mRNA_H-paniculata_contig11472.956.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig11472.956.1 vs. uniprot
Match: D8LFZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFZ2_ECTSI) HSP 1 Score: 528 bits (1359), Expect = 2.490e-167 Identity = 409/759 (53.89%), Postives = 450/759 (59.29%), Query Frame = 3
Query: 1140 NVPASSLSVVSPTSSRSEEKAFQHQLSPQSSRHVMPSVARVAHXXXXXXXXXXXXXVQSSGGS---GRFGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPPAVQLACDRIVTTIYTAADTSLDITQRVLIPDAASGLIIGHDGGRLGDLRQEAGVASIQVSPRDMCTVAGERVVTLQGPMSAVIYGLSLIVNRMMEDTTLSRYQNMSTIYRAVHLHLPPYAVPGGGNMHDQQHG--HAGGSPARHP-HARLSPSYVGT--HSHAQEFHGHNAVAVPRGPSREYAGKSHTGGSS-WEYGYMSGSSS-REFSGHVGXXXXXXXXXXXXXXXXXX--AANSLAPSNGG--SHDMGSSMHPA-------HFSGGRHLRH--------TPSPNEFNDGVEGEFVGAGRGXXXXXXXXXXADLAGVMDECGRRLSRVREYDSP-PHCRGDY-SSRDGY---------------DHVRQNKTPPY-----GRSAPAFCGRGGYHGEGQVDANAFHPLQQXXXXXXXXXXXXXXXXXXHVGRPAVSEFSLQGTSGVSGL----LPHEVHSTAAAVAHRSMHDAGHGHIGMGSPPAPVGGDLRRVAVTGGGHGHGDAGLAAMFEGLNLHSPPGIAPQQVGS-----QQQLXXXXXXXXXXXXGVIMHGELPVPDADVGIILGKGGATVRELQQLSGAKIMIARRNEFMPGTKHRLVTLAGPPMSVNMARFLIMRKIQTEKEKL 3236
N SSLSVVSPTSS SEE AFQ QLS + + +R A ++ GS GRFGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEP +VQ+ACDRIVTTIYTAADTSLDITQRVLIPDAASGLIIGHDG RLGDLRQ+AGVASIQVSPRDMCTVAGERVVTLQGPMS+VI+GL+LIV+RMMEDTT SRYQNMSTIYRAVHLHLPPYAVPG M Q H G+ RHP H RLSPSY G HSH ++H VA R +R GK+ +G ++ WE GY G+ + RE + H G XXXXXXXX + L+ G SH S PA HF GGRH R P +F D E + RG AG +D RL REYDSP P G SR+GY DH+RQ GR G Y + PLQ+ XXXXXXXXXXX GL LP HG +GL+ MFEG+NL+SPPG+AP S Q+Q XXXXXXXXXX G I+HGELPVPDADVGIILGKGGATVRELQQLSGAKIMIARRNEFMPGTKHRLVTLAG P++VNMARFLIMRKIQTEKEKL
Sbjct: 6 NTGTSSLSVVSPTSSHSEEVAFQQQLS-------LEAESRAAAAAPPLSARPSGVVASNNNGSPSGGRFGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPGSVQMACDRIVTTIYTAADTSLDITQRVLIPDAASGLIIGHDGVRLGDLRQQAGVASIQVSPRDMCTVAGERVVTLQGPMSSVIHGLTLIVDRMMEDTTASRYQNMSTIYRAVHLHLPPYAVPG---MQQQXXXXXHDNGASPRHPNHPRLSPSYRGPSPHSHHDDYHSPGGVAGSRTGNRGDYGKAVSGAAAHWELGYGGGNHTPRELAPHGGGXXXXXXXXGEYVHRNMSMPTVHPLSAPLGSPLSHQHRSHTAPAAVTGSSQHF-GGRHPRQEHGAGSAGAAGPRDF-DFSERDTSKVHRGGG-----------AGPIDLDDYRL---REYDSPSPADLGSRPGSREGYVHHSPHLPGPSPRDLDHMRQXXXXXXXXXDGGRGFSRVGGSSPYPPGSAASQSDLWPLQRVRQXXXXXXXXXXXILVHEARXXXXXXXXXXXXXXXXGLHDGGLPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-SHGCDASGLSGMFEGMNLNSPPGLAPPPTCSPGSLQQKQXXXXXXXXXXXGAGCIVHGELPVPDADVGIILGKGGATVRELQQLSGAKIMIARRNEFMPGTKHRLVTLAGAPLAVNMARFLIMRKIQTEKEKL 737
BLAST of mRNA_H-paniculata_contig11472.956.1 vs. uniprot
Match: D8LGY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY3_ECTSI) HSP 1 Score: 102 bits (253), Expect = 9.000e-20 Identity = 61/181 (33.70%), Postives = 102/181 (56.35%), Query Frame = 3
Query: 1341 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPPAVQLACDRIVTTIYTAADT--------------SLDITQRVLIPDAASGLIIGHDGGRLGDLRQEAGVASIQVSPRDMCTVAGERVVTLQGPMSAVIYGLSLIVNRMMEDTTLSRYQNMSTIYRA 1841
+K LV N AG+LIGK G I +I+ + + + +G +YPGT ER VLV GE V+ AC I+ T++ + ++++TQR+LIP A GL+IG G + L +G A + + + V ER+VT+QG +++ + ++V++++E+ LSR+ N+S YR+
Sbjct: 87 IKFLVPNFQAGSLIGKKGATIKDIQLKASCMVGIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLHVPDNNESGCAKLVSQEKAEAIEVTQRLLIPLTAGGLVIGRRGANIAALLAASG-AKVTLGQKADVKVH-ERLVTVQGKLTSATKAVEMLVDKLVEEPVLSRFANLSVNYRS 265
BLAST of mRNA_H-paniculata_contig11472.956.1 vs. uniprot
Match: A0A1E7FL20_9STRA (KH_1-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FL20_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.110e-19 Identity = 78/241 (32.37%), Postives = 119/241 (49.38%), Query Frame = 3
Query: 1341 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPPAVQLACDRIVTTIYTAAD--------------------TSLDITQRVLIPDAASGLIIGHDGGRLGDLRQEAGVASIQVSPRD----------MCTVAG----ERVVTLQGPMS-AVIYGLSLIVNRMMEDTTLSRYQNMSTIYRAVHLHLPPYAVPGGGNMHDQQHGHAGGSPARHPHARLSPS 1958
+KLLVSN++AG++IG+ G I E++ + A IK++ G +YPGT +RV LV G+ V+LA ++ Y + T D R+L+P ++ G+IIG G + + + +GV+S+++SP+D AG ERVVTL GP + L ++++ M + +SRY NM+T Y HL VPG QQ P R PH SP+
Sbjct: 35 IKLLVSNNVAGSIIGRAGQTISELQTQSSARIKLSQTGDYYPGTQDRVCLVQGQLSTVKLAVQLLLERFYMLQEQQHTQYLAWQPKNDEHAPTPTGFDFVVRLLVPSSSCGMIIGKAGANIKHMEESSGVSSVRLSPKDGPDQPQAQQHQTRPAGPGTQERVVTLTGPSKESCTKCLFIVIDGMFANHEISRYTNMTTSYSR---HL----VPGTYTPAPQQ------QPGRPPHMGPSPT 262
BLAST of mRNA_H-paniculata_contig11472.956.1 vs. uniprot
Match: A0A836CIW2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIW2_9STRA) HSP 1 Score: 103 bits (256), Expect = 1.440e-19 Identity = 64/182 (35.16%), Postives = 105/182 (57.69%), Query Frame = 3
Query: 1341 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPPAVQLACDRIVTTIY-----------------TAADTSLDITQRVLIPDAASGLIIGHDGGRLGDLRQEAGVASIQVSPRDMCTVAGERVVTLQGPMSAVIYGLSLIVNRMMEDTTLSRYQNMSTIY 1835
LKLLVSN+MAG+LIGK G I ++ + A +KV+ +G + PGT +RVVLV G+ P V+ AC ++ T++ T D +L++TQR+LIP +A GL+IG G + L + +G A + +S + + + ERVVT+ G + A + ++++ + + + Y N+S Y
Sbjct: 50 LKLLVSNNMAGSLIGKAGQTIQNVQLQSGAVVKVSTSGMYLPGTQDRVVLVTGDLPRVKAACALVLHTVHEQGRDRDCGVPAPLDIGTERD-ALEVTQRLLIPASAGGLVIGRGGSNIKGLSESSG-ARVSLSQKQT-SPSSERVVTIGGSLGACRLCIDMLLDTLKREPAAAVYTNLSVNY 228
BLAST of mRNA_H-paniculata_contig11472.956.1 vs. uniprot
Match: A0A7S0W657_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W657_9CRYP) HSP 1 Score: 97.8 bits (242), Expect = 8.890e-19 Identity = 61/179 (34.08%), Postives = 106/179 (59.22%), Query Frame = 3
Query: 1335 FGLKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPPAVQLACDRIVTTIYTAADT---------SLDITQRVLIPDAASGLIIGHDGGRLGDLRQEAGVASIQVSPRDMCTVAG--ERVVTLQGPMSAVIYGLSLIVNRMMEDTTLSRYQNMSTIYR 1838
F +KLLV N AGT+IG+GG I ++ + + I+V+ ++P T +RVVL+ GE V ++ ++ A++ IT ++LIP+ A+G +IG G + +++E+G A IQ++ ++ V G ER++T+QGP+SA++ G +V+R+ ED T+ + N +T YR
Sbjct: 68 FAMKLLVGNKDAGTVIGRGGQTISSMQAKTGSRIRVSNANEYFPNTQDRVVLITGEVRNVADGVKNVLEEVFCNAESLQNEAASGEERQITLKMLIPNGAAGSVIGKGGECIKRMQEESG-AKIQLTTKEQ-QVPGVDERILTVQGPVSAIVKGAEQVVHRISEDPTVG-FTNHTTSYR 243
BLAST of mRNA_H-paniculata_contig11472.956.1 vs. uniprot
Match: A0A6H5KLG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG6_9PHAE) HSP 1 Score: 103 bits (256), Expect = 1.450e-18 Identity = 61/180 (33.89%), Postives = 102/180 (56.67%), Query Frame = 3
Query: 1341 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPPAVQLACDRIVTTIYTAADT--------------SLDITQRVLIPDAASGLIIGHDGGRLGDLRQEAGVASIQVSPRDMCTVAGERVVTLQGPMSAVIYGLSLIVNRMMEDTTLSRYQNMSTIYR 1838
+K LV N AG+LIGK G I +I+ + +++ +G +YPGT ER VLV GE V+ AC I+ T++ + ++++TQR+LIP A GL+IG G + L +G A + + + V ER+VT+QG +++ + ++V++++E+ LSR+ N+S YR
Sbjct: 91 IKFLVPNFQAGSLIGKKGATIKDIQLKASCMVRIATSGMYYPGTMERAVLVAGETEGVKQACGLILHTLHVPDNNESGCAKLVSEEKAEAIEVTQRLLIPLTAGGLVIGRRGANIAALLAASG-AKVTLGQKADVKVH-ERLVTVQGKLTSATKAVEMLVDKLVEEPVLSRFANLSVNYR 268
BLAST of mRNA_H-paniculata_contig11472.956.1 vs. uniprot
Match: A0A6P8IIV0_ACTTE (RNA-binding protein Nova-1-like isoform X1 n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IIV0_ACTTE) HSP 1 Score: 97.8 bits (242), Expect = 1.130e-17 Identity = 56/163 (34.36%), Postives = 93/163 (57.06%), Query Frame = 3
Query: 1341 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPPAVQLACDRIVTTIYT---AADTSLDIT--------QRVLIPDAASGLIIGHDGGRLGDLRQEAGVASIQVSPRDMCTVAGERVVTLQGPMSAVIYGLSLIVNRMMED 1796
LK+LV N AG++IGKGG I +++ A IK++PN +YPGT ER+ L++GE + D ++ I A + +IT ++++P++ +G+IIG G + + ++ G A IQ+S +D +VAGERVV + G V ++I ++ ED
Sbjct: 53 LKILVPNYAAGSIIGKGGQNIAQVQQSTGARIKLSPNNHYYPGTQERIGLIIGEVDTIITMLDFVIDKIRQEPQGAKVNSNITFDRERAKQMKIVVPNSTAGMIIGKGGTAIKSISEQTG-ARIQISQKDADSVAGERVVCVSGEEDQVQAACAIITAKVQED 214
BLAST of mRNA_H-paniculata_contig11472.956.1 vs. uniprot
Match: UPI000A2A8354 (RNA-binding protein Nova-1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A8354) HSP 1 Score: 95.9 bits (237), Expect = 3.560e-17 Identity = 55/163 (33.74%), Postives = 89/163 (54.60%), Query Frame = 3
Query: 1341 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPPAVQLACDRIVTTIYTAA-----------DTSLDITQRVLIPDAASGLIIGHDGGRLGDLRQEAGVASIQVSPRDMCTVAGERVVTLQGPMSAVIYGLSLIVNRMMED 1796
LK+LV N AG++IGKGG I +++ A IK++PN +YPGT ER+ L++GE + + +V I DT ++++P++ +G+IIG G + ++ G A IQ+S +D +VAGER+V + G V S+I ++ ED
Sbjct: 22 LKVLVPNYAAGSIIGKGGQNIAQVQQSTGARIKLSPNNHYYPGTQERIGLIIGEVENIITMLNFVVDKIRQEPQQAKMNANIQFDTERAKQMKIVVPNSTAGMIIGKGGSAIKSYSEQTG-ARIQISQKDADSVAGERIVNVSGTEEQVQAACSIIAAKVQED 183
BLAST of mRNA_H-paniculata_contig11472.956.1 vs. uniprot
Match: UPI001C4D4C6E (protein BTR1-like isoform X1 n=6 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4D4C6E) HSP 1 Score: 95.1 bits (235), Expect = 4.380e-17 Identity = 56/188 (29.79%), Postives = 105/188 (55.85%), Query Frame = 3
Query: 1341 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPPAVQLACDRIVTTIYTAADTSLDITQR----VLIPDAASGLIIGHDGGRLGDLRQEAGVASIQVSPRDMCTVAGERVVTLQGPMSAVIYGLSLIVNRMMEDTTLSRYQNMSTIYRAVHLHLPPYAVPGGGNMH 1892
++LLVSN+MAG++IGKGG+ I + + + A I+++ N +PGT +R++L+ G V A + I+ I + + D+ R +++P+++ G IIG G + +E+ A I++SP+D + +R+VTL G ++ + LI+++++ED + N Y + + Y +P G H
Sbjct: 36 VRLLVSNAMAGSIIGKGGSTINDFQTQSAARIQLSRNHEIFPGTSDRIILISGTFDEVLKATELILEKILSEVEDGNDVEGRTKVKLIVPNSSCGAIIGKGGSTIKSFIEESR-AGIKISPQDDNSGLNDRLVTLAGSFEEQMHAIFLILSKLIEDPHYPQKVNSPFTYSGLPSNPVGYMIPSAGYNH 222
BLAST of mRNA_H-paniculata_contig11472.956.1 vs. uniprot
Match: A7SKT2_NEMVE (Predicted protein n=4 Tax=Nematostella vectensis TaxID=45351 RepID=A7SKT2_NEMVE) HSP 1 Score: 95.9 bits (237), Expect = 4.650e-17 Identity = 54/163 (33.13%), Postives = 93/163 (57.06%), Query Frame = 3
Query: 1341 LKLLVSNSMAGTLIGKGGTRICEIKDECLADIKVTPNGRFYPGTHERVVLVVGEPPAVQLACDRIVTTIYTAAD---TSLDIT--------QRVLIPDAASGLIIGHDGGRLGDLRQEAGVASIQVSPRDMCTVAGERVVTLQGPMSAVIYGLSLIVNRMMED 1796
LK+LV N AG++IGKGG I +++ A IK++PN ++YPGT ER+ L++GE + D ++ I S+ I+ ++++P++ +G+IIG G + + ++ G A IQ+S +D +VAGER+V + G V +I +++ ED
Sbjct: 48 LKILVPNYAAGSIIGKGGQNIAQVQQTTGARIKLSPNNQYYPGTQERIGLIMGEVENIVQMLDFVIDKIRQEPQGIKASMSISFDRERAKQMKIIVPNSTAGMIIGKAGSAIKSISEQTG-ARIQISQKDAESVAGERIVCVGGSQEQVTAACVIITSKVQED 209 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11472.956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11472.956.1 >prot_H-paniculata_contig11472.956.1 ID=prot_H-paniculata_contig11472.956.1|Name=mRNA_H-paniculata_contig11472.956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=666bp MPSVARVAHHHQQQQQQQQQQNVQSSGGSGRFGLKLLVSNSMAGTLIGKGback to top mRNA from alignment at H-paniculata_contig11472:1563..8177+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11472.956.1 ID=mRNA_H-paniculata_contig11472.956.1|Name=mRNA_H-paniculata_contig11472.956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6615bp|location=Sequence derived from alignment at H-paniculata_contig11472:1563..8177+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11472:1563..8177+ >mRNA_H-paniculata_contig11472.956.1 ID=mRNA_H-paniculata_contig11472.956.1|Name=mRNA_H-paniculata_contig11472.956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3996bp|location=Sequence derived from alignment at H-paniculata_contig11472:1563..8177+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |