mRNA_H-paniculata_contig38.9963.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig38.9963.1
Unique NamemRNA_H-paniculata_contig38.9963.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig38.9963.1 vs. uniprot
Match: D7FNK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK4_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 8.060e-93
Identity = 202/438 (46.12%), Postives = 262/438 (59.82%), Query Frame = 1 
Query:    1 IALEMASLYLVLSDPTSALKNFQIALKPSPGEFGVLTQQEKDKEEVQNRKLMLLDETGRAQALTVLRAEEVERKREQAQSEAARRKKAATGIYQCLLEMKEPVAAAQAARVRLRMCNGEAADDERIQVRKEIHETLLRFQGLIESEATNQGAWLTESAGVLIDLHTSVLQSLCGKASHASPCCQPSQSDITRARSITMDA--DAETNS----IRLDR---------------ADGQKERCLSAGGSAVLESTLSQRDNETVGMDVNRGES---------------LERGRTTDNEQGR-----RLRDLGRMLAYKRQFAASRKAFEDALQGGPEEEYLRERRRCHTKGSYFDMALSEASTVMQLGIVSRWQGGVGADETRRRNLFDHTGFTGVHHGAETLVTSMPPTGWATG----MSDLQYADRLSRAKTVVQPLQE 1179
            +A E+A LYLVLSD   ALK+FQ+A KPSP    V T++E DK E+Q R+LMLL++  RA+AL  L A++ ER+RE+  +E ARR+KAATG+Y+CLLEMK+PV AA+AAR RL MC      +ER QV  EIHETLL++ GLIE EATNQGAWLTESAG L DLH  VL+SL G + H      PS    T +    M+A  D E  S    + ++                ADG +   L  GG + L    +       G   +RG +               +   R  + E+ R     RL+DLG +L  KRQF ASR+AF+DA +GGP+E  LRER +  T G + D AL EAS  ++L + SRWQGGV  D+ RRR L + TGFTG+H GAETLV  +P  GWA G     S++ YA+RLSR++  V  LQ+
Sbjct:   20 VAAELALLYLVLSDQRGALKSFQLAAKPSPER--VPTKEETDKREMQERRLMLLNKDRRAEALAQLEAQDAEREREREATEHARRRKAATGVYRCLLEMKQPVQAAEAARARLDMCE---TREERQQVETEIHETLLKYDGLIEPEATNQGAWLTESAGALSDLHADVLRSLTGFSMHEKS-ASPSSCWGTSSSGGAMEAVDDPEEGSCAPGMEINHRGGGVETTGRAVGVSADGYRGNNLLEGGDSTLTKEGAFSATVCEGAGSSRGYTCGGNGPRDVAATTAEVAPDRMNNAEEERDVRRSRLQDLGHLLVRKRQFTASRQAFDDARRGGPDEASLRERNKGRTPGFFIDGALEEASPKIRLELDSRWQGGVETDDIRRRALANFTGFTGLHRGAETLVAVVPAAGWADGGNAIASEIAYAERLSRSRIQVDSLQQ 451
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig38.9963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNK4_ECTSI8.060e-9346.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig38contigH-paniculata_contig38:40601..42960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_005120.1
Exons5
Model size1179
Cds size1167
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig38.9963.1prot_H-paniculata_contig38.9963.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig38 40613..42960 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930167.4278274-UTR-H-paniculata_contig38:40600..406121622930167.4278274-UTR-H-paniculata_contig38:40600..40612Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38 40601..40612 +
1691481174.3316257-UTR-H-paniculata_contig38:40600..406121691481174.3316257-UTR-H-paniculata_contig38:40600..40612Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig38 40601..40612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930167.4428012-CDS-H-paniculata_contig38:40612..406991622930167.4428012-CDS-H-paniculata_contig38:40612..40699Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38 40613..40699 +
1691481174.344421-CDS-H-paniculata_contig38:40612..406991691481174.344421-CDS-H-paniculata_contig38:40612..40699Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38 40613..40699 +
1622930167.4650023-CDS-H-paniculata_contig38:40915..411971622930167.4650023-CDS-H-paniculata_contig38:40915..41197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38 40916..41197 +
1691481174.352967-CDS-H-paniculata_contig38:40915..411971691481174.352967-CDS-H-paniculata_contig38:40915..41197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38 40916..41197 +
1622930167.4772034-CDS-H-paniculata_contig38:41479..419441622930167.4772034-CDS-H-paniculata_contig38:41479..41944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38 41480..41944 +
1691481174.3621807-CDS-H-paniculata_contig38:41479..419441691481174.3621807-CDS-H-paniculata_contig38:41479..41944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38 41480..41944 +
1622930167.4897223-CDS-H-paniculata_contig38:42277..424141622930167.4897223-CDS-H-paniculata_contig38:42277..42414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38 42278..42414 +
1691481174.3748605-CDS-H-paniculata_contig38:42277..424141691481174.3748605-CDS-H-paniculata_contig38:42277..42414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38 42278..42414 +
1622930167.5048823-CDS-H-paniculata_contig38:42764..429601622930167.5048823-CDS-H-paniculata_contig38:42764..42960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38 42765..42960 +
1691481174.3855693-CDS-H-paniculata_contig38:42764..429601691481174.3855693-CDS-H-paniculata_contig38:42764..42960Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig38 42765..42960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig38.9963.1

>prot_H-paniculata_contig38.9963.1 ID=prot_H-paniculata_contig38.9963.1|Name=mRNA_H-paniculata_contig38.9963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=389bp
MASLYLVLSDPTSALKNFQIALKPSPGEFGVLTQQEKDKEEVQNRKLMLL
DETGRAQALTVLRAEEVERKREQAQSEAARRKKAATGIYQCLLEMKEPVA
AAQAARVRLRMCNGEAADDERIQVRKEIHETLLRFQGLIESEATNQGAWL
TESAGVLIDLHTSVLQSLCGKASHASPCCQPSQSDITRARSITMDADAET
NSIRLDRADGQKERCLSAGGSAVLESTLSQRDNETVGMDVNRGESLERGR
TTDNEQGRRLRDLGRMLAYKRQFAASRKAFEDALQGGPEEEYLRERRRCH
TKGSYFDMALSEASTVMQLGIVSRWQGGVGADETRRRNLFDHTGFTGVHH
GAETLVTSMPPTGWATGMSDLQYADRLSRAKTVVQPLQE
back to top

mRNA from alignment at H-paniculata_contig38:40601..42960+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig38.9963.1 ID=mRNA_H-paniculata_contig38.9963.1|Name=mRNA_H-paniculata_contig38.9963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2360bp|location=Sequence derived from alignment at H-paniculata_contig38:40601..42960+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGCATTGGAGATGGCCTCGCTGTACCTGGTGCTGTCCGATCCCACGAG
TGCGCTCAAGAACTTTCAGATCGCTCTAAAGCCCTCACCAGGCGAGTTCG
TCCCCTCGCTGTGTCGCACCTCGTACTACCACAAAAGGAAATGGACTGCA
AGACGAAGTGCCACCTCTAAACAGTGTTTTACATACAGGTCTAGTATTTT
GCTGAGCATCGCACAGTCCCTTCGGTTTCTATGCGTCGTTCGGCAGTCAA
ATGCATCGCCGCAAAAACTGAGACCATCGCGATAATCCCCTTGATGCTAT
ACTCTAAACTCAGAGGGTGTCCTAACTCAACAAGAGAAAGATAAGGAGGA
GGTCCAAAACCGAAAGCTGATGTTACTAGATGAGACAGGTCGAGCTCAAG
CTTTAACTGTTTTGCGCGCTGAGGAGGTTGAGCGTAAGCGTGAGCAAGCC
CAATCGGAGGCCGCGAGGAGGAAAAAAGCTGCGACGGGAATATACCAATG
CCTCCTGGAAATGAAAGAGCCTGTGGCGGCTGCTCAGGCTGCGAGGGTCC
GACTTCGCATGTGCAACGGGGAGGCGGCCGACGACGAACGTATACAGGTT
AGTGTCACGACTAGTTGTACCTCCTCTCTCTTTACAGGAGATTTTGGACA
GCACCCCATCAGAGTTGCATATTTCGGTCATAAGCACACATCCTGATTAT
TGTTTACTGCGAAATATGTGTTTGGGTCAAACTCAACCCAATCGATTCGC
TGTGGGAACTCGTATTCCTTTGCTCCAGCGTTTTGTGATGATGTCAAGCG
AAGCTTGGGCAGTGTTTATTGTCTTACCAGACCATCTGCCTCTATGATCG
CCGCGATCACAACAATAATACAAGTCAAGGTGAGGAAGGAGATCCATGAA
ACGCTACTCCGGTTCCAAGGGCTCATCGAATCTGAAGCCACAAACCAAGG
CGCGTGGCTCACGGAATCTGCTGGAGTATTGATCGACCTACACACCTCTG
TTCTGCAAAGCCTCTGCGGAAAAGCATCGCACGCATCGCCGTGTTGCCAG
CCGTCACAGAGCGATATAACCCGTGCGCGGTCGATAACGATGGACGCTGA
TGCAGAAACTAACAGCATCCGGTTAGACAGAGCAGATGGCCAGAAAGAAA
GATGCCTTAGTGCTGGAGGCTCGGCGGTGTTGGAGAGTACGCTAAGCCAA
CGAGATAACGAAACCGTAGGTATGGATGTTAATAGAGGTGAGAGTTTGGA
GCGGGGAAGAACTACGGATAACGAACAAGGCAGGAGACTTCGTGATTTGG
GTCGGATGCTGGCATACAAGCGTCAATTTGCCGCCAGCCGAAAGGTACGA
TGTGCGGATGATACTGATTCGACATTGATACGCGGGGCTTGGGTTGTGAT
CAGAGAATGTTTCATTTTGCGCAACTAACTGAGACTTTTTTCCCTCGGTT
GTGGGGATTGTGATTCCAGATAGGCGTCTGCCGGTTGGTGACAGTCGCCG
GGTCTTCTTTCACCATCACGCCATCGCTAATACCAATGGTCACGCTTTGT
TCTCGATGTTACTGTAGGTTTCCCCATGCTACAGAAATACGTGGTAGTCT
CAACACCTTGCAAGGCGGCGGATTCCTGAATATCAAGATTCACTTGTAGC
TTGCTGTTGTTCTTTATCCTGCTTAAGGCCTTCGAAGACGCACTCCAAGG
TGGGCCGGAGGAGGAGTACTTGCGAGAGAGACGCAGATGCCATACCAAAG
GATCCTACTTTGACATGGCGCTAAGCGAAGCATCAACAGTCATGCAGCTT
GGTATCGTGTCAAGGTGATCATCTTCGAGAAAAAAAAAACACGCCACGCA
CCGAGACCGGAAATAGAAACTTGGCGATCCATTTTCTGTTTTATCACATC
GATCGATTGACGGCACTAGGGCAGTCGCCACATGTTTACATGTGTGCGAT
AATTCTAGTGGAAAAGTGAATCCATGAGTTTCCCTGCTCAAGCTAGGGAC
CGTCACTCATGCCCAACGCTAACCCCACAAGCGCAAAACAAAAACGCGCG
ACTACATCGATAGCGCGGCAAACAAACAACTCACTGCCCCACCCCCACAC
ATTCTATATGTACGCCCAATCGACCGTACGATCACCACGTGACCTCTCTG
TCGTCAATCGACAGGTGGCAAGGTGGTGTCGGAGCCGACGAAACCCGCCG
CCGCAATCTGTTTGATCATACGGGCTTCACTGGCGTTCACCACGGCGCGG
AGACTCTTGTGACCTCTATGCCACCGACAGGATGGGCGACGGGGATGTCG
GATCTTCAGTATGCGGATCGATTGTCAAGGGCCAAGACGGTGGTGCAGCC
GTTACAGGAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig38:40601..42960+

>mRNA_H-paniculata_contig38.9963.1 ID=mRNA_H-paniculata_contig38.9963.1|Name=mRNA_H-paniculata_contig38.9963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2334bp|location=Sequence derived from alignment at H-paniculata_contig38:40601..42960+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCTCGCTGTACCTGGTGCTGTCCGATCCCACGAGTGCGCTCAAGAA
CTTTCAGATCGCTCTAAAGCCCTCACCAGGCGAGTTCATGGCCTCGCTGT
ACCTGGTGCTGTCCGATCCCACGAGTGCGCTCAAGAACTTTCAGATCGCT
CTAAAGCCCTCACCAGGCGAGTTCGGTGTCCTAACTCAACAAGAGAAAGA
TAAGGAGGAGGTCCAAAACCGAAAGCTGATGTTACTAGATGAGACAGGTC
GAGCTCAAGCTTTAACTGTTTTGCGCGCTGAGGAGGTTGAGCGTAAGCGT
GAGCAAGCCCAATCGGAGGCCGCGAGGAGGAAAAAAGCTGCGACGGGAAT
ATACCAATGCCTCCTGGAAATGAAAGAGCCTGTGGCGGCTGCTCAGGCTG
CGAGGGTCCGACTTCGCATGTGCAACGGGGAGGCGGCCGACGACGAACGT
ATACAGGGTGTCCTAACTCAACAAGAGAAAGATAAGGAGGAGGTCCAAAA
CCGAAAGCTGATGTTACTAGATGAGACAGGTCGAGCTCAAGCTTTAACTG
TTTTGCGCGCTGAGGAGGTTGAGCGTAAGCGTGAGCAAGCCCAATCGGAG
GCCGCGAGGAGGAAAAAAGCTGCGACGGGAATATACCAATGCCTCCTGGA
AATGAAAGAGCCTGTGGCGGCTGCTCAGGCTGCGAGGGTCCGACTTCGCA
TGTGCAACGGGGAGGCGGCCGACGACGAACGTATACAGGTGAGGAAGGAG
ATCCATGAAACGCTACTCCGGTTCCAAGGGCTCATCGAATCTGAAGCCAC
AAACCAAGGCGCGTGGCTCACGGAATCTGCTGGAGTATTGATCGACCTAC
ACACCTCTGTTCTGCAAAGCCTCTGCGGAAAAGCATCGCACGCATCGCCG
TGTTGCCAGCCGTCACAGAGCGATATAACCCGTGCGCGGTCGATAACGAT
GGACGCTGATGCAGAAACTAACAGCATCCGGTTAGACAGAGCAGATGGCC
AGAAAGAAAGATGCCTTAGTGCTGGAGGCTCGGCGGTGTTGGAGAGTACG
CTAAGCCAACGAGATAACGAAACCGTAGGTATGGATGTTAATAGAGGTGA
GAGTTTGGAGCGGGGAAGAACTACGGATAACGAACAAGGCAGGAGACTTC
GTGATTTGGGTCGGATGCTGGCATACAAGCGTCAATTTGCCGCCAGCCGA
AAGGTGAGGAAGGAGATCCATGAAACGCTACTCCGGTTCCAAGGGCTCAT
CGAATCTGAAGCCACAAACCAAGGCGCGTGGCTCACGGAATCTGCTGGAG
TATTGATCGACCTACACACCTCTGTTCTGCAAAGCCTCTGCGGAAAAGCA
TCGCACGCATCGCCGTGTTGCCAGCCGTCACAGAGCGATATAACCCGTGC
GCGGTCGATAACGATGGACGCTGATGCAGAAACTAACAGCATCCGGTTAG
ACAGAGCAGATGGCCAGAAAGAAAGATGCCTTAGTGCTGGAGGCTCGGCG
GTGTTGGAGAGTACGCTAAGCCAACGAGATAACGAAACCGTAGGTATGGA
TGTTAATAGAGGTGAGAGTTTGGAGCGGGGAAGAACTACGGATAACGAAC
AAGGCAGGAGACTTCGTGATTTGGGTCGGATGCTGGCATACAAGCGTCAA
TTTGCCGCCAGCCGAAAGGCCTTCGAAGACGCACTCCAAGGTGGGCCGGA
GGAGGAGTACTTGCGAGAGAGACGCAGATGCCATACCAAAGGATCCTACT
TTGACATGGCGCTAAGCGAAGCATCAACAGTCATGCAGCTTGGTATCGTG
TCAAGGCCTTCGAAGACGCACTCCAAGGTGGGCCGGAGGAGGAGTACTTG
CGAGAGAGACGCAGATGCCATACCAAAGGATCCTACTTTGACATGGCGCT
AAGCGAAGCATCAACAGTCATGCAGCTTGGTATCGTGTCAAGGTGGCAAG
GTGGTGTCGGAGCCGACGAAACCCGCCGCCGCAATCTGTTTGATCATACG
GGCTTCACTGGCGTTCACCACGGCGCGGAGACTCTTGTGACCTCTATGCC
ACCGACAGGATGGGCGACGGGGATGTCGGATCTTCAGTATGCGGATCGAT
TGTCAAGGGCCAAGACGGTGGTGCAGCCGTTACAGGAAGTGGCAAGGTGG
TGTCGGAGCCGACGAAACCCGCCGCCGCAATCTGTTTGATCATACGGGCT
TCACTGGCGTTCACCACGGCGCGGAGACTCTTGTGACCTCTATGCCACCG
ACAGGATGGGCGACGGGGATGTCGGATCTTCAGTATGCGGATCGATTGTC
AAGGGCCAAGACGGTGGTGCAGCCGTTACAGGAA
back to top