mRNA_H-paniculata_contig11488.960.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11488.960.1
Unique NamemRNA_H-paniculata_contig11488.960.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11488.960.1 vs. uniprot
Match: D7G5U6_ECTSI (FGGY_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U6_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 2.950e-23
Identity = 55/90 (61.11%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:  172 SKFLQILADVFQAPVYIAKASDSAAVGAALRAKHGLECRRQGVDYVPFKDTFGSGEYLGEPTAWPRTEAADVYSRLVERYDALEQRVMAM 441
            ++ LQ+LADVFQAPV+ A ASDSAAVGAALRAKHG+E  R+GV YVPF + +G  + +GEP A P  +A + Y  +V+R DALEQRVM+M
Sbjct:  504 AELLQVLADVFQAPVFTAAASDSAAVGAALRAKHGVEGLRRGVPYVPFAEVYGESD-MGEPAAVPSPDAGEAYGGMVDRMDALEQRVMSM 592
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BLAST of mRNA_H-paniculata_contig11488.960.1 vs. uniprot
Match: A0A813D3V9_9DINO (Xylb protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813D3V9_9DINO)

HSP 1 Score: 61.6 bits (148), Expect = 6.130e-8
Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:  181 LQILADVFQAPVYIAKASDSAAVGAALRAKHGLECRRQGVDYVPFKDTFGSGEYLGEPTAWPRTEAADVYSRLVERYDALEQRVMA 438
            LQ+LADVF  PV+    SDSA++GAALRA HGL C      ++ F      G    +  A P   A +VY++L+ R+  L+++V++
Sbjct:  154 LQVLADVFGVPVFTLDQSDSASLGAALRAGHGLRCLSSEGGFLSFAKFLSGGSIDYKLAAQPAAGAKEVYTQLLPRFLKLQEKVLS 239
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BLAST of mRNA_H-paniculata_contig11488.960.1 vs. uniprot
Match: A0A3R7K2X8_9STRA (FGGY_C domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K2X8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 7.250e-8
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:  181 LQILADVFQAPVY-IAKASDSAAVGAALRAKHGLECRRQGVDYVPFKDTFGSGEYLGEPTAWPRTEAADVYSRLVERYDALEQRVMAM 441
            LQILA +F APVY +  AS+SAA+G A RA+HG  C      YVPF D  GS ++    T  P  E A +Y+ ++ R++ LE + +++
Sbjct:  434 LQILASIFNAPVYRLTCASNSAALGGAFRARHGFACAGSVSGYVPF-DVSGSLDFTLSAT--PNEEDAKIYTEVIPRFETLEDQAVSL 518
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BLAST of mRNA_H-paniculata_contig11488.960.1 vs. uniprot
Match: A0A812I2R3_9DINO (XK2 protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812I2R3_9DINO)

HSP 1 Score: 62.0 bits (149), Expect = 1.000e-7
Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:  181 LQILADVFQAPVYIAKASDSAAVGAALRAKHGLECRRQGVDYVPFKDTFGSGEYLGEPTAWPRTEAADVYSRLVERYDALEQRVMA 438
            LQ+LADVF  PV+    SDSA++GAALRA HGL C      ++ F      G    +  A P   A +VY++L+ R+  L+++V++
Sbjct:  455 LQVLADVFGVPVFTLDQSDSASLGAALRAGHGLRCLSSEGGFLSFAKFLAGGSIDYKLAAQPAAGAKEVYTKLLPRFLKLQEKVLS 540
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BLAST of mRNA_H-paniculata_contig11488.960.1 vs. uniprot
Match: A0A1Q9DP48_SYMMI (Xylulose kinase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DP48_SYMMI)

HSP 1 Score: 61.6 bits (148), Expect = 1.570e-7
Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:  181 LQILADVFQAPVYIAKASDSAAVGAALRAKHGLECRRQGVDYVPFKDTFGSGEYLGEPTAWPRTEAADVYSRLVERYDALEQRVMA 438
            LQ+LADVF  PV+    SDSA++GAALRA HGL C      ++ F      G    +  A P   A +VY++L+ R+  L+++V++
Sbjct:  455 LQVLADVFGVPVFTLDQSDSASLGAALRAGHGLRCLSSEGGFLSFAKFLSGGSIDYKLAAQPAAGAKEVYTQLLPRFLKLQEKVLS 540
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BLAST of mRNA_H-paniculata_contig11488.960.1 vs. uniprot
Match: UPI000C6D6D75 (xylulose kinase-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6D6D75)

HSP 1 Score: 58.2 bits (139), Expect = 3.000e-7
Identity = 33/85 (38.82%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:  181 LQILADVFQAPVYIAKASDSAAVGAALRAKHGLECRRQGVDYVPFKDTFGSGEYLGEPTAWPRTEAADVYSRLVERYDALEQRVM 435
            +Q+LADVF  PVY+ + S+SA +G+A RAKHGL      +    F +T   G    +  A P  +AA++Y  + ERY  LE+ ++
Sbjct:   75 IQVLADVFNTPVYVQEISNSACLGSAYRAKHGL------IGTKSFDETVEIGPEF-QLAAKPMKDAAEIYDAMAERYKLLEEMIL 152
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BLAST of mRNA_H-paniculata_contig11488.960.1 vs. uniprot
Match: A0A662Y5M5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5M5_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.350e-7
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:  181 LQILADVFQAPVY-IAKASDSAAVGAALRAKHGLECRRQGVDYVPFKDTFGSGEYLGEPTAWPRTEAADVYSRLVERYDALEQRVMAM 441
            LQ+LADVF APVY +  AS+SAA+G A RA+HG  C      YVPF  T      L   +A    E A VY+R + R+++LE + +++
Sbjct:  471 LQVLADVFDAPVYRLTCASNSAALGGAFRARHGYACASSASGYVPFDVTESLDFSL---SATSNGEDAKVYTRELPRFESLEDQAVSL 555
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BLAST of mRNA_H-paniculata_contig11488.960.1 vs. uniprot
Match: A0A7M7MXT1_STRPU (Xylulose kinase n=4 Tax=Echinacea TaxID=7674 RepID=A0A7M7MXT1_STRPU)

HSP 1 Score: 59.7 bits (143), Expect = 6.030e-7
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 1 
Query:  181 LQILADVFQAPVYIAKASDSAAVGAALRAKHGLECRRQGVDYVPFKDTFGSGEYLGEPTAWPRTEAADVYSRLVERYDALEQRV 432
            LQ+++DVF APVY+   ++SA +G A RAKHG      G D V F +   +     +  A P T AA VY+ L+ERY  LE ++
Sbjct:  448 LQVISDVFNAPVYVLDVANSACLGCAYRAKHGW----LGGDKVSFHEVVKTASNYKQ-AATPNTHAAQVYNSLLERYKVLEDKI 526
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BLAST of mRNA_H-paniculata_contig11488.960.1 vs. uniprot
Match: A0A8J1Y9F9_OWEFU (Xylulose kinase n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1Y9F9_OWEFU)

HSP 1 Score: 59.7 bits (143), Expect = 6.040e-7
Identity = 37/85 (43.53%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:  181 LQILADVFQAPVYIAKASDSAAVGAALRAKHGLECRRQGVDYVPFKDTFGSGEYLGEPTAWPRTEAADVYSRLVERYDALEQRVM 435
            LQ+++DVF APVYI   ++SA +G A RAKHG      G + VPF D            A P  +A  VY+ LV RY ALE+R++
Sbjct:  448 LQVISDVFNAPVYIQDVANSACLGGAYRAKHGY----MGGETVPFSDVVKDAPDF-TCAAKPSQDADKVYTPLVARYKALEERIV 527
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BLAST of mRNA_H-paniculata_contig11488.960.1 vs. uniprot
Match: G1QAZ7_MYOLU (Xylulose kinase n=18 Tax=Vespertilionidae TaxID=9431 RepID=G1QAZ7_MYOLU)

HSP 1 Score: 59.7 bits (143), Expect = 6.110e-7
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:  181 LQILADVFQAPVYIAKASDSAAVGAALRAKHGLECRRQGVDYVPFKDT--FGSGEYLGEPTAWPRTEAADVYSRLVERYDALEQRVMA 438
            LQ+LADVF APVY+   ++SA VG+A RA HGL         VPF +   F  G  L    A P   AA VY+ L+ RY  LEQR+++
Sbjct:  464 LQVLADVFGAPVYVIDTANSACVGSAYRAFHGLAAGTG----VPFSEVVKFAPGPRLA---ATPSPGAAQVYAALLPRYAQLEQRILS 544
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11488.960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5U6_ECTSI2.950e-2361.11FGGY_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A813D3V9_9DINO6.130e-839.53Xylb protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A3R7K2X8_9STRA7.250e-842.05FGGY_C domain-containing protein n=3 Tax=Phytophth... [more]
A0A812I2R3_9DINO1.000e-739.53XK2 protein n=2 Tax=unclassified Symbiodinium TaxI... [more]
A0A1Q9DP48_SYMMI1.570e-739.53Xylulose kinase n=1 Tax=Symbiodinium microadriatic... [more]
UPI000C6D6D753.000e-738.82xylulose kinase-like n=1 Tax=Centruroides sculptur... [more]
A0A662Y5M5_9STRA3.350e-743.18Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A7M7MXT1_STRPU6.030e-741.67Xylulose kinase n=4 Tax=Echinacea TaxID=7674 RepID... [more]
A0A8J1Y9F9_OWEFU6.040e-743.53Xylulose kinase n=1 Tax=Owenia fusiformis TaxID=63... [more]
G1QAZ7_MYOLU6.110e-745.45Xylulose kinase n=18 Tax=Vespertilionidae TaxID=94... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11488contigH-paniculata_contig11488:2438..3740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue1.9e-21
Seed eggNOG ortholog2880.D7G5U6
Preferred nameXYLB
KEGG rclassRC00002,RC00538
KEGG koko:K00854,ko:K14288,ko:K16732
KEGG ReactionR01639
KEGG Pathwayko00040,ko01100,ko03013,map00040,map01100,map03013
KEGG ModuleM00014
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0003824,GO:0004856,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0005997,GO:0005998,GO:0006063,GO:0006064,GO:0006082,GO:0006091,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009987,GO:0016052,GO:0016054,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019200,GO:0019321,GO:0019323,GO:0019585,GO:0019637,GO:0019640,GO:0019752,GO:0031982,GO:0032787,GO:0043226,GO:0043227,GO:0043230,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044262,GO:0044281,GO:0044282,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0046395,GO:0046835,GO:0051167,GO:0070062,GO:0071704,GO:0072329,GO:0090407,GO:1901135,GO:1901137,GO:1901159,GO:1901575,GO:1901576,GO:1903561
EggNOG free text desc.xylulokinase activity
EggNOG OGsCOG1070@1,KOG2531@2759
EC2.7.1.17
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03036,ko04812
Exons2
Model size632
Cds size444
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11488.960.1prot_H-paniculata_contig11488.960.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11488 2438..3554 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928854.5162961-CDS-H-paniculata_contig11488:2437..27661622928854.5162961-CDS-H-paniculata_contig11488:2437..2766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11488 2438..2766 +
1691480646.18879-CDS-H-paniculata_contig11488:2437..27661691480646.18879-CDS-H-paniculata_contig11488:2437..2766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11488 2438..2766 +
1622928854.614006-CDS-H-paniculata_contig11488:3439..35541622928854.614006-CDS-H-paniculata_contig11488:3439..3554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11488 3440..3554 +
1691480646.1986933-CDS-H-paniculata_contig11488:3439..35541691480646.1986933-CDS-H-paniculata_contig11488:3439..3554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11488 3440..3554 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928854.630548-UTR-H-paniculata_contig11488:3554..37401622928854.630548-UTR-H-paniculata_contig11488:3554..3740Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11488 3555..3740 +
1691480646.205965-UTR-H-paniculata_contig11488:3554..37401691480646.205965-UTR-H-paniculata_contig11488:3554..3740Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11488 3555..3740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11488.960.1

>prot_H-paniculata_contig11488.960.1 ID=prot_H-paniculata_contig11488.960.1|Name=mRNA_H-paniculata_contig11488.960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
TLQVFDFVPALHVVLFYSRAATDAACLSIYLSVWLSVCLAIYLSVFPAVG
PRSPPLGSKFLQILADVFQAPVYIAKASDSAAVGAALRAKHGLECRRQGV
DYVPFKDTFGSGEYLGEPTAWPRTEAADVYSRLVERYDALEQRVMAM*
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mRNA from alignment at H-paniculata_contig11488:2438..3740+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11488.960.1 ID=mRNA_H-paniculata_contig11488.960.1|Name=mRNA_H-paniculata_contig11488.960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1303bp|location=Sequence derived from alignment at H-paniculata_contig11488:2438..3740+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGCTCCAAGTTTTCGATTTCGTCCCGGCGTTGCATGTTGTATTGTTTTA
TTCTCGTGCTGCCACCGATGCTGCCTGTCTGTCTATCTATCTGTCTGTCT
GGCTATCTGTCTGTCTGGCTATCTATCTGTCTGTCTTTCCTGCTGTTGGT
CCTCGTTCGCCCCCTCTCGGATCGAAGTTCTTACAAATTCTCGCGGATGT
GTTTCAAGCGCCCGTCTACATAGCTAAAGCGTCAGACTCTGCCGCGGTGG
GAGCTGCCCTGAGAGCCAAGCACGGCTTGGAGTGCCGCAGGCAGGGCGTC
GACTACGTCCCCTTCAAAGACACGTTCGGGTGCGACGTCCGTACTTCCTA
TGTTGATACATACCCTTAACCCTTGGTTGACTCCTGGGGGCTTGAGCTGT
GACATCTTGTAAGACAGGACTGTAAGATTTCGCGTGTCACAAGATGATGG
CTACATTGGTTTCGGAACAGATGAACGGCTTCATCGCGGGTGTAACATCA
TATCGGTCTGTCACAGACGTGTACTACGACATGTATGGTGCAGAGGAAGT
ACATTATGTAGGTTGGCATAGAATCTTGTGCAGAAATGAACAAACAAGTC
ACTTGTTTACGCAAAAACGAATTCCTTTTGCACATTTCGATTTGGTCTTG
AATAGCAAACAGTGAGTGAGGTCCTCGTCCCGGACCCCAGTCACTGTGCA
CTAACGTCTCGTCACAAGATGGATTCGTTGTCACATGCAGTGACAGTTCT
ATTCGTATCTTTCACGGAATGTACGAGCTTTGAAGAGAAATTCCTTTCGT
GGCGAGACGTGGGTACGGGTGAGCTGGGGTCCGGAGGGGGTCTGCGACGA
GCGCTCACGTTTTTGCTTTTTCGCGCGTATGTGTGTAGCAAGCTTTCCTT
ACCTACTTTTATCATTCAGTTATTCCTTTTTCGCTAGCTCACGGCCATTT
CTCGTGCTTTTTCGATTTTTTGTTCGTGTTTCGTCTTGTTTATGTTCAAT
AGGAGTGGTGAATATTTAGGGGAGCCCACGGCGTGGCCTAGAACAGAGGC
CGCGGATGTTTACTCGCGCTTGGTGGAGCGCTACGACGCACTGGAGCAAC
GGGTCATGGCGATGTAGCATGAGGACGACCTCACTGCCCCTCTCATCAAA
TATTTCGTTGGCGCTTCTGGTGCAGGAGCATGAGCATTAGTAGTTCCAGC
GTGAAGATTTGATATATACTCCCTCCGTCCCATAAGTCTGCGACGTTGAG
GGTGTAACGTCTTGCGATGACCTCTGAATTAAACACGTATTTTTGCCGGA
TTC
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Coding sequence (CDS) from alignment at H-paniculata_contig11488:2438..3740+

>mRNA_H-paniculata_contig11488.960.1 ID=mRNA_H-paniculata_contig11488.960.1|Name=mRNA_H-paniculata_contig11488.960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig11488:2438..3740+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGCTCCAAGTTTTCGATTTCGTCCCGGCGTTGCATGTTGTATTGTTTTA
TTCTCGTGCTGCCACCGATGCTGCCTGTCTGTCTATCTATCTGTCTGTCT
GGCTATCTGTCTGTCTGGCTATCTATCTGTCTGTCTTTCCTGCTGTTGGT
CCTCGTTCGCCCCCTCTCGGATCGAAGTTCTTACAAATTCTCGCGGATGT
GTTTCAAGCGCCCGTCTACATAGCTAAAGCGTCAGACTCTGCCGCGGTGG
GAGCTGCCCTGAGAGCCAAGCACGGCTTGGAGTGCCGCAGGCAGGGCGTC
GACTACGTCCCCTTCAAAGACACGTTCGGACGCTCCAAGTTTTCGATTTC
GTCCCGGCGTTGCATGTTGTATTGTTTTATTCTCGTGCTGCCACCGATGC
TGCCTGTCTGTCTATCTATCTGTCTGTCTGGCTATCTGTCTGTCTGGCTA
TCTATCTGTCTGTCTTTCCTGCTGTTGGTCCTCGTTCGCCCCCTCTCGGA
TCGAAGTTCTTACAAATTCTCGCGGATGTGTTTCAAGCGCCCGTCTACAT
AGCTAAAGCGTCAGACTCTGCCGCGGTGGGAGCTGCCCTGAGAGCCAAGC
ACGGCTTGGAGTGCCGCAGGCAGGGCGTCGACTACGTCCCCTTCAAAGAC
ACGTTCGGGAGTGGTGAATATTTAGGGGAGCCCACGGCGTGGCCTAGAAC
AGAGGCCGCGGATGTTTACTCGCGCTTGGTGGAGCGCTACGACGCACTGG
AGCAACGGGTCATGGCGATGTAGGAGTGGTGAATATTTAGGGGAGCCCAC
GGCGTGGCCTAGAACAGAGGCCGCGGATGTTTACTCGCGCTTGGTGGAGC
GCTACGACGCACTGGAGCAACGGGTCATGGCGATGTAG
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