mRNA_H-paniculata_contig11506.973.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11506.973.1 vs. uniprot
Match: A0A6H5KWE4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE4_9PHAE) HSP 1 Score: 146 bits (368), Expect = 1.610e-35 Identity = 85/208 (40.87%), Postives = 118/208 (56.73%), Query Frame = 1 Query: 868 FFGREFDKFCKGHSVPVNLLPQL-PKCNGVGERGLTALEAAELAATVQARVLFPSSYIPKGKSLWAEVFNWGCGALNYTATGSNLGERSPYQVWYGHPSSYSRP-PLFEPGHCGVKQSNKLAPKAQSCCYLRPRRKHPNDSMCVLTGLHTIVATRDVTWAYVRAPPAYSPSVQPQPRVSKSPQTLAAESHAQEDTSVCPTSAEEGERG 1485 FFG EF C + P P+ NGV ERGL +EAA +AA +QA+VLF +PK LWAE +W C A+N+TA +N +SPY++W+G +S++RP P +P +C ++ +KL PK ++C Y+ P R HP D VLT + TI TR+VTW + PS P P+ S P +A E + D V AEEG+ G Sbjct: 53 FFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGE-ASHARPYPFLKPAYCRWQRPSKLLPKGEACFYVGPSRDHPRDCHRVLTRVGTIQETRNVTWEAL-------PSQLPPPQSSLLPIEVAEEGGEERDDDV---DAEEGQGG 249
BLAST of mRNA_H-paniculata_contig11506.973.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE) HSP 1 Score: 142 bits (359), Expect = 2.320e-31 Identity = 80/197 (40.61%), Postives = 113/197 (57.36%), Query Frame = 1 Query: 868 FFGREFDKFCKGHSVPVNLLPQL-PKCNGVGERGLTALEAAELAATVQARVLFPSSYIPKGKSLWAEVFNWGCGALNYTATGSNLGERSPYQVWYGHPSSYSRP-PLFEPGHCGVKQSNKLAPKAQSCCYLRPRRKHPNDSMCVLTGLHTIVATRDVTWAYVRAPPAYSPSVQPQPRVSKSPQTLAAESHAQEDTSV 1452 FFG EF C + P P+ NGV ERGL +EAA +AA +QA+VLF +PK LWAE +W C A+N+TA +N +SPY++W+G +S++RP P +P +C ++ +KL PK ++C Y+ P R HP D VLT + TI TR+VTW + PS P P++S P +A E + D V Sbjct: 705 FFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGE-ASHARPYPFLKPAYCRWQRPSKLLPKGEACFYVGPSRDHPRDCHRVLTRVGTIQETRNVTWEAL-------PSQLPPPQLSLLPIEVAEEGGEECDDDV 893
BLAST of mRNA_H-paniculata_contig11506.973.1 vs. uniprot
Match: A0A6H5KKZ9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ9_9PHAE) HSP 1 Score: 134 bits (336), Expect = 1.200e-30 Identity = 71/173 (41.04%), Postives = 102/173 (58.96%), Query Frame = 1 Query: 871 FGREFDKFCKGHSVPVNLLPQL-PKCNGVGERGLTALEAAELAATVQARVLFPSSYIPKGKSLWAEVFNWGCGALNYTATGSNLGERSPYQVWYGHPSSYSRP-PLFEPGHCGVKQSNKLAPKAQSCCYLRPRRKHPNDSMCVLTGLHTIVATRDVTWAYVRAPPAYSPSVQP 1383 FG +F C + P P+ NGV ERGL +EAA +AA +QA+VLF + K LWAE + C A+N+TA N +SPY++W+G +S++RP P +P +C ++ +KL P+ ++CCY+ P R HP D VLT + TI TR+VTW A P+ P +QP Sbjct: 54 FGGDFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLSKTDRLWAEAMHLACEAINHTACSPNSDSKSPYEMWHGE-ASHARPYPFLKPAYCRWQRPSKLLPRGEACCYVGPSRDHPRDCHRVLTRVGTIQETRNVTW---EALPSQLPPLQP 222
BLAST of mRNA_H-paniculata_contig11506.973.1 vs. uniprot
Match: A0A6H5KN22_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN22_9PHAE) HSP 1 Score: 134 bits (336), Expect = 2.550e-29 Identity = 71/173 (41.04%), Postives = 102/173 (58.96%), Query Frame = 1 Query: 871 FGREFDKFCKGHSVPVNLLPQL-PKCNGVGERGLTALEAAELAATVQARVLFPSSYIPKGKSLWAEVFNWGCGALNYTATGSNLGERSPYQVWYGHPSSYSRP-PLFEPGHCGVKQSNKLAPKAQSCCYLRPRRKHPNDSMCVLTGLHTIVATRDVTWAYVRAPPAYSPSVQP 1383 FG +F C + P P+ NGV ERGL +EAA +AA +QA+VLF + K LWAE + C A+N+TA N +SPY++W+G +S++RP P +P +C ++ +KL P+ ++CCY+ P R HP D VLT + TI TR+VTW A P+ P +QP Sbjct: 89 FGGDFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLSKTDRLWAEAMHLACEAINHTACSPNSDSKSPYEMWHGE-ASHARPYPFLKPAYCRWQRPSKLLPRGEACCYVGPSRDHPRDCHRVLTRVGTIQETRNVTW---EALPSQLPPLQP 257
