mRNA_H-paniculata_contig1156.998.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1156.998.1
Unique NamemRNA_H-paniculata_contig1156.998.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1156.998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1156contigH-paniculata_contig1156:24727..25609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size278
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928860.2853022-CDS-H-paniculata_contig1156:24726..249171622928860.2853022-CDS-H-paniculata_contig1156:24726..24917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1156 24727..24917 +
1691480648.8389077-CDS-H-paniculata_contig1156:24726..249171691480648.8389077-CDS-H-paniculata_contig1156:24726..24917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1156 24727..24917 +
1622928860.3029125-CDS-H-paniculata_contig1156:25523..256081622928860.3029125-CDS-H-paniculata_contig1156:25523..25608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1156 25524..25608 +
1691480648.849959-CDS-H-paniculata_contig1156:25523..256081691480648.849959-CDS-H-paniculata_contig1156:25523..25608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1156 25524..25608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1156.998.1prot_H-paniculata_contig1156.998.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1156 24727..25608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1156.998.1

>prot_H-paniculata_contig1156.998.1 ID=prot_H-paniculata_contig1156.998.1|Name=mRNA_H-paniculata_contig1156.998.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
ELGGGPTGLDSRCVCEQASLGGEPAPLGQAHGEIQNTSLENSEAGTLAYA
ARPNSETHSSKVFRIADREREEPTGTENHRPTMPLVRSDPLS
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mRNA from alignment at H-paniculata_contig1156:24727..25609+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1156.998.1 ID=mRNA_H-paniculata_contig1156.998.1|Name=mRNA_H-paniculata_contig1156.998.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=883bp|location=Sequence derived from alignment at H-paniculata_contig1156:24727..25609+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTAGGAGGAGGACCCACCGGCCTTGATTCCCGCTGTGTTTGCGAGCA
GGCTTCCCTCGGGGGGGAGCCCGCGCCATTGGGGCAGGCTCACGGAGAGA
TCCAGAATACGTCGCTAGAAAATTCCGAGGCGGGGACGCTAGCCTACGCT
GCGCGTCCCAACAGTGAAACGCACTCTTCTAAAGTGTTCAGGTACACCAG
CGTGGTATTGACTTGCATGCAAATGTCTGGCACGCGTCTATTGTTGCGAA
ATTATGGTAGAGCACGACACAGCAGGTGTTTGCAATTTCAAGTATGACAG
ATATTGTTTTCGTTGGAGTGGCGACGTGTTGATCATCGTCCGAAAGCGGG
GTCGGTCGTGCTCACGGTTTGCAAATGTATATGTATGATATTGTAGTTGG
AGGGGTCACCTTGCCCCCCGCTCATAATGCTGTATACTACTTCCTGGCGG
GTGCACTTCGAATTAAAGTGATCGTACTGTACCTTCGTGGCGACGGTGAT
GAACACGCACCCGAACGGGGGCATTAATTGTATATCTACCTCGCGCTACC
TATACTCTACGCCCCCTACACCGGCGTATCCTCGTCGGTTGGACTGCTCA
AGTGATTGAGATAGGGAGGGCAAGGGAAACGACCGAATTCTATGTCTTGT
GTAGCGTGGGGGAAAACGGGTACAGTGTGCGTTTTGACCGATACTATGTA
CCTTGTTGATCGCAGAAGAATGAGAGTTCGCTCGAACGCGCGAAGAATCT
ACTGTTCTCCCCTGCCTCACCTCCCAAATCGTTCATTGCATGCGCAGGAT
CGCGGACCGGGAGCGGGAGGAACCCACAGGCACTGAGAACCACCGCCCCA
CTATGCCCTTGGTGCGCTCCGACCCTCTGTCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig1156:24727..25609+

>mRNA_H-paniculata_contig1156.998.1 ID=mRNA_H-paniculata_contig1156.998.1|Name=mRNA_H-paniculata_contig1156.998.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig1156:24727..25609+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTAGGAGGAGGACCCACCGGCCTTGATTCCCGCTGTGTTTGCGAGCA
GGCTTCCCTCGGGGGGGAGCCCGCGCCATTGGGGCAGGCTCACGGAGAGA
TCCAGAATACGTCGCTAGAAAATTCCGAGGCGGGGACGCTAGCCTACGCT
GCGCGTCCCAACAGTGAAACGCACTCTTCTAAAGTGTTCAGGAGCTAGGA
GGAGGACCCACCGGCCTTGATTCCCGCTGTGTTTGCGAGCAGGCTTCCCT
CGGGGGGGAGCCCGCGCCATTGGGGCAGGCTCACGGAGAGATCCAGAATA
CGTCGCTAGAAAATTCCGAGGCGGGGACGCTAGCCTACGCTGCGCGTCCC
AACAGTGAAACGCACTCTTCTAAAGTGTTCAGGATCGCGGACCGGGAGCG
GGAGGAACCCACAGGCACTGAGAACCACCGCCCCACTATGCCCTTGGTGC
GCTCCGACCCTCTGTCTGATCGCGGACCGGGAGCGGGAGGAACCCACAGG
CACTGAGAACCACCGCCCCACTATGCCCTTGGTGCGCTCCGACCCTCTGT
CT
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