mRNA_H-paniculata_contig1152.981.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1152.981.1
Unique NamemRNA_H-paniculata_contig1152.981.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1152.981.1 vs. uniprot
Match: A0A6H5KCR2_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCR2_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 1.670e-62
Identity = 97/124 (78.23%), Postives = 115/124 (92.74%), Query Frame = 1 
Query:    1 ELSMSEISTHDSKDSAWLVIKDMNDGDTPKVYDVTSYLDDHPGGAEVMLEVAGQDATNMFEDIGHSSDARTEMKKYEIGLLKLTEEEKEQLAVEAAKKAARKHKEGGGLNPLAVLVLLFAIAVG 372
            E SM+E++TH +K+S WLVIKDMNDGDTPKVYDV+SYL+DHPGGAEVM+EVAGQDATNMFEDIGHSSDARTEMKK++IGLLKLT+EE+ ++A EAAKKA R  ++GGGLNPLAVLVLL AI++G
Sbjct:    9 EYSMTEVATHTTKESTWLVIKDMNDGDTPKVYDVSSYLNDHPGGAEVMMEVAGQDATNMFEDIGHSSDARTEMKKFQIGLLKLTDEERAKIAQEAAKKAERASRQGGGLNPLAVLVLLLAISIG 132
[Close]
BLAST of mRNA_H-paniculata_contig1152.981.1 vs. uniprot
Match: A0A1E7F1Z9_9STRA (Cytochrome b5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F1Z9_9STRA)

HSP 1 Score: 118 bits (296), Expect = 7.780e-32
Identity = 63/123 (51.22%), Postives = 92/123 (74.80%), Query Frame = 1 
Query:    1 ELSMSEISTHDSKDSAWLVIKDMNDGDTPKVYDVTSYLDDHPGGAEVMLEVAGQDATNMFEDIGHSSDARTEMKKYEIGLLKLTEEEKEQLAVEAAKKAARKHKEGGGLNPLAVLVLLFAIAV 369
            E + +E+S H  ++  W++I + ++G + KVYDV+ YLDDHPGGAEVML+V+GQ+A   FEDIGHS DAR E+KKY IG  KL+EEE E+L +EA K+A    ++GGG +P+ +++L+  IA+
Sbjct:   11 EYTSAEVSKHTLEEDCWMIIGNESNGGS-KVYDVSKYLDDHPGGAEVMLDVSGQNADEFFEDIGHSGDARKELKKYLIGTYKLSEEEIEKLKIEAEKRA----QQGGG-SPMIIIILVALIAI 127
[Close]
BLAST of mRNA_H-paniculata_contig1152.981.1 vs. uniprot
Match: A0A448ZES5_9STRA (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZES5_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.430e-31
Identity = 62/121 (51.24%), Postives = 87/121 (71.90%), Query Frame = 1 
Query:    1 ELSMSEISTHDSKDSAWLVIKDMNDGDTPKVYDVTSYLDDHPGGAEVMLEVAGQDATNMFEDIGHSSDARTEMKKYEIGLLKLTEEEKEQLAVEAAKKAARKHKEGGGLNPLAVLVLLFAI 363
            E +  E+S H S+D  W++I + N+G  PKVYDV+ YLDDHPGGAEVML+V+GQ+A   FEDIGHS++AR E+KKY IG  K++EEE E++ + A K+A     + GG + + ++V L AI
Sbjct:    9 EYTSEEVSKHTSEDDCWMIIGNENNGG-PKVYDVSKYLDDHPGGAEVMLDVSGQNADEFFEDIGHSAEARAELKKYLIGTYKMSEEELEKVRIAAEKRA----NQTGGSSVMIIMVALVAI 124
[Close]
BLAST of mRNA_H-paniculata_contig1152.981.1 vs. uniprot
Match: A0A6U1YTJ4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A6U1YTJ4_TRICV)

HSP 1 Score: 117 bits (294), Expect = 1.520e-31
Identity = 60/91 (65.93%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:    1 ELSMSEISTHDSKDSAWLVIKDMNDGDTPKVYDVTSYLDDHPGGAEVMLEVAGQDATNMFEDIGHSSDARTEMKKYEIGLLKLTEEEKEQL 273
            E  MSE+  H+  D  WLVI + N G  PKVYDVTSYLDDHPGGAEVML+V GQ+A   FEDIGHS+DAR E+KKY+IG+LKL++EE EQ+
Sbjct:    8 EYRMSEVKDHNKNDDCWLVIGNANTGG-PKVYDVTSYLDDHPGGAEVMLDVGGQNADEFFEDIGHSNDAREELKKYQIGVLKLSKEEIEQM 97
[Close]
BLAST of mRNA_H-paniculata_contig1152.981.1 vs. uniprot
Match: A0A7S1E0H8_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E0H8_9STRA)

HSP 1 Score: 117 bits (292), Expect = 3.060e-31
Identity = 63/124 (50.81%), Postives = 93/124 (75.00%), Query Frame = 1 
Query:    1 ELSMSEISTHDSKDSAWLVIKDMNDGDTPKVYDVTSYLDDHPGGAEVMLEVAGQDATNMFEDIGHSSDARTEMKKYEIGLLKLTEEEKEQLAVEAAKKAARKHKEGGGLNPLAVLVLLFAIAVG 372
            + ++ E+S ++++DS W++I +M++G  PKVYDVT YLDDHPGGAEVML+VAGQDA   FEDIGHS+DAR E+K++ IG L + +  K ++  +A K  A K KEG  L+P+ ++VL+  +A+G
Sbjct:    8 QYTLDEVSKNNTEDSCWMIIGNMSNGG-PKVYDVTKYLDDHPGGAEVMLDVAGQDADEFFEDIGHSADAREELKRHLIGDLLMDDATKAKMKADAEK--ALKKKEGS-LSPVLMIVLVAILAIG 127
[Close]
BLAST of mRNA_H-paniculata_contig1152.981.1 vs. uniprot
Match: A0A7S3P723_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P723_9STRA)

HSP 1 Score: 116 bits (290), Expect = 7.300e-31
Identity = 63/122 (51.64%), Postives = 85/122 (69.67%), Query Frame = 1 
Query:    1 ELSMSEISTHDSKDSAWLVIKDMNDGDTPKVYDVTSYLDDHPGGAEVMLEVAGQDATNMFEDIGHSSDARTEMKKYEIGLLKLTEEEKEQLAVEAAKKAARKHKEGGGLNPLAVLVLLFAIA 366
            E ++ E++ H   +S WL+I +  +G  P VYDVT YLDDHPGGAEVML+VAGQDA   FEDIGHS +AR E+KKY IG LK+ E  K+++  E A+KAA K   GGG   + ++ ++ A+A
Sbjct:    9 EYTLDEVAEHTKTESCWLIIGNEKNGG-PMVYDVTKYLDDHPGGAEVMLDVAGQDADEFFEDIGHSKEAREELKKYLIGSLKIDEATKKKMEEEKARKAAAK---GGGFPLVPLVGIILAVA 126
[Close]
BLAST of mRNA_H-paniculata_contig1152.981.1 vs. uniprot
Match: A0A7S2R750_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R750_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.420e-30
Identity = 65/124 (52.42%), Postives = 88/124 (70.97%), Query Frame = 1 
Query:    1 ELSMSEISTHDSKDSAWLVIKDMNDGDTPKVYDVTSYLDDHPGGAEVMLEVAGQDATNMFEDIGHSSDARTEMKKYEIGLLKLTEEEKEQLAVEAAKKAARKHKEGGGLNPLAVLVLLFAIAVG 372
            E ++ EIS H+++   W +I + ++G  PKVYD+T YLDDHPGGAEV+L++AGQDA   FEDIGHSSDAR E+K+Y IG LK+ E E  + A  AA+  A+K  EGG  N + +L+ + AIA G
Sbjct:   51 EHTVDEISKHNTEGDCWCIIGNASNGG-PKVYDITKYLDDHPGGAEVLLDLAGQDADEFFEDIGHSSDARDELKRYLIGALKIDEAELARRAA-AAEAKAKKEAEGGS-NLVFILIAILAIAFG 171
[Close]
BLAST of mRNA_H-paniculata_contig1152.981.1 vs. uniprot
Match: A0A7S2U5A0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5A0_9STRA)

HSP 1 Score: 113 bits (282), Expect = 7.080e-30
Identity = 62/122 (50.82%), Postives = 82/122 (67.21%), Query Frame = 1 
Query:   10 MSEISTHDSKDSAWLVIKDMNDGDTPKVYDVTSYLDDHPGGAEVMLEVAGQDATNMFEDIGHSSDARTEMKKYEIGLLKLTEEEKEQLAVEAAKKAARKHKEGGGLNPLAVLVL-LFAIAVG 372
            M E++ H S+   WL+I +MN+G  PKVYD+TSYLDDHPGGAEVML+V+GQD    FEDIGHS+DAR E+KKY IG LK+ E           + A RK +  GG   + VL++ + A+ +G
Sbjct:    1 MEEVAKHTSEKDCWLIIGNMNNGG-PKVYDITSYLDDHPGGAEVMLDVSGQDGDEFFEDIGHSNDAREELKKYLIGTLKVDEA----TLARNLELAKRKQEGAGGSGQMMVLLIAILALIIG 117
[Close]
BLAST of mRNA_H-paniculata_contig1152.981.1 vs. uniprot
Match: A0A7S3V505_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V505_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.380e-29
Identity = 63/122 (51.64%), Postives = 90/122 (73.77%), Query Frame = 1 
Query:    1 ELSMSEISTHDSKDSAWLVIKDMNDGDTPKVYDVTSYLDDHPGGAEVMLEVAGQDATNMFEDIGHSSDARTEMKKYEIGLLKLTEEEKEQLAVEAAKKAARKHKEGGGLNPLAVLVLLFAIA 366
            E++M+E++ H++++  WLVI +   G  PKVYDVT+YLDDHPGGAEV+L+V+GQD+   FEDIGHS DAR E++K  +G+LKL E E ++ A EAA+ AA   K GGG   + ++ ++ AIA
Sbjct:    8 EITMTEVAKHNTQEDCWLVIGNDRTGG-PKVYDVTTYLDDHPGGAEVLLDVSGQDSDEFFEDIGHSKDAREELEKLLVGVLKLDEAEIQRRA-EAAQAAA--DKAGGGSTFIVLIGIILAIA 125
[Close]
BLAST of mRNA_H-paniculata_contig1152.981.1 vs. uniprot
Match: A0A7R9WGS1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WGS1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.610e-29
Identity = 54/87 (62.07%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:    1 ELSMSEISTHDSKDSAWLVIKDMNDGDTPKVYDVTSYLDDHPGGAEVMLEVAGQDATNMFEDIGHSSDARTEMKKYEIGLLKLTEEE 261
            E+++ E++ HD +D  WL+I + N G  PKVYDVT YLDDHPGGAEVML+V G+DA   FEDIGHS+DAR E+KK++IG+LKL+ EE
Sbjct:   41 EITLEEVAKHDKQDDCWLIIGNANTGG-PKVYDVTKYLDDHPGGAEVMLDVGGKDADEFFEDIGHSNDARDELKKHQIGVLKLSPEE 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1152.981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCR2_9PHAE1.670e-6278.23Cytochrome b5 heme-binding domain-containing prote... [more]
A0A1E7F1Z9_9STRA7.780e-3251.22Cytochrome b5 n=1 Tax=Fragilariopsis cylindrus CCM... [more]
A0A448ZES5_9STRA1.430e-3151.24Cytochrome b5 heme-binding domain-containing prote... [more]
A0A6U1YTJ4_TRICV1.520e-3165.93Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1E0H8_9STRA3.060e-3150.81Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S3P723_9STRA7.300e-3151.64Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]
A0A7S2R750_9STRA1.420e-3052.42Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2U5A0_9STRA7.080e-3050.82Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3V505_9STRA1.380e-2951.64Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7R9WGS1_9STRA2.610e-2962.07Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1152contigH-paniculata_contig1152:2933..7031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.8
Seed ortholog evalue5.8e-48
Seed eggNOG ortholog2880.D7FNS4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.heme binding
EggNOG OGsCOG5274@1,KOG0537@2759
Ec32 ortholog descriptionCytochrome b5-like heme/steroid binding domain
Ec32 orthologEc-01_004430.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size378
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1152.981.1prot_H-paniculata_contig1152.981.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1152 2933..7022 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928857.6501417-CDS-H-paniculata_contig1152:2932..30641622928857.6501417-CDS-H-paniculata_contig1152:2932..3064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1152 2933..3064 -
1691480647.7455163-CDS-H-paniculata_contig1152:2932..30641691480647.7455163-CDS-H-paniculata_contig1152:2932..3064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1152 2933..3064 -
1622928857.666628-CDS-H-paniculata_contig1152:3867..40341622928857.666628-CDS-H-paniculata_contig1152:3867..4034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1152 3868..4034 -
1691480647.75657-CDS-H-paniculata_contig1152:3867..40341691480647.75657-CDS-H-paniculata_contig1152:3867..4034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1152 3868..4034 -
1622928857.6820285-CDS-H-paniculata_contig1152:6952..70221622928857.6820285-CDS-H-paniculata_contig1152:6952..7022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1152 6953..7022 -
1691480647.7647123-CDS-H-paniculata_contig1152:6952..70221691480647.7647123-CDS-H-paniculata_contig1152:6952..7022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1152 6953..7022 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928857.6929314-UTR-H-paniculata_contig1152:7022..70311622928857.6929314-UTR-H-paniculata_contig1152:7022..7031Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1152 7023..7031 -
1691480647.7734394-UTR-H-paniculata_contig1152:7022..70311691480647.7734394-UTR-H-paniculata_contig1152:7022..7031Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1152 7023..7031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1152.981.1

>prot_H-paniculata_contig1152.981.1 ID=prot_H-paniculata_contig1152.981.1|Name=mRNA_H-paniculata_contig1152.981.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
MSEISTHDSKDSAWLVIKDMNDGDTPKVYDVTSYLDDHPGGAEVMLEVAG
QDATNMFEDIGHSSDARTEMKKYEIGLLKLTEEEKEQLAVEAAKKAARKH
KEGGGLNPLAVLVLLFAIAVGE*
back to top

mRNA from alignment at H-paniculata_contig1152:2933..7031-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1152.981.1 ID=mRNA_H-paniculata_contig1152.981.1|Name=mRNA_H-paniculata_contig1152.981.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4099bp|location=Sequence derived from alignment at H-paniculata_contig1152:2933..7031- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTGTCGATGTCAGAAATTTCTACCCACGACAGCAAGGACAGTGCCTG
