mRNA_H-paniculata_contig11476.959.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11476.959.1
Unique NamemRNA_H-paniculata_contig11476.959.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11476.959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11476contigH-paniculata_contig11476:4026..5387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size826
Cds size459
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11476.959.1prot_H-paniculata_contig11476.959.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11476 4929..5387 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928854.4446652-UTR-H-paniculata_contig11476:4025..43171622928854.4446652-UTR-H-paniculata_contig11476:4025..4317Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11476 4026..4317 +
1691480646.1621654-UTR-H-paniculata_contig11476:4025..43171691480646.1621654-UTR-H-paniculata_contig11476:4025..4317Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11476 4026..4317 +
1622928854.4620109-UTR-H-paniculata_contig11476:4853..49281622928854.4620109-UTR-H-paniculata_contig11476:4853..4928Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11476 4854..4928 +
1691480646.1733508-UTR-H-paniculata_contig11476:4853..49281691480646.1733508-UTR-H-paniculata_contig11476:4853..4928Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11476 4854..4928 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928854.472041-CDS-H-paniculata_contig11476:4928..53871622928854.472041-CDS-H-paniculata_contig11476:4928..5387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11476 4929..5387 +
1691480646.1805484-CDS-H-paniculata_contig11476:4928..53871691480646.1805484-CDS-H-paniculata_contig11476:4928..5387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11476 4929..5387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11476.959.1

>prot_H-paniculata_contig11476.959.1 ID=prot_H-paniculata_contig11476.959.1|Name=mRNA_H-paniculata_contig11476.959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
MGSQRRIVSPAVAVIGDKETVTPAPPPPGDQEQAKGIGNKDNVLSQRSES
VQIFGGGGGGGGGSSYAAGFNINADVDDSQGHRADDDTVAVGRDDDSTDF
DAASAKWSDTASYTSDSSGHTTSGGGSGGGGGVDGDHIELGSERENDRVD
RER
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mRNA from alignment at H-paniculata_contig11476:4026..5387+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11476.959.1 ID=mRNA_H-paniculata_contig11476.959.1|Name=mRNA_H-paniculata_contig11476.959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig11476:4026..5387+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCCTGCTGCGGGGCTGGGGGAACGAGAGACGTAGTTGTGGTAAGCCGT
GAAAAATTCAAGTCGTGGAGTCTACAAAAAATCGTCCCTCGCTTTGTATC
TGTAAGCGTGTGCTTGGTCTTGTCTGCAAAGGCAGACACTGGGCGCCCTC
TGGATTAGTATTCATTTGGTGTTGTTGTTCGAGTACGTGTCTACGTTTGG
GCGGCTTAGCCAACGAACGGGCTAACCCCCATATGGGCTAATTTCAATGA
TGATCCTGTCCTGATGCATGAACTTCAGGATTATTGAATGAGGTGAGCAC
CAAGTTCGATCCTAGGGAGAATCACACATATTTTGTATACAATTGCCGGT
GCTGTAGAGTAATAGGCAGAAACAAGGGCAAATCATGGAACATTCGAACA
CTTTGAAACCAAAAAAGGACCCAAGCTCTTCGCCCTGCAGAGCAGGCATC
CATACTCTTCATACAGCATACGCTTACTGCATTTCGGCCAGCACTCCTAT
TGCAGCGTGTACCGTGGCGTGATTCCTTCAAACGCAGCGCCACTAAATCA
TCAGGGTCATCAACATCGGGGCTTCTCCTTCAGCATACACGTATTTAGGA
GACACTCGTCAATGAAATGTAAATACGTCATGTTCCCCACCGTCAGATTA
TGAGTTACGAGTATCAACCAGACTATTCCCCTCGCTGGATCTATCTCCGC
GTCCCCGGCCTGCCCTTGGGTAACTTAGCCTCCAGCGCTATCTCGCCAGC
ACGCTCACAGCTCTGAACCGTCTCTCCGCCTGTGTGTGCTGGCTATAACT
CCAATCCCCGTGTGTGCCGGCAGCGCAGTTATTATTCCTACGACAACTTG
TGGGCCTGTCAGGATACCTCGAGTAATTGGGCGAGCTGGTTGTCTTGCTG
GCCATGGGATCGCAAAGACGAATAGTAAGCCCCGCCGTGGCGGTTATCGG
CGATAAGGAAACCGTCACACCAGCACCACCACCGCCCGGAGATCAAGAAC
AGGCGAAAGGAATAGGAAATAAAGACAACGTTCTATCCCAACGATCAGAA
TCAGTTCAAATTTTCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAGTTA
CGCTGCCGGTTTTAACATCAACGCTGACGTTGATGATAGTCAGGGTCACC
GTGCCGACGATGATACCGTGGCCGTTGGTCGCGATGATGACAGTACTGAC
TTCGACGCGGCCTCCGCAAAGTGGAGTGACACGGCAAGCTACACAAGCGA
TAGTAGTGGGCATACAACAAGCGGCGGCGGTAGTGGCGGCGGCGGTGGCG
TTGATGGCGACCATATTGAACTTGGCAGCGAACGTGAAAACGACCGCGTG
GACAGAGAGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11476:4026..5387+

>mRNA_H-paniculata_contig11476.959.1 ID=mRNA_H-paniculata_contig11476.959.1|Name=mRNA_H-paniculata_contig11476.959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig11476:4026..5387+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGATCGCAAAGACGAATAGTAAGCCCCGCCGTGGCGGTTATCGGCGA
TAAGGAAACCGTCACACCAGCACCACCACCGCCCGGAGATCAAGAACAGG
CGAAAGGAATAGGAAATAAAGACAACGTTCTATCCCAACGATCAGAATCA
GTTCAAATTTTCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAGTTACGC
TGCCGGTTTTAACATCAACGCTGACGTTGATGATAGTCAGGGTCACCGTG
CCGACGATGATACCGTGGCCGTTGGTCGCGATGATGACAGTACTGACTTC
GACGCGGCCTCCGCAAAGTGGAGTGACACGGCAAGCTACACAAGCGATAG
TAGTGGGCATACAACAAGCGGCGGCGGTAGTGGCGGCGGCGGTGGCGTTG
ATGGCGACCATATTGAACTTGGCAGCGAACGTGAAAACGACCGCGTGGAC
AGAGAGAGGATGGGATCGCAAAGACGAATAGTAAGCCCCGCCGTGGCGGT
TATCGGCGATAAGGAAACCGTCACACCAGCACCACCACCGCCCGGAGATC
AAGAACAGGCGAAAGGAATAGGAAATAAAGACAACGTTCTATCCCAACGA
TCAGAATCAGTTCAAATTTTCGGCGGCGGCGGCGGCGGCGGCGGCGGCAG
CAGTTACGCTGCCGGTTTTAACATCAACGCTGACGTTGATGATAGTCAGG
GTCACCGTGCCGACGATGATACCGTGGCCGTTGGTCGCGATGATGACAGT
ACTGACTTCGACGCGGCCTCCGCAAAGTGGAGTGACACGGCAAGCTACAC
AAGCGATAGTAGTGGGCATACAACAAGCGGCGGCGGTAGTGGCGGCGGCG
GTGGCGTTGATGGCGACCATATTGAACTTGGCAGCGAACGTGAAAACGAC
CGCGTGGACAGAGAGAGG
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