mRNA_H-paniculata_contig11463.951.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11463.951.1
Unique NamemRNA_H-paniculata_contig11463.951.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11463.951.1 vs. uniprot
Match: D7FKL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL3_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.920e-8
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:    1 EKRETEGQAEIRASNRGHDALMVQRDLHAASGLEKELKRLHELDRWRRQGPGAADVNLAALRER 192
            E+ E E +A  RA  RG +A M  R+  AA  +E ELKRL ELDR  R   GAA+ NLAALRER
Sbjct:  242 EREEAEEEAGYRAEERGQEAFMRCRNQRAARVVEAELKRLSELDRQHRLRNGAAETNLAALRER 305
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11463.951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKL3_ECTSI1.920e-854.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11463contigH-paniculata_contig11463:580..1694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size193
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928853.3806348-CDS-H-paniculata_contig11463:580..7181622928853.3806348-CDS-H-paniculata_contig11463:580..718Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11463 581..718 -
1691480645.6196597-CDS-H-paniculata_contig11463:580..7181691480645.6196597-CDS-H-paniculata_contig11463:580..718Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11463 581..718 -
1622928853.3961637-CDS-H-paniculata_contig11463:1640..16941622928853.3961637-CDS-H-paniculata_contig11463:1640..1694Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11463 1641..1694 -
1691480645.6291146-CDS-H-paniculata_contig11463:1640..16941691480645.6291146-CDS-H-paniculata_contig11463:1640..1694Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11463 1641..1694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11463.951.1prot_H-paniculata_contig11463.951.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11463 581..1694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11463.951.1

>prot_H-paniculata_contig11463.951.1 ID=prot_H-paniculata_contig11463.951.1|Name=mRNA_H-paniculata_contig11463.951.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
EKRETEGQAEIRASNRGHDALMVQRDLHAASGLEKELKRLHELDRWRRQG
PGAADVNLAALRER
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mRNA from alignment at H-paniculata_contig11463:580..1694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11463.951.1 ID=mRNA_H-paniculata_contig11463.951.1|Name=mRNA_H-paniculata_contig11463.951.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1115bp|location=Sequence derived from alignment at H-paniculata_contig11463:580..1694- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAAAAGAGAAACAGAGGGCCAGGCCGAAATTCGCGCTTCCAACAGGGG
ACATGTGAGGGGGAAACGCACGAACTGTGGCGTTAGATGATGAGAGCTGG
ACTGCTCATGAGGGCCGCTTGCGGAGAGGATGCTTTCGCAATAAAATCAG
TAGGATTTTTGAGCAAAATGAATTCTTTTGGGATTTTTTTTCTATTTAGT
CGTGTGTAAAGCCAACGGTGAGTTCCTCGTCCCGGATCCCAGTCCACCGC
CACCAACATGTCGATACAAAACGAATTCCTTGAAAAAAGCCAGTGACTAT
TCGTATCTCTCGTGGAATATTCTAATTTTGATTAGGGACTTCCTTTCGTG
GAGAGACGCTGGTGTGCGTGATGTAGGGTAAGAGTGTCTGCGACGAGCAG
GTCACTGTATATGACCAAACCGAAATTTGGAAAAAGCAATTGGTTTTGTG
CAAACGCTCTAAATTTTGAAGATTTATAGCTCTTCATGGGCCCGCTGACG
GGGCAAGCTTTTTATTTCGGTTGCCGTTTGAATCCTCATCTAGGCGAGTA
TCATGAAACAGTAAAGTACTGTTGCTTCTTTAATGTTTATATAGGAAATT
GTACAAGGGGGCGACAAATTGAGAGCCCCACCTCGTGGGCCAGATTTCTT
TGAGGTTTTTGTTTTTGTACCAAAAAGTGATGGAGCCTCAACGTATATAT
ATATATATTTGGTGCCTTTTTGTCACCGGGTCCGCATTGTATTTTCGTTT
GTTTTGATGTTTAGCTCTACAAGGCTTTCTCCGTTATTAAAATCTGTCGT
CTCTATTTTGTGTCTTGTTCTTGATACGGACGTACAATAGAGCCGTTTTC
TTACTTTCAGATGAACAAAACGTTCCGGTCCAACCCCCAACAGGGGTATC
CTTGTGACCAAAGTGGGGTACCCCCCGTCCTCAACCCCAACCCCCCCCCC
CCAAAAAACCCCCCAAAAAAAAACAGGATGCTCTGATGGTGCAGAGGGAT
CTCCATGCGGCTTCGGGGTTAGAGAAGGAACTGAAGCGTTTACACGAGCT
CGACCGCTGGAGGCGACAGGGACCTGGAGCCGCCGACGTCAACCTCGCCG
CACTACGAGAACGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11463:580..1694-

>mRNA_H-paniculata_contig11463.951.1 ID=mRNA_H-paniculata_contig11463.951.1|Name=mRNA_H-paniculata_contig11463.951.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig11463:580..1694- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAAAAGAGAAACAGAGGGCCAGGCCGAAATTCGCGCTTCCAACAGGGG
ACATGAGAAAAGAGAAACAGAGGGCCAGGCCGAAATTCGCGCTTCCAACA
GGGGACATGATGCTCTGATGGTGCAGAGGGATCTCCATGCGGCTTCGGGG
TTAGAGAAGGAACTGAAGCGTTTACACGAGCTCGACCGCTGGAGGCGACA
GGGACCTGGAGCCGCCGACGTCAACCTCGCCGCACTACGAGAACGGGATG
CTCTGATGGTGCAGAGGGATCTCCATGCGGCTTCGGGGTTAGAGAAGGAA
CTGAAGCGTTTACACGAGCTCGACCGCTGGAGGCGACAGGGACCTGGAGC
CGCCGACGTCAACCTCGCCGCACTACGAGAACGG
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