prot_H-paniculata_contig11506.973.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig11506.973.1
Unique Nameprot_H-paniculata_contig11506.973.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length150
Homology
BLAST of mRNA_H-paniculata_contig11506.973.1 vs. uniprot
Match: A0A0J7K9Z2_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K9Z2_LASNI)

HSP 1 Score: 57.4 bits (137), Expect = 9.280e-7
Identity = 45/152 (29.61%), Postives = 71/152 (46.71%), Query Frame = 0
Query:    1 MERFEINAASELSTASLGCLGPSRGDEEGGAWPFRAAVGCLVWLAMMTRLYIANSERDLAGHSHITCSRHWTAVLEIVSYLNGD-----RFSRV----ELDSSAIAHFASSVWTGISLSVVAVMLRGRVVSFSSSTQHWLVCERCALLLVTE 143
            ++RF +  A+ +STA   C      DEE    P+R AVGCL++LA+ TRL IA +    +        +HW  + +I  Y+ G      R+S       L++ + A +AS   T  S+S + +   G  + ++S  Q       C  L  TE
Sbjct:  312 LKRFNMEDANPVSTAIEKCQLMEEADEELTDVPYREAVGCLMYLAVATRLDIAYAVNYASQFLEKPGQQHWAIIKQIFKYIKGTIGLEIRYSAAWKTGVLEAYSDAGYASDTTTRKSISGIVLKYSGEAIVWASRRQD------CVSLSTTE 457          
BLAST of mRNA_H-paniculata_contig11506.973.1 vs. uniprot
Match: A0A6H5KQ05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ05_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.230e-6
Identity = 36/135 (26.67%), Postives = 66/135 (48.89%), Query Frame = 0
Query:    1 MERFEINAASELSTASLGCLGPSRGDEEGGAWPFRAAVGCLVWLAMMTRLYIANSERDLAGHSHITCSRHWTAVLEIVSYLNGDRFSRVELDSSA---IAHFASSVWTGI----SLSVVAVMLRGRVVSFSSSTQ 128
            + RF++ + S +  +    LGP +GDE+GG WP R A+G ++W++  +R  ++ + R             W A+ +IV Y  G R   +     +   +A +  + +       S+S +A  + G V+S  S+TQ
Sbjct:  263 VRRFDVQSTSRIPASPGADLGPKQGDEKGGQWPVREAIGSMMWVSTFSRPDVSFAVRA------------WDAIQKIVGYSKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVISHGSNTQ 385          
BLAST of mRNA_H-paniculata_contig11506.973.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.400e-5
Identity = 44/152 (28.95%), Postives = 64/152 (42.11%), Query Frame = 0
Query:    2 ERFEINAASELSTASLGCLGPSRGDEEGGAWPFRAAVGCLVWLAMMTRLYIANSERDLAGHSHITCSRHWTAVLEIVSYLNGDRFSRVELDSSAI----------AHFASSVWTGISLSVVAVMLRGRVVSFSSSTQHWLVCERCALLLVTE 143
            ER+ +     +   +   L     DE     PFRA VG L+W+A++TR  IANS R +A +S      HW A L I+ Y        +   S  +          A +AS      S+S   VM  G  +++ S TQ      +C  L  T+
Sbjct:  183 ERYGVEWGGGIPLPTTWKLWDFDADEPSVEHPFRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGISFQSGTVSGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQ------KCVTLSTTQ 328          
BLAST of mRNA_H-paniculata_contig11506.973.1 vs. uniprot
Match: A0A6H5KKT4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT4_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.580e-5
Identity = 40/122 (32.79%), Postives = 59/122 (48.36%), Query Frame = 0
Query:   32 WPFRAAVGCLVWLAMMTRLYIANSERDLAGHSHITCSRHWTAVLEIVSYLN-----GDRFSRVELDSSAI-----AHFASSVWTGISLSVVAVMLRGRVVSFSSSTQHWLVCERCALLLVTE 143
            +PFRA VG L+W+A++TR  IANS R +A +       HW A   I+ Y+      G  F R  +  S++     A +AS      S+S   VM  G  +++ S TQ      +C  L  T+
Sbjct:  683 YPFRALVGSLLWIALLTRPDIANSVRAVARYCSAPTLIHWKAARSILGYVVRASSLGTSFQRGTVSGSSLIAFVDADYASRAAHRRSVSGGVVMYAGGAIAWFSKTQ------KCVTLSTTQ 798          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11506.973.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A0J7K9Z2_LASNI9.280e-729.61Retrovirus-related pol polyprotein from transposon... [more]
A0A6H5KQ05_9PHAE1.230e-626.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRZ9_9PHAE1.400e-528.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKT4_9PHAE1.580e-532.79Integrase catalytic domain-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..31
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 32..52
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 117..149
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 95..116
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 53..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11506contigH-paniculata_contig11506:343..849 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11506.973.1mRNA_H-paniculata_contig11506.973.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig11506 88..2958 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig11506.973.1 ID=prot_H-paniculata_contig11506.973.1|Name=mRNA_H-paniculata_contig11506.973.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
MERFEINAASELSTASLGCLGPSRGDEEGGAWPFRAAVGCLVWLAMMTRL
YIANSERDLAGHSHITCSRHWTAVLEIVSYLNGDRFSRVELDSSAIAHFA
SSVWTGISLSVVAVMLRGRVVSFSSSTQHWLVCERCALLLVTETVRYAH*
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