G G+      FLSTGNI S+SGLDLMQVSG+TIVAER+NFLRY AHFRSVHRGQFF  MKTTAVRKLLP+ WGFLCPVHTPDG PCGLL+H+A +   +T      P P S  +L+S+   L+ LG +P+G G  +GDG     +  +P+ L+GRVIGG S       AA+LR++KV         E+                V PTLEV  +P  +KGG  PYPGL+L +  AR+ RPV+H  +G+ E IGP+EQ FM+IACLA+DVR G+TTH+ELDP NMLSL+ASLTPFSDYNQSPRNMYQ Q G
Sbjct:  162 RIPKKFGDMPIMVMSKACHLHGKNPEQLIQMKEEQNEFGGYFIVNGIERCVRLLQIPRRNHPTAIQRSNYKSRGPTYTDLGVAIRCARHNEDQTSITNTVHYLTTGGASLKFTARKQEFLIPIILILRALSGTKYGLGGVSDEELYNRILQGDEENTFLKARAELLLQDSQRFQGLSTPNECVEFIGSRFRMLSMKADSSTDEDIGHYIIKKFILIHIPEYGDKLECLLLLIRKLYSFAAGDCGVDNADSLQNQEILMPGHLVCSFVKEKFEEMFMAIRIGMLKEMRQDFSKILGNIQDTSTFSKIVDRYGNLAGGGIGKKVQHFLSTGNIISSSGLDLMQVSGYTIVAERLNFLRYCAHFRSVHRGQFFLEMKTTAVRKLLPDQWGFLCPVHTPDGGPCGLLSHMALKSIPMTY-----PAPLSGDNLQSLDDLLIKLGASPSGAGGISGDGRGPSIHTHVPICLDGRVIGGASAKRCKSIAAQLRQMKV---------EDNAT-------------VPPTLEVALIPKGVKGG--PYPGLFLFTGAARLVRPVLHRASGKEEMIGPMEQPFMDIACLAEDVREGITTHQELDPMNMLSLIASLTPFSDYNQSPRNMYQCQMG 756          
BLAST of mRNA_H-paniculata_contig3805.9978.1 vs. uniprot
Match: A0A8K1FE15_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FE15_PYTOL)

HSP 1 Score: 590 bits (1522), Expect = 1.550e-195
Identity = 316/620 (50.97%), Postives = 421/620 (67.90%), Query Frame = 0
Query:    1 VGTGDTRRLQRRAGDMPVMVGSKRCHLQGHGPAQLCRGREESGEMGGYFIVRGIERVIRLLQVPKRNYAHAITRGTFKDRGTGYSDMGVMMRCGRKDLSTVTVTVHYITTGGCTLRFAVKKQEFMVPVVIVLKALRDTTDREIHERLLQGQMKNTFLAAHVEVLLRDGKRWGLHSRQESLAFLGTTFRTVMQAT-ASTTDAQIGKMVINRYILVHLNR----HNDKQECILLMLRKLYAFVQGRCREDKPDALANHELLLPGHLYGMIIKERMESWLEKVRQHITRDARMYPAKARLQVRDDKYVGKLLDRYGLSVGQGMATFLSTGNITSASGLDLMQVSGFTIVAERINFLRYLAHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGSPCGLLNHLATQCRVVTGSGTKPPPP-QSPSSLESILVSLGVTPAGTGAGDGSASLPYYLLPVMLNGRVIGGGSVATLARAAAELRRLKVMGGWGVGGKEEGGAGTGGGVLAAGAG-----GVDPTLEVGWLPPMKGGAGPYPGLYLASEGARMCRPVMHLPTGRLEWIGPLEQQFMEIACLADDVRAGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQVQ 609
            VG+ +  R+QR  GD+P+MV SKRCHL G  P +L + REE+ EMGGYFI  G ER +RLLQ+P+R++  A+ RG F +RG  Y+++ V M+C ++D S VTVT+HY+  G  TLRF V+KQEFM+PV +VLKAL   TDREI+ER+L+G+ +NT+L+A  E++LR+ K++ ++SR E+LA+LG  FR VM     S ++ ++G  +++ Y+ VH+ +       K E I LMLRKLYAF +G  RED  D++ NHELLLPGHLY MI+KE+++  L  VR +I +D  M  +K R  V D  ++ K+ DR   ++GQ M  FL+TGN+ S+SGLDL+Q++G+TIVAE++N+ RY +H+RSVHRGQFFT MKTTAVRKLLP+SWGFLCPVHTPDGSPCGLLNHLA +C++V+          Q    L   L SLG+ P  +G  DG+  +PY+ LP+MLNG+V+GG       R A  LR +K                      A  A      GV   LEV  + P  GG   +PGLYL+++ ARM RPV  + T R+E+IGP+EQ FM+IAC   D+R   TTH E+ PTNMLSLVASLTPFSDYNQSPRNMYQ Q
Sbjct:  138 VGSNNVERIQRVVGDIPIMVRSKRCHLYGLSPPELVQAREEANEMGGYFICNGNERCVRLLQMPRRHHIMAVRRGAFANRGALYTELAVFMKCVKRDQSAVTVTMHYLEDGNATLRFGVRKQEFMIPVGLVLKALYPLTDREIYERVLRGEHENTYLSARAELILREAKKFSIYSRDEALAYLGKHFRHVMPYVYESMSNVEVGSKMLDDYLFVHIPKGEKGRTQKVELICLMLRKLYAFAKGDIREDNSDSVMNHELLLPGHLYNMILKEKLQDQLAMVRANIVKD--MQTSK-RAVVMDQVFIRKMWDRT-TNIGQAMLYFLNTGNLRSSSGLDLLQIAGYTIVAEKLNYYRYFSHYRSVHRGQFFTEMKTTAVRKLLPDSWGFLCPVHTPDGSPCGLLNHLAVECQLVSYPAHNADDYLQEELKLARFLTSLGMIPT-SGYTDGALVVPYHYLPIMLNGKVLGGAPAEVCKRIAEVLRHVK---------------------SAESADERKEHGVVQNLEVCLIVPTLGGC--FPGLYLSADAARMTRPVKQMDTQRIEYIGPMEQVFMDIACTKADIRPA-TTHMEIKPTNMLSLVASLTPFSDYNQSPRNMYQCQ 728          
BLAST of mRNA_H-paniculata_contig3805.9978.1 vs. uniprot
Match: A0A7S2V994_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V994_9STRA)

HSP 1 Score: 590 bits (1521), Expect = 9.830e-195
Identity = 320/634 (50.47%), Postives = 409/634 (64.51%), Query Frame = 0
Query:    8 RLQRRAGDMPVMVGSKRCHLQGHGPAQLCRGREESGEMGGYFIVRGIERVIRLLQVPKRNYAHAITRGTFKDRGTGYSDMGVMMRCGRK--DLSTVTVTVHYITTGGCTLRFAVKKQEFMVPVVIVLKALRDT----------------------TDREIHERLLQGQMKNTFLAAHVEVLLRDGKR--WGLHSRQESLAFLGTTFRTVMQATASTTDAQIGKMVINRYILVHLNRHNDKQECILLMLRKLYAFVQGRCREDKPDALANHELLLPGHLYGMIIKERMESWLEKVRQHITRDARMYPAKARLQVRDDKYVGKLLDRYGLS----VGQGMATFLSTGNITSASGLDLMQVSGFTIVAERINFLRYLAHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGSPCGLLNHLATQCRVVTGSGTKPPPPQSPSSLESILVSLGVTPAGTGAGDGSASLPYYLLPVMLNGRVIGGGSVATLARAAAELRRLKVMGGWGVGGKEEGGAGTGGGVLAAGAGGVDPTLEVGWLPPMKGGAGPYPGLYLASEGARMCRPVMHLPTGRLEWIGPLEQQFMEIACLADDVRAGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQVQCG 611
            R+ +  GD+P+MV SK CHL      +L    EE  EMGGYFIV GIER +R+LQVP+RN A AI R  +K+RG  YSD+GV MRC R   D STVT TVHY+TTGG TL+F  KKQEF++PVV++++AL                         TD E++ R++QG  KNTFL A    LL+D +     L++ QE LA++G  FR + Q   +++D ++G  ++  YILVHL ++ DK EC+L MLRKLYAF  G C  D  D+L N E+LLPGHL  M +KE+ E  L  +RQ IT D R   +KA   ++  +Y  K++DR+       +G+ +A FLSTGN+ S++GLDL+QVSG+TIVAER+NFLRY +HFRSVHRGQFF  MKTTAVRKLLP+ WGFLCPVHTPDG PCGLL+HL+ +  V+            P  LE +L+SLGVT AG GA  G     + LLPV ++GR+IGG S     R A  LR LKV        K                  V  T+EV ++PP   G+ P+PGLYL +  ARM RPV+   TG+ E+IGPLEQ FM+IACL +D+R G+TTH+ELDPTNMLSL+A+LTPFSD NQSPRNMYQ Q G
Sbjct:  176 RMPKEFGDLPIMVMSKACHLANTTAKELAAKNEEQNEMGGYFIVNGIERCVRMLQVPRRNLATAIQRSNYKNRGNIYSDLGVAMRCARYTGDQSTVTNTVHYLTTGGSTLKFVAKKQEFLIPVVLLIRALSGLASNPSDDSNDMNTETSGFGTGITDEEMYNRIVQGDEKNTFLVARAGSLLQDARSRYQNLNTPQECLAYVGARFRRLAQRAETSSDVEVGHFMVREYILVHLEKYGDKLECLLFMLRKLYAFAAGDCGVDNADSLQNQEILLPGHLISMFLKEKFEEVLSSIRQAITIDMRRSFSKASTNLQKVEYWSKMVDRFSQKSSGGIGKKVAHFLSTGNVISSTGLDLLQVSGYTIVAERLNFLRYCSHFRSVHRGQFFMEMKTTAVRKLLPDQWGFLCPVHTPDGGPCGLLSHLSLKGSVLAYEAKAEREDAPP--LEDLLLSLGVTRAGAGAPGGRTVSSHSLLPVCIDGRIIGGASSVDCKRIAVCLRELKVET------KPR----------------VPATMEVAFIPPGNKGS-PFPGLYLFTLSARMVRPVLQRATGKTEYIGPLEQGFMDIACLDEDIREGVTTHQELDPTNMLSLIANLTPFSDQNQSPRNMYQCQMG 784          
BLAST of mRNA_H-paniculata_contig3805.9978.1 vs. uniprot
Match: A0A7S4JAV2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JAV2_9STRA)

HSP 1 Score: 591 bits (1523), Expect = 1.510e-194
Identity = 315/633 (49.76%), Postives = 412/633 (65.09%), Query Frame = 0
Query:    4 GDTRRLQRRAGDMPVMVGSKRCHLQGHGPAQLCRGREESGEMGGYFIVRGIERVIRLLQVPKRNYAHAITRGTFKDRGTGYSDMGVMMRCGRK--DLSTVTVTVHYITTGGCTLRFAVKKQEFMVPVVIVLKALRD-------------TTDREIHERLLQGQMKNTFLAAHVEVLLRDGKRWG-LHSRQESLAFLGTTFRTVMQATASTTDAQIGKMVINRYILVHLNRHNDKQECILLMLRKLYAFVQGRCREDKPDALANHELLLPGHLYGMIIKERMESWLEKVRQHITRDARMYPAKARLQVRDDKYVGKLLDRYG------LSVGQGMATFLSTGNITSASGLDLMQVSGFTIVAERINFLRYLAHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGSPCGLLNHLATQCRVVT-GSGTKPPPPQSPSSLESILVSLGVTPAGTGA--GDGSASLPYYLLPVMLNGRVIGGGSVATLARAAAELRRLKVMGGWGVGGKEEGGAGTGGGVLAAGAGGVDPTLEVGWLPPMKGGAGPYPGLYLASEGARMCRPVMHLPTGRLEWIGPLEQQFMEIACLADDVRAGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQVQCG 611
            G   R  +R GDMP+M  S+ CHL+G  P +L R +EE  E GGYFIV GIER +R+LQ+P+RN+  AI RG++K RG  Y+D+GV +R  R   D S++T TVHY+TTGG +LRF  +KQEF++PVV++L+AL                TD E++ R+++G   NTFL A  E+LL+D +R+  L    E LA+LG  FR +     ST+D  +G+ +I+R++L+HL  H+DK E +LL+LRKLY+F  G C  D  D+  N E+LLPGHL    +KE+ E  L+ VR  + ++ R+  A+A   V+D ++  +++DRY        S+G+ +  FLSTGNI S++GLDLMQVSG+TI+AER+NFLRY AHFRSVHRGQFF  M+TTAVRKLLP+ WGFLCPVHTPDG PCGLL+HLA +C V++  + T     Q    L+ +L+ +GVTP GTG   GDG  +     LPV L+GRV+GG         A  LR LKV     +                     V PTLEV  +P       PYPGLYL +  AR+ RPV+H  TGR E IGP+EQ FM+IACL +DVR G+TTH ELDP NMLSL+ASLTPFSDYNQSPRNMYQ Q G
Sbjct:  170 GKVSRCNKRFGDMPIMTMSRACHLRGKSPEKLVRMKEEHNEFGGYFIVNGIERCVRILQIPRRNHPTAIQRGSYKKRGPTYTDLGVAVRSARHCGDCSSITNTVHYLTTGGASLRFPARKQEFLIPVVLLLRALSGXXXXXXXXXXXXXVTDEELYRRIVRGDSTNTFLRARAELLLQDARRFSDLADPSECLAYLGARFRMLSGRADSTSDVDVGRYMIDRFVLIHLPNHSDKLEYLLLLLRKLYSFAAGECGVDNADSFQNQEILLPGHLICHYVKEKFEESLQSVRLGLLKEMRVDFARAYSSVKDSRWWSRMVDRYAGIGGNASSIGKKVQHFLSTGNIVSSTGLDLMQVSGYTIIAERLNFLRYCAHFRSVHRGQFFMEMRTTAVRKLLPDQWGFLCPVHTPDGGPCGLLSHLALKCEVMSYPAETMGGKLQD---LDELLIGMGVTPCGTGGAGGDGRGTPDRGHLPVCLDGRVVGGAPARLCKSIAIHLRELKVAEPEPI---------------------VPPTLEVAHIPSTGSDGEPYPGLYLFTGSARVVRPVLHRRTGRTERIGPMEQPFMDIACLREDVREGITTHMELDPNNMLSLIASLTPFSDYNQSPRNMYQCQMG 778          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3805.9978.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGZ7_ECTSI4.520e-28269.39DNA-directed RNA polymerase (Fragment) n=1 Tax=Ect... [more]
A0A835YVF9_9STRA1.250e-21854.55DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
W7TET2_9STRA1.080e-21654.98DNA-directed RNA polymerase subunit beta n=2 Tax=M... [more]
B8CA95_THAPS5.150e-20251.76DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A2D4BW55_PYTIN5.720e-19851.37DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A5D6YCW8_9STRA7.660e-19852.12DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A7S3V7B4_9STRA6.030e-19650.16DNA-directed RNA polymerase subunit beta n=1 Tax=C... [more]