BLAST of mRNA_H-paniculata_contig11506.973.1 vs. uniprot
Match: A0A6H5K293_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K293_9PHAE) HSP 1 Score: 105 bits (261), Expect = 1.650e-19 Identity = 65/175 (37.14%), Postives = 91/175 (52.00%), Query Frame = 1 Query: 856 QQQFFFGREFDKFCKGHSVPVNLLP-QLPKCNGVGERGLTALEAAELAATVQARVLFPSSYIPKGKSLWAEVFNWGCGALNYTATGSNLGERSPYQVWYGHPSSY-SRPPLFEPGHCGVKQSNKLAPKAQSCCYLRPRRKHPNDSMCVLTGLHTIVATRDVTWAYVRAPPAYSPS 1374 Q QF G +F + C+ H + P PK NGV ER L + A LA+ +QA LFP + P LWAE + C LN TAT SN G++S Y++++ P S P +P ++ K PK + YL P HP D + +LT T++ TR+ TW +V PA SP+ Sbjct: 97 QGQFAEG-QFAEVCRRHGIKQEFTPPNTPKYNGVAERALGLITDAALASRIQATQLFPDA--PNHPRLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDPPPPVGSTSPFLKPAVFKSRRKAKSQPKGEKGWYLGPAHNHPRDCVRMLTEAGTVITTRNFTWRHV---PAASPA 265
BLAST of mRNA_H-paniculata_contig11506.973.1 vs. uniprot
Match: A0A6H5JV95_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV95_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 2.160e-16 Identity = 58/170 (34.12%), Postives = 84/170 (49.41%), Query Frame = 1 Query: 871 FGREFDKFCKGHSVPVNLLP-QLPKCNGVGERGLTALEAAELAATVQARVLFPSSYIPKGKSLWAEVFNWGCGALNYTATGSNLGERSPYQVWYGHPSSY-SRPPLFEPGHCGVKQSNKLAPKAQSCCYLRPRRKHPNDSMCVLTGLHTIVATRDVTWAYVRAPPAYSPS 1374 F +F + C+ H + PK NG ER L + A LA+ +QA LFP + G LWAE + C LN TAT SN G++S Y++++ P S P +P ++ K K + YL P HP D + +LT T++ TR+ TW +V P SP+ Sbjct: 97 FQGQFAEVCRRHGIKQEFTSLHTPKYNGAAERALGLITGAALASRIQATQLFPDAQNHPG--LWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVRSTYPFLKPAVFKSRRKAKSQIKGEKGWYLGPAYNHPRDCVRMLTEAGTVIITRNFTWRHV---PTASPA 261
BLAST of mRNA_H-paniculata_contig11506.973.1 vs. uniprot
Match: A0A6H5KX24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX24_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 2.710e-16 Identity = 67/225 (29.78%), Postives = 106/225 (47.11%), Query Frame = 2 Query: 1592 DSLMERFEINAASELSTASLGCLGPSRGDEEGGAWPFRAAVGCLVWLAMMTRLYIANSERDLAGHSHITCSRHWTAVLEIVSYLNGDRFSRVELDSSA---IAHFASSVWTGI----SLSVVAVMLRGRVVSFSSSTQHWLVCE-------------------RCALLLVT-ETVRYAH*VV*GYCRATVFSRNPRISRRNRHTDMKYHFIGGLVRTGKVSVYHV 2185 D +++RF++ + S + + L P R DE+GG WP R A+G ++W++ +R ++ + R +A H+H RHW A+ +I+ YL G R + + +A + + + S+S +A + G VVS S TQ L R L V ET + V+ A +NP S R +HTDM +HFI GL R+G + V V Sbjct: 876 DGMVKRFDVQSTSRIPASPGVDLRPKRDDEKGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSILSLSSTEVEYVAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHTDMIFHFIRGLFRSGDIPVKFV 1100
BLAST of mRNA_H-paniculata_contig11506.973.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 1.750e-14 Identity = 56/158 (35.44%), Postives = 79/158 (50.00%), Query Frame = 1 Query: 871 FGREFDKFCKGHSVPVNLLP-QLPKCNGVGERGLTALEA---AELAATVQARVLFPSSYIPKGKSLWAEVFNWGCGALNYTATGSNLGERSPYQVWYGHPSSY-SRPPLFEPGHCGVKQSNKLAPKAQSCCYLRPRRKHPNDSMCVLTGLHTIVATRD 1329 F +F + C+ H + P PK NGV ER L AL A LA+ +QA LFP + P LWAE + C LN TAT SN G++S Y++++ P S P +P ++ K PK + Y+ P HP + +LT T+V TR+ Sbjct: 720 FQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDA--PNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPFLKPAMLKSRRKAKSQPKGEKGWYVGPAHNHPRYCVVMLTEAGTVVITRN 875
BLAST of mRNA_H-paniculata_contig11506.973.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 1.790e-14 Identity = 51/139 (36.69%), Postives = 71/139 (51.08%), Query Frame = 1 Query: 871 FGREFDKFCKGHSVPVNLLP-QLPKCNGVGERGLTALEAAELAATVQARVLFPSSYIPKGKSLWAEVFNWGCGALNYTATGSNLGERSPYQVWYGHPSSY-SRPPLFEPGHCGVKQSNKLAPKAQSCCYLRPRRKHPND 1281 F +F + C+ H + P PK NGV ER L + A LA+ +QA LFP + P LWAE + C LN TAT SN G++S Y++++ PS S P +P +++ K PK + YL P HP D Sbjct: 775 FQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDA--PNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHNSPSPVGSTYPFLKPAMFKLRRKAKSQPKGEKGWYLGPAHNHPRD 911
BLAST of mRNA_H-paniculata_contig11506.973.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 2.300e-13 Identity = 49/147 (33.33%), Postives = 73/147 (49.66%), Query Frame = 1 Query: 871 FGREFDKFCKGHSVPVNLLP-QLPKCNGVGERGLTALEAAELAATVQARVLFPSSYIPKGKSLWAEVFNWGCGALNYTATGSNLGERSPYQVWYGHPSSY-SRPPLFEPGHCGVKQSNKLAPKAQSCCYLRPRRKHPNDSMCVLTGL 1305 F +F + C+ H + P PK NGV ER L + A LA+ +QA LFP + P LWAE + C LN TAT SN G++S Y++++ P S P +P ++ K PK + YL P HP + + + + + Sbjct: 96 FQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDA--PNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMFHDSPPPVGSTYPFLKPAVFKSRRKAKSQPKGEKGWYLGPAHNHPRECLSMTSPI 240 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11506.973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11506.973.1 >prot_H-paniculata_contig11506.973.1 ID=prot_H-paniculata_contig11506.973.1|Name=mRNA_H-paniculata_contig11506.973.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp MERFEINAASELSTASLGCLGPSRGDEEGGAWPFRAAVGCLVWLAMMTRLback to top mRNA from alignment at H-paniculata_contig11506:88..2958- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11506.973.1 ID=mRNA_H-paniculata_contig11506.973.1|Name=mRNA_H-paniculata_contig11506.973.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2871bp|location=Sequence derived from alignment at H-paniculata_contig11506:88..2958- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11506:88..2958- >mRNA_H-paniculata_contig11506.973.1 ID=mRNA_H-paniculata_contig11506.973.1|Name=mRNA_H-paniculata_contig11506.973.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig11506:88..2958- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |