mRNA_H-paniculata_contig11455.946.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11455.946.1
Unique NamemRNA_H-paniculata_contig11455.946.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11455.946.1 vs. uniprot
Match: D7FLB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB7_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 2.180e-40
Identity = 69/93 (74.19%), Postives = 80/93 (86.02%), Query Frame = 1
Query:    1 MSGNGFLIRVKEIPADQALLPTESDIKKVGLKTSVRYTAVQAGMLALLWTLKSFKKTALFFPSVIGLLIVVRLAALPKMFSPKELDQLDAAVG 279
            MSGN FL+R KE+  D+ LL +ESDIKKVG  T+ +YTAVQA ML LLWTLKSF++TALFFPSVIGLLIVVRL ALPKMF+PK+L +LDAAVG
Sbjct:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG 93          
BLAST of mRNA_H-paniculata_contig11455.946.1 vs. uniprot
Match: A0A6H5KFP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP7_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 5.810e-37
Identity = 69/93 (74.19%), Postives = 80/93 (86.02%), Query Frame = 1
Query:    1 MSGNGFLIRVKEIPADQALLPTESDIKKVGLKTSVRYTAVQAGMLALLWTLKSFKKTALFFPSVIGLLIVVRLAALPKMFSPKELDQLDAAVG 279
            MSG  FL+R KE+  D+ LL +ESDIKKVG  T+ +YTAVQAGML LLWTLKSF++TALFFPSVIGLLIVVRL ALