mRNA_H-paniculata_contig11457.947.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11457.947.1
Unique NamemRNA_H-paniculata_contig11457.947.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11457.947.1 vs. uniprot
Match: A0A6H5KES9_9PHAE (MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES9_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 8.570e-48
Identity = 72/96 (75.00%), Postives = 82/96 (85.42%), Query Frame = 3 
Query:    6 TCEGNPKNNMGEARMDIVDSEVGYLGYNDSESYGLTWKVRGFCTNGTNPEIFDTVNVYGNIYNSKIHNNYFGIYTYGHQQGDWRENQMYDNIQYGF 293
            TCEGN KN MGEARMDI  SE+GYLGY DSESYGLTWKVRGFC + +NPE+FD VNVYGN+Y+S IH+  FG+YTYGHQQGDWR N+M+DN  YGF
Sbjct:   85 TCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGF 180
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BLAST of mRNA_H-paniculata_contig11457.947.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 2.210e-46
Identity = 72/96 (75.00%), Postives = 82/96 (85.42%), Query Frame = 3 
Query:    6 TCEGNPKNNMGEARMDIVDSEVGYLGYNDSESYGLTWKVRGFCTNGTNPEIFDTVNVYGNIYNSKIHNNYFGIYTYGHQQGDWRENQMYDNIQYGF 293
            TCEGN KN MGEARMDI  SE+GYLGY DSESYGLTWKVRGFC + +NPE+FD VNVYGN+Y+S IH+  FG+YTYGHQQGDWR N+M+DN  YGF
Sbjct:  191 TCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGF 286
[Close]
BLAST of mRNA_H-paniculata_contig11457.947.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 6.250e-46
Identity = 71/96 (73.96%), Postives = 82/96 (85.42%), Query Frame = 3 
Query:    6 TCEGNPKNNMGEARMDIVDSEVGYLGYNDSESYGLTWKVRGFCTNGTNPEIFDTVNVYGNIYNSKIHNNYFGIYTYGHQQGDWRENQMYDNIQYGF 293
            TCEGN KN MGEARMDI +SE+GYLG+ DSESYGLTWKVRGFC + +NP IFD VNVYGN+Y+S IH+  FG+YTYGHQQGDWR N+M+DN  YGF
Sbjct:  194 TCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPGIFDEVNVYGNMYDSDIHHMRFGLYTYGHQQGDWRRNKMHDNSGYGF 289
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BLAST of mRNA_H-paniculata_contig11457.947.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 1.530e-45
Identity = 72/96 (75.00%), Postives = 82/96 (85.42%), Query Frame = 3 
Query:    6 TCEGNPKNNMGEARMDIVDSEVGYLGYNDSESYGLTWKVRGFCTNGTNPEIFDTVNVYGNIYNSKIHNNYFGIYTYGHQQGDWRENQMYDNIQYGF 293
            TCEGN KN MGEARMDI  SE+GYLGY DSESYGLTWKVRGFC + +NPE+FD VNVYGN+Y+S IH+  FG+YTYGHQQGDWR N+M+DN  YGF
Sbjct:  191 TCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGF 286
[Close]
BLAST of mRNA_H-paniculata_contig11457.947.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 2.290e-45
Identity = 72/96 (75.00%), Postives = 83/96 (86.46%), Query Frame = 3 
Query:    6 TCEGNPKNNMGEARMDIVDSEVGYLGYNDSESYGLTWKVRGFCTNGTNPEIFDTVNVYGNIYNSKIHNNYFGIYTYGHQQGDWRENQMYDNIQYGF 293
            TCEGN KN MGEARMDI +SE+GYLG+ DSESYGLTWKVRGFC + +NPEIFD VNVYGN+Y+S IH+  FG+YTYGHQQGDWR N+M+DN  YGF
Sbjct:  195 TCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGF 290
[Close]
BLAST of mRNA_H-paniculata_contig11457.947.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 2.330e-45
Identity = 68/95 (71.58%), Postives = 80/95 (84.21%), Query Frame = 3 
Query:    9 CEGNPKNNMGEARMDIVDSEVGYLGYNDSESYGLTWKVRGFCTNGTNPEIFDTVNVYGNIYNSKIHNNYFGIYTYGHQQGDWRENQMYDNIQYGF 293
            C G  K  MGEARMDI DSE+ YLGY  SESYGLTWKVRGFC +G+NPE+FD VNVYGNIY+S IH+N+FG+YTYGH+QGDWR N+M+ N +YGF
Sbjct:   15 CNGKAKKTMGEARMDIEDSEMAYLGYQGSESYGLTWKVRGFCKDGSNPEVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKMHHNREYGF 109
[Close]
BLAST of mRNA_H-paniculata_contig11457.947.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 2.740e-44
Identity = 70/96 (72.92%), Postives = 82/96 (85.42%), Query Frame = 3 
Query:    6 TCEGNPKNNMGEARMDIVDSEVGYLGYNDSESYGLTWKVRGFCTNGTNPEIFDTVNVYGNIYNSKIHNNYFGIYTYGHQQGDWRENQMYDNIQYGF 293
            TC G  KNNMGEARMDI DSE+GYLGY+ SESYGLTWKVRGFC + +N ++F+ VNVYGNIY+S IH+N FG+YTYGHQQGDWR N+M+DN  YGF
Sbjct:  188 TCNGRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFEDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGF 283
[Close]
BLAST of mRNA_H-paniculata_contig11457.947.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 4.020e-44
Identity = 68/95 (71.58%), Postives = 81/95 (85.26%), Query Frame = 3 
Query:    9 CEGNPKNNMGEARMDIVDSEVGYLGYNDSESYGLTWKVRGFCTNGTNPEIFDTVNVYGNIYNSKIHNNYFGIYTYGHQQGDWRENQMYDNIQYGF 293
            C+G  K  MGEARMDI DSE+ YLGY  SESYGLTWKVRGFC +G+NPE+FD VNVYGNIY+S IH+N+FG+YTYGH+QGDWR N+M+ N +YGF
Sbjct:  192 CDGKAKKTMGEARMDIEDSEMAYLGYQGSESYGLTWKVRGFCKDGSNPEVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKMHHNREYGF 286
[Close]
BLAST of mRNA_H-paniculata_contig11457.947.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 6.900e-44
Identity = 69/96 (71.88%), Postives = 81/96 (84.38%), Query Frame = 3 
Query:    6 TCEGNPKNNMGEARMDIVDSEVGYLGYNDSESYGLTWKVRGFCTNGTNPEIFDTVNVYGNIYNSKIHNNYFGIYTYGHQQGDWRENQMYDNIQYGF 293
            TC G  KNNMGEARMDI +SE+ YLGY+ +E+YGLTWKVRGFC +  NPE+FD VNVYGNIY+S IH+N FG+YTYGHQQGDWR N+M+DN  YGF
Sbjct:  162 TCNGRAKNNMGEARMDIENSEMAYLGYHGTETYGLTWKVRGFCVDKGNPELFDDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGF 257
[Close]
BLAST of mRNA_H-paniculata_contig11457.947.1 vs. uniprot
Match: D8LD45_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD45_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 7.030e-43
Identity = 67/96 (69.79%), Postives = 83/96 (86.46%), Query Frame = 3 
Query:    6 TCEGNPKNNMGEARMDIVDSEVGYLGYNDSESYGLTWKVRGFCTNGTNPEIFDTVNVYGNIYNSKIHNNYFGIYTYGHQQGDWRENQMYDNIQYGF 293
            TCEGN KN MGEARMDIV+SE+GY+G++DSESYGLTWKVRGFC + +NPE+FD VNVYGNIY+S++H+  F +YTYGHQQGDWR N ++ N  YG+
Sbjct:  280 TCEGNAKNTMGEARMDIVNSEMGYMGFHDSESYGLTWKVRGFCKDKSNPEVFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNTVHSNSGYGY 375
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11457.947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KES9_9PHAE8.570e-4875.00MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
D7FXE5_ECTSI2.210e-4675.00Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JU98_9PHAE6.250e-4673.96MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7G339_ECTSI1.530e-4575.00Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
D7FXE4_ECTSI2.290e-4575.00Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
Q7XAJ9_9PHAE2.330e-4571.58Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAJ7_9PHAE2.740e-4472.92Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
Q7XAK2_9PHAE4.020e-4471.58Mannuronan C-5-epimerase n=2 Tax=Laminaria digitat... [more]
Q7XAJ8_9PHAE6.900e-4471.88Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
D8LD45_ECTSI7.030e-4369.79Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11457contigH-paniculata_contig11457:4770..5929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue8.9e-27
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons3
Model size294
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11457.947.1prot_H-paniculata_contig11457.947.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11457 4770..5897 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928852.8948424-CDS-H-paniculata_contig11457:4769..48281622928852.8948424-CDS-H-paniculata_contig11457:4769..4828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11457 4770..4828 -
1691480645.3939328-CDS-H-paniculata_contig11457:4769..48281691480645.3939328-CDS-H-paniculata_contig11457:4769..4828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11457 4770..4828 -
1622928852.906511-CDS-H-paniculata_contig11457:5246..53611622928852.906511-CDS-H-paniculata_contig11457:5246..5361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11457 5247..5361 -
1691480645.4110327-CDS-H-paniculata_contig11457:5246..53611691480645.4110327-CDS-H-paniculata_contig11457:5246..5361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11457 5247..5361 -
1622928852.9248412-CDS-H-paniculata_contig11457:5810..58971622928852.9248412-CDS-H-paniculata_contig11457:5810..5897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11457 5811..5897 -
1691480645.4184258-CDS-H-paniculata_contig11457:5810..58971691480645.4184258-CDS-H-paniculata_contig11457:5810..5897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11457 5811..5897 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928852.9426124-UTR-H-paniculata_contig11457:5897..59291622928852.9426124-UTR-H-paniculata_contig11457:5897..5929Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11457 5898..5929 -
1691480645.425715-UTR-H-paniculata_contig11457:5897..59291691480645.425715-UTR-H-paniculata_contig11457:5897..5929Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11457 5898..5929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11457.947.1

>prot_H-paniculata_contig11457.947.1 ID=prot_H-paniculata_contig11457.947.1|Name=mRNA_H-paniculata_contig11457.947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
MGEARMDIVDSEVGYLGYNDSESYGLTWKVRGFCTNGTNPEIFDTVNVYG
NIYNSKIHNNYFGIYTYGHQQGDWRENQMYDNIQYGF
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mRNA from alignment at H-paniculata_contig11457:4770..5929-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11457.947.1 ID=mRNA_H-paniculata_contig11457.947.1|Name=mRNA_H-paniculata_contig11457.947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1160bp|location=Sequence derived from alignment at H-paniculata_contig11457:4770..5929- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTATACGTGCGAGGGAAATCCTAAGAACAACATGGGCGAGGCGCGCATG
GATATCGTCGACAGCGAGGTCGGCTACCTGGGGTACAATGACTCTGAGTC
GTATGGTCTGACGTGGAAGGTATGATGCGACTACGGTCGCACAAAAGTGT
TCGATAAAGCACCACACTTCACACTTTTGAGGTACATCGTTGCACACGGC
GCCAATCGTTCTAGGTGGTTTCCGCTACGTGCTACGCAACAGCAACTACC
CGTATTAGTGGCGATGAACAGTAGATAGAGGGTGTCGAACATTACACTAG
GTATATCTACCAGAAAAGGGTGCTTTGATTTGCAGATCATAATGTGTGCT
GTGACCCGCCATGCCTGACGGTATGTGTGGGGATATAACGTTTAATGGTA
GGGCTCAACTTCCAAAAATTGCGGGCGAGGGTCTCAGAGCTGAAGGAAAT
ATACGGTAAACACAAAAAACACATGCAACTATGATCACGTTGCCGATTTC
ATGCCCCAACTTCCAAAGAACTGTGCCTAACACACCTGTACCTTTGCTTG
TACCACCTAACATATCAGGTACGCGGATTCTGTACCAATGGAACAAACCC
CGAGATCTTTGATACGGTCAACGTGTACGGAAACATCTACAACTCCAAGA
TCCACAACAACTACTTTGGTATTTACACATACGGTAAGCTGTCAAGGAAA
GTTTGATTGAGAAAGCTAGACATGACATTATAGCGCTTGATAGCCGGGCA
GGGAGTGACGCGGATGCGGAAGATTACCCACGGTGCATGTTCGAGTGAAG
CGGTTCGCAAGTGAAAATGATAGACTAAGCGCCATTTGTTCCGAAACTTC
TTTGCTAAGGAAAAAATGTGCTGTTTGGCGGCTACGAGGACACGGAATTG
AAAAAATGTATATGGTGGTATATCGCCTTGTTCGATGATACCGATATATC
CAATATTCAAGAGATGTCGCGTCAATAGAGTAGTATTGTTGCTATAGCAC
TTGTACTCTGCTGTTACGGTGTGGTTGTTTTGGCGCCTTCTCGATCGCCT
CCTCATGTTAAAAATGACCTTGCTCGACCGTTGATGTCTCCTCTGAACCA
GGACACCAGCAGGGCGATTGGCGAGAAAACCAGATGTACGACAATATTCA
GTACGGCTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig11457:4770..5929-

>mRNA_H-paniculata_contig11457.947.1 ID=mRNA_H-paniculata_contig11457.947.1|Name=mRNA_H-paniculata_contig11457.947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig11457:4770..5929- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGAGGCGCGCATGGATATCGTCGACAGCGAGGTCGGCTACCTGGG
GTACAATGACTCTGAGTCGTATGGTCTGACGTGGAAGATGGGCGAGGCGC
GCATGGATATCGTCGACAGCGAGGTCGGCTACCTGGGGTACAATGACTCT
GAGTCGTATGGTCTGACGTGGAAGGTACGCGGATTCTGTACCAATGGAAC
AAACCCCGAGATCTTTGATACGGTCAACGTGTACGGAAACATCTACAACT
CCAAGATCCACAACAACTACTTTGGTATTTACACATACGGTACGCGGATT
CTGTACCAATGGAACAAACCCCGAGATCTTTGATACGGTCAACGTGTACG
GAAACATCTACAACTCCAAGATCCACAACAACTACTTTGGTATTTACACA
TACGGACACCAGCAGGGCGATTGGCGAGAAAACCAGATGTACGACAATAT
TCAGTACGGCTTCGACACCAGCAGGGCGATTGGCGAGAAAACCAGATGTA
CGACAATATTCAGTACGGCTTC
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