mRNA_H-paniculata_contig37862.9935.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig37862.9935.1
Unique NamemRNA_H-paniculata_contig37862.9935.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37862.9935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37862contigH-paniculata_contig37862:768..1316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size260
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930161.8870435-CDS-H-paniculata_contig37862:767..9451622930161.8870435-CDS-H-paniculata_contig37862:767..945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37862 768..945 +
1691481172.7162478-CDS-H-paniculata_contig37862:767..9451691481172.7162478-CDS-H-paniculata_contig37862:767..945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37862 768..945 +
1622930161.907412-CDS-H-paniculata_contig37862:1236..13161622930161.907412-CDS-H-paniculata_contig37862:1236..1316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37862 1237..1316 +
1691481172.729301-CDS-H-paniculata_contig37862:1236..13161691481172.729301-CDS-H-paniculata_contig37862:1236..1316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37862 1237..1316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37862.9935.1prot_H-paniculata_contig37862.9935.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig37862 768..1316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig37862.9935.1

>prot_H-paniculata_contig37862.9935.1 ID=prot_H-paniculata_contig37862.9935.1|Name=mRNA_H-paniculata_contig37862.9935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
TSSTPSHSSTGDRKRADVGPKADGHRTASEVGGGLQSATPLTTTPATASS
TSMTSPSPPEPFPEMSPHRRGYCVRHHAGPARPPR*
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mRNA from alignment at H-paniculata_contig37862:768..1316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig37862.9935.1 ID=mRNA_H-paniculata_contig37862.9935.1|Name=mRNA_H-paniculata_contig37862.9935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=549bp|location=Sequence derived from alignment at H-paniculata_contig37862:768..1316+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCTCGTCGACTCCGAGTCACTCGTCGACGGGGGACCGCAAGCGAGCAGA
TGTTGGTCCCAAGGCCGACGGTCACCGGACGGCGAGCGAGGTCGGTGGCG
GCCTCCAGTCGGCGACTCCTCTCACCACCACGCCGGCGACCGCGAGCAGC
ACCTCCATGACCTCTCCATCCCCGCCAGGTGCGTACGGAACCGCCAGCGC
TACTCGCAATCGACGCGTCAACAACGTGCAGCATATCCCGAACAAAGATG
TAATAGCAGTGTCGGGCCATCTTCGTCCAGTGACTCTAGGCGTTTGCGCT
CCGACGTCGCTGCATGTATATACACGTAGAAACGTCGCATACACTCACGA
TATGCCTCAAGTCGTTATGATTAATAGTCGTACCCTCGCTTTCCCCCTAC
GGCCTCGCCGCCCCGCCCCCGTCGTCTCGCCTGTCTTTGGACAACTGACA
CGCCTCTACCTTTCTTTAGAGCCCTTCCCCGAGATGTCGCCACACCGCCG
CGGATATTGCGTGCGGCATCACGCCGGCCCTGCACGGCCACCTAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig37862:768..1316+

>mRNA_H-paniculata_contig37862.9935.1 ID=mRNA_H-paniculata_contig37862.9935.1|Name=mRNA_H-paniculata_contig37862.9935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig37862:768..1316+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCTCGTCGACTCCGAGTCACTCGTCGACGGGGGACCGCAAGCGAGCAGA
TGTTGGTCCCAAGGCCGACGGTCACCGGACGGCGAGCGAGGTCGGTGGCG
GCCTCCAGTCGGCGACTCCTCTCACCACCACGCCGGCGACCGCGAGCAGC
ACCTCCATGACCTCTCCATCCCCGCCAGACCTCGTCGACTCCGAGTCACT
CGTCGACGGGGGACCGCAAGCGAGCAGATGTTGGTCCCAAGGCCGACGGT
CACCGGACGGCGAGCGAGGTCGGTGGCGGCCTCCAGTCGGCGACTCCTCT
CACCACCACGCCGGCGACCGCGAGCAGCACCTCCATGACCTCTCCATCCC
CGCCAGAGCCCTTCCCCGAGATGTCGCCACACCGCCGCGGATATTGCGTG
CGGCATCACGCCGGCCCTGCACGGCCACCTAGGTAAAGCCCTTCCCCGAG
ATGTCGCCACACCGCCGCGGATATTGCGTGCGGCATCACGCCGGCCCTGC
ACGGCCACCTAGGTAA
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