A0A8K1FE15_PYTOL1.550e-19550.97Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2V994_9STRA9.830e-19550.47DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]
A0A7S4JAV2_9STRA1.510e-19449.76DNA-directed RNA polymerase subunit beta n=1 Tax=O... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009674DNA-directed RNA polymerase I subunit RPA2, domain 4PFAMPF06883RNA_pol_Rpa2_4coord: 460..540
e-value: 4.2E-13
score: 49.1
IPR007645RNA polymerase Rpb2, domain 3PFAMPF04565RNA_pol_Rpb2_3coord: 341..405
e-value: 8.6E-30
score: 102.7
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 9..282
e-value: 2.8E-17
score: 63.4
IPR037034RNA polymerase Rpb2, domain 2 superfamilyGENE3D3.90.1110.10coord: 67..240
e-value: 7.6E-63
score: 213.4
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 588..611
e-value: 6.0E-6
score: 27.9
NoneNo IPR availableGENE3D3.90.1100.10coord: 241..427
e-value: 1.2E-12
score: 49.5
NoneNo IPR availablePANTHERPTHR20856:SF5DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2coord: 11..609
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 7..609
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 97..253
e-value: 1.0E-15
score: 57.9
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 11..609

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3805contigH-paniculata_contig3805:809..14914 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3805.9978.1mRNA_H-paniculata_contig3805.9978.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig3805 809..14914 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig3805.9978.1 ID=prot_H-paniculata_contig3805.9978.1|Name=mRNA_H-paniculata_contig3805.9978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=611bp
VGTGDTRRLQRRAGDMPVMVGSKRCHLQGHGPAQLCRGREESGEMGGYFI
VRGIERVIRLLQVPKRNYAHAITRGTFKDRGTGYSDMGVMMRCGRKDLST
VTVTVHYITTGGCTLRFAVKKQEFMVPVVIVLKALRDTTDREIHERLLQG
QMKNTFLAAHVEVLLRDGKRWGLHSRQESLAFLGTTFRTVMQATASTTDA
QIGKMVINRYILVHLNRHNDKQECILLMLRKLYAFVQGRCREDKPDALAN
HELLLPGHLYGMIIKERMESWLEKVRQHITRDARMYPAKARLQVRDDKYV
GKLLDRYGLSVGQGMATFLSTGNITSASGLDLMQVSGFTIVAERINFLRY
LAHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPDGSPCGLLNHLA
TQCRVVTGSGTKPPPPQSPSSLESILVSLGVTPAGTGAGDGSASLPYYLL
PVMLNGRVIGGGSVATLARAAAELRRLKVMGGWGVGGKEEGGAGTGGGVL
AAGAGGVDPTLEVGWLPPMKGGAGPYPGLYLASEGARMCRPVMHLPTGRL
EWIGPLEQQFMEIACLADDVRAGLTTHRELDPTNMLSLVASLTPFSDYNQ
SPRNMYQVQCG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009674Rpa2_dom_4
IPR007645RNA_pol_Rpb2_3
IPR007644RNA_pol_bsu_protrusion
IPR037034RNA_pol_Rpb2_2_sf
IPR037033DNA-dir_RNAP_su2_hyb_sf
IPR007642RNA_pol_Rpb2_2
IPR015712DNA-dir_RNA_pol_su2