GCTCGTCATAAAAGACATGAACGATGGTGGTGAGCCAGAGTCTGTAGAGA
ACCTTCGTCTAGCAGCGATTGTTCCTTCCTACTGACTCTTGTGCTGTGGT
CTATGGCTGGACTACATATTGCTATTCTCTATTAGTCAATGTCTCTTATG
TGCTTCAAAAGAGGCTGTTATTGGACTGGCTATGCCAAACCGTCAACCGT
ACTGATTAATCAAAGGTAAGTCTAATACCATTACCCGCAAAGGCATTTGA
TTTCGAGCACAGCTGGTTATTTTCGTCCTTTGCATTTTGGCAATTTGACA
CCTGCGCGTGTAATGCAGCAGTACTCTACGGTTTACAGCACATCCATGCA
ACACCGCACAGAGATAAACCCTGAGACACAAACCTTTGTTCTCGTTTCAG
AATTCGCCACATGTGAATGCGTCATGCGCTGCCGATCATCAGAGCCACTT
TCATGAGACCAAGAGACCTCCGACACATACTGTAAGATAGGTAGCAAACA
AAACAGGACGTCGGTATTGAGCGTGTGCGTCACGTACGTCTTCACTCTTG
TTGTGGAGGCTGGACCATTCAACACCAACCCAGTCCAGTCCAGTCCAGCA
GGTAATTGCCGCGGTTGGGCTGGCTTTCCTACATTTCTGTCGCTGTTACA
AGTGACAAGGACCCCATGTAGTCCTTGCCTGTTGTTCCACAGCTCGCTGC
TTGCCACTACTCTGAATTGATGGTTTTCCCTTTGACCCGCATTCTTGCTT
CTCCTTCGGCGATAGATAACATGGTATGTTGTGTATGCATCGTACTTATC
CATGAAATCAAATCACCCGGGGCGATGTTAACTTCCCTGCTTCCAAATTC
CACCTTTTTTTTCGATATAGTCTCTCGCTATGCTTGCTTACTTCCTGCTC
AATAGAATCATAGCCCAGCTATCTAATGACATATTTTGACGAAGACAAAC
ACCGGGATTTTCAAATCGTCAAACGACGCATTTTGTCAAGAAAAAGTACG
TAGTTTTCCGAGAAAATTGGACACCAATAAAACGTCACATGTCATCCCCT
GGAGGAGGGTATTATACTCGGTAAATCACGACAATCAATGACCGTGGATA
CTACTAGTCATAGCTCTATACAACGTACTGCGACGTCGTTTGCCGTGGTT
GTGATACCCAGCCAAACACCCGCCGGCAGCTCTCCCATGCGATTGAGAAA
ACCTTACAAGGCAAGCCTCCCCAAGGTACCGCGTTAGTACAGGCAGCACC
AGTAACCAGTCTAAGCATTACAGCGGTTGAGGGAGGACAAGCGAGTGCGA
CGCCATCCAGATTTCCTTCACTCCCTGCTGAACATAACGCTCTGTTTAAG
GTATTATCGTTACATTGGTACTCTATCCCCTCTGTCCTGTCATGGTCGCT
GTTCTTTATTGACACTGGTGCATGCGGTTATGACCAAACTTAGTTCTTAT
CTGACTGATGTGGATTGCAAGTTCAATTTTATGGCTTGTTCTCACACAAA
CTTGTGAAACATCTGTTTTACATCTCGCGAAAAAAATCCTGGGGCAGCGG
GCATACCGGATATTTATTTGCGGGGTTGCACAACTACATGTCCCCCACAC
AATATTGGAGGGTTATACTAGCGCGCGCAAAGGCCTCAATGTATGTAGAT
GTTTTACAAGTCAACCGTTTGCTGTGCCGTGGCGGGGTGTGACAACAACT
TGTAACTATTTCTTTTTCCTCGTGCACTCAGCAATGAAGGAGATGTCATG
AAGAGTTAGTTTTTTTTTGTTTTTTTTTAACCCCCGGAAGGTTAGGCAAA
AACCCATGCCGCTGCTTCCATGAAGAGTTAGTGTACTTAAACCCAGCTAC
CGTCGCTACATCGAAAGGGCTTGATGATTGTGGTGTCACCTGTCACTCGC
TTGTACATGACTCTCTTGCTTGCTCTTGGAATCTATTGCATAACGCCCCT
TCGTTTGTGGTGTTGATTCATATGATGATGATAATGGTATTATTTGACCG
CCGACCACCCACCGTGCTCTGCCGTATAAACATATCACACCCTGGACAAC
TATGTTAGTTGGTGTTAGTTGGTAGTTGTGACTAAGGAAACTGCTGGTTC
AGAATCTTGTGCAACTAGTTGCCTGCAGACAACTATTGGTTCAGAATCTT
GTGCAACTAGTTGCACAAGATTCTGAACCAGCAGTTTCCTTAGTCACAAC
TACCAACTAACACCAACTAACATAGTTGTCCAGGGTGTGAAACATATCCA
TACGGGTGGCACGTTGCGTATTTTTTTTCGCCATATAGAGCCCACTTCTT
CAACTTTTGATACAACACTTATGGTATTGATAAATCAAGAGTTGCCTAAT
ATGAGGAAGGAGCTGTCCAGTGCTGCTGTTTGAGTGATGACCAATTCCCG
TGGTGATGTAATGGGTTCTTGGACATTGATCGGCCGCCTGCCCTCGCACA
CACTTAGCAAGGAACGAGACTTTAACAGCAGGAGATTTACTCCGAAACGG
GCTCTTTATTACCATCGGCACTGTCTGGTACACATGGCAGGATACTTGCA
CATTTATCTAGTTTTGTATACTCGAATCTTTTGTTCTTACAGTGCGAGGA
AGGAGCGCATCGTATTTTACCCCAGTTTGATCTTTAAGCGTTTTTCACTA
CCCCACGATTTGTCTGAGTGATGTATAGACTCAAGACGGACACAGTGAAG
CAAGGGTTCGTAGCAAAATCTGGTGCCCATGCAACGACATTGTACACTTG
AAACCACGCGCCCCCACGAGAAAACGAAATACAGTGTACATGAAAAATAA
AGCCATCCTGTTTCCTACCCATTTGCCATATTGGTCGCTACGTTCATCCA
CCCTCACAGCAACCACACAGATAGTGTCCTCAGGAGTAAAACAGAACAAA
ATGAAAACATGCCCCCCCCCCCCCCGCGCTCTCCTCTTTGAACATAGACA
CGCCGAAGGTTTACGACGTGACGAGCTACCTGGACGACCACCCGGGAGGC
GCAGAAGTAATGCTGGAAGTAGCTGGGCAGGACGCAACCAACATGTTCGA
GGATATCGGGCACTCGTCGGACGCGCGAACAGAGATGAAAAAGTATGAGA
TAGGACTCCTCAAGGTAAATCTGAATCAAGAACAGCAACATTTTCCTCCC
CTTTTTAATCTAGTTCCGCTGATGAGTATATACAAGATAAGATTGAACGT
CACCTGCACAACCTCCAGATGGGTGTAATCGAGGTATAATATGAGGTTCA
GACTGATTGTTGAACTGACTAGTGTGTGGGAGGGTTAATTTGCCATACTA
AGAATTTCAGCCAGTAAAATGAGAACGTTTTTTTTTCTTTCATGGCGTCA
GTCGTTCGTATGAGGTCTTTTCACCTTCACCCCTCTCCCCGAGAAAAACG
CCAATGATAATAGAAATAATCTGTGGGTTTTCTAAATATTTGAACGACAG
ATATTTCTACATTATATACACATCCTGTTCATGGCCATGCTGTTGTTCCT
CGTGGTGTACTTGACTGTGTTGTTGTGCGTACTTGCAGAAAAGGTCGTTT
ATAGGTTTGCCCCCACTTTTTGGTTATGTAGCGTACACCGCGGCCATAGA
AGTGGGTCATGAGCCCAAAACAGGAATAATAACCCATGATCAAATGCTGC
TTCCACTGACACTGCTTAGAGTAGCTAGTGTAACATTGGAAAGTAGGCCG
TCAACTTCATCTACTCGAAACGTCATGCTCCTACGACTGACTGACTGGCC
TCCTGCGGGGACTCCACGTTTTCATGTGACCAGTCTACGAAGAACACACT
GTTTATTTCTGCAAGATTTAGTTATCGCAAAGTGAAATATTGTCTCACAA
GGCCTCAATTATGTTTATTGAATATATATATATATATATATTTTTTCCCG
TGGTGCGGGGAGTACAGCTGACAGAAGAAGAGAAGGAGCAACTTGCGGTA
GAGGCGGCGAAGAAAGCGGCGAGAAAGCACAAAGAAGGGGGTGGACTCAA
CCCCCTCGCGGTTCTGGTTTTGCTATTTGCGATTGCAGTTGGTGAGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1152:2933..7031-

>mRNA_H-paniculata_contig1152.981.1 ID=mRNA_H-paniculata_contig1152.981.1|Name=mRNA_H-paniculata_contig1152.981.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig1152:2933..7031- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGAAATTTCTACCCACGACAGCAAGGACAGTGCCTGGCTCGTCAT
AAAAGACATGAACGATGGTGATGTCAGAAATTTCTACCCACGACAGCAAG
GACAGTGCCTGGCTCGTCATAAAAGACATGAACGATGGTGACACGCCGAA
GGTTTACGACGTGACGAGCTACCTGGACGACCACCCGGGAGGCGCAGAAG
TAATGCTGGAAGTAGCTGGGCAGGACGCAACCAACATGTTCGAGGATATC
GGGCACTCGTCGGACGCGCGAACAGAGATGAAAAAGTATGAGATAGGACT
CCTCAAGACACGCCGAAGGTTTACGACGTGACGAGCTACCTGGACGACCA
CCCGGGAGGCGCAGAAGTAATGCTGGAAGTAGCTGGGCAGGACGCAACCA
ACATGTTCGAGGATATCGGGCACTCGTCGGACGCGCGAACAGAGATGAAA
AAGTATGAGATAGGACTCCTCAAGCTGACAGAAGAAGAGAAGGAGCAACT
TGCGGTAGAGGCGGCGAAGAAAGCGGCGAGAAAGCACAAAGAAGGGGGTG
GACTCAACCCCCTCGCGGTTCTGGTTTTGCTATTTGCGATTGCAGTTGGT
GAGTGACTGACAGAAGAAGAGAAGGAGCAACTTGCGGTAGAGGCGGCGAA
GAAAGCGGCGAGAAAGCACAAAGAAGGGGGTGGACTCAACCCCCTCGCGG
TTCTGGTTTTGCTATTTGCGATTGCAGTTGGTGAGTGA
back to top