prot_H-paniculata_contig100.9.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig100.9.1
Unique Nameprot_H-paniculata_contig100.9.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1258
Homology
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BLAST of mRNA_H-paniculata_contig100.9.1 vs. uniprot
Match: A0A6H5KVW8_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVW8_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 6.840e-93
Identity = 165/248 (66.53%), Postives = 195/248 (78.63%), Query Frame = 0 
Query:  718 GRDVGALNPTDSDAVVDTTQDPTDTIVTGFWRLFHGQEVHRPKAVLVIRHWALCALDRRSTRLMRKTVTMARALCINVGEILNDYSIYAMFHELLREAEAGQPVTPARNQPFEHRVEVPAYIQELSSNVAAVSMRMVVRGQSCFFHNEMCRKLFLSSEEANEMYSENKQDVWATCIHPEDHKTFFESLSLQLFHVPGHFSESTQILKCRDRVGVPFLALVHFRYEFQDGGNYAAFGLSMHPLPSSPYL 965
            GRD G  +P  +   VD    PT+ IV+GFW+LF    +HRPKAVLVIRHWALCALDRRST LMR+TV+MARAL INV EILNDYSIYAMFHELLREAEAG  + P       H+ E P YIQE+SS  AAVSMR+V+RGQS F HN++C +LFL++ EANEMY+ + QDVWATCIHP+DHK FF++LS+QLF  PGH SE  ++LKCRDR GV FLALVHFRYEF+D GN+AAFGLS+ PLP S Y+
Sbjct:  587 GRDSGGRSPGANGGSVD----PTEAIVSGFWKLFREHGIHRPKAVLVIRHWALCALDRRSTHLMRETVSMARALSINVAEILNDYSIYAMFHELLREAEAGNTIEPVPPAELGHQ-ETPQYIQEMSSVFAAVSMRVVLRGQSSFHHNDVCGRLFLTTHEANEMYACDNQDVWATCIHPDDHKAFFDNLSMQLFRTPGHQSEFKKVLKCRDRTGVVFLALVHFRYEFRDDGNFAAFGLSILPLPQSDYI 829
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BLAST of mRNA_H-paniculata_contig100.9.1 vs. uniprot
Match: D7FVP7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVP7_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 1.820e-78
Identity = 163/315 (51.75%), Postives = 196/315 (62.22%), Query Frame = 0 
Query:  734 DTTQDPTDTIVTGFWRLFHGQEVHRPKAVLVIRHWALCALDRRSTRLMRKTVTMARALCINVGEILNDYSIYAMFHELLREAEAGQPVTPARNQPFEHRVEVPAYIQELSSNVAAVSMRMVVRGQSCFFHNEMCRKLFLSSEEANEMYSENKQDVWATCIHPEDHKTFFESL---SLQLFHVPGHFSESTQI----------------------------------------------------LKCRDRVGVPFLALVHFRYEFQDGGNYAAFGLSMHPLPSSPYL-NIDAPRDVSVLHDNSH---AALPPPLP 989
            D + DPT+ IV+GFW+LF   EVHRPKAVLVIRHWALCALDRRST LMR+TV+MARAL INV EILNDYSIYAMFHELLREAEAG  + P       H+ E P YIQE+SS  AAVSMR+V+RGQS F HN++C +LFL+++EANEMY+ + QDVWATCIHP+DH+     L   +L     P    ES ++                                                    L+CRDR+GV FLALVHFRYEF+D GN+AAFGLS+ PLP S Y+ N++ P   S  H +S    AA PP  P
Sbjct:  550 DGSVDPTEAIVSGFWKLFREHEVHRPKAVLVIRHWALCALDRRSTHLMRETVSMARALSINVAEILNDYSIYAMFHELLREAEAGNTIEPVPPAELGHQ-ETPQYIQEMSSVFAAVSMRVVLRGQSSFHHNDVCGRLFLTTQEANEMYASDNQDVWATCIHPDDHQDLLRQLIDAALPYSWAPVRVQESVEVMQSAAVSHSERIRPLLVYPPYPAASAALRERTNALGVSTILFIVFLLRLPDHLQCRDRIGVVFLALVHFRYEFRDDGNFAAFGLSILPLPQSDYIQNVEQPLTASDGHGSSGGSTAASPPVQP 863
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig100.9.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVW8_9PHAE6.840e-9366.53Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7FVP7_ECTSI1.820e-7851.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001138Zn(2)-C6 fungal-type DNA-binding domainSMARTSM00066gal4_2coord: 197..240
e-value: 3.6E-5
score: 33.2
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPFAMPF00172Zn_cluscoord: 203..230
e-value: 2.5E-5
score: 24.3
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS00463ZN2_CY6_FUNGAL_1coord: 202..229
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS50048ZN2_CY6_FUNGAL_2coord: 202..231
score: 9.556
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilyGENE3D4.10.240.10coord: 200..258
e-value: 8.6E-6
score: 28.0
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilySUPERFAMILY57701Zn2/Cys6 DNA-binding domaincoord: 201..237

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig100contigH-paniculata_contig100:2302..8685 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig100.9.1mRNA_H-paniculata_contig100.9.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig100 2249..13128 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig100.9.1 ID=prot_H-paniculata_contig100.9.1|Name=mRNA_H-paniculata_contig100.9.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1258bp
MDPSSRHQRHQGRLSSGGSKRNNELSAQPQQQQRPGPSQQQIKACGRQTD
QNANHTASRQQRGYDAQPRRTLYVPPEAPVSPDRLGPKAIEDGNQGPSAA
AAAAAAAAAAPMTPIGNTTNYNSAGTGRPTIMNSSPYSQNHDQRQGAGAD
IKTAHDDSPNKGAGRGEAVGDDDSCDEEANGQGQQNAQFHMASGGGEANQ
RTCVNCRKSKVKCSRGSPCFRCTRLKLVCIAQTRGRGRPVASAKKPKLDP
SPAIDSLAPASGQAMSGAGQGVATARAGGTPTGPPSVDNKREPHHLPLPS
FMGGVLSGPTTPTTGRIDCGVETASRRGEEMNRGVAQAPLAPSHSHGPMT
GQHIGYRDADSGLQGGSNGTAPPQSEVGNAAKLAPLAPSLQHQHGSLEAP
DACRPVPHLKPSPSPSGGTLVSVPEPLPTGNSTATGSGSGGELYGMPPTR
VSAPPSHGSASVFSRQQHKQQIGERSASLWQGGPHVTGNGGDGPNNVNNS
SRRHSCSSPSSWEELKNTTGGSSSGSHAVATTSQRAGTGDTTAPAASTNT
PGRRPSFSSGGTGPSPSSTMDGRRNSILDAPGSGPGGGDQGSSSGELVYI
RDTTNGPTGRVGAGGMGGGRGISPLWPATMDDGKGGLLTRGVRPDSGREP
SGGGDGDSAGFREKTAKHSRWFVPAVDAQDGRSSAKANGGSGLPAFPVAD
GGGGGGGVSSTGERSDVGRDVGALNPTDSDAVVDTTQDPTDTIVTGFWRL
FHGQEVHRPKAVLVIRHWALCALDRRSTRLMRKTVTMARALCINVGEILN
DYSIYAMFHELLREAEAGQPVTPARNQPFEHRVEVPAYIQELSSNVAAVS
MRMVVRGQSCFFHNEMCRKLFLSSEEANEMYSENKQDVWATCIHPEDHKT
FFESLSLQLFHVPGHFSESTQILKCRDRVGVPFLALVHFRYEFQDGGNYA
AFGLSMHPLPSSPYLNIDAPRDVSVLHDNSHAALPPPLPMMAQMGAVAGG
VSGIISGGSGSGSLPGPGAGCVGGGGVLSVGGLGSGVSAAAPEGGIFQAD
LHTPSSVSASAPSSSSVLPPLDVVDGGRRRAATGGPASSSSLPSQQQQQQ
HQQQQSAAGGDLWPPSPSLSIPPPPFGNGGRNSSKDGDGSHNNNNNNNNS
NSSSNSNSNSSSSSNNSNSSSKIDHGWRKNITRLLDHRPGWGEAEESGRP
RLQARAESSIRLESLAPAAVAMAFVECPWDPGNTTEAEVVAAAADFVRTG
VGMGLGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
IPR036864Zn2-C6_fun-type_DNA-bd_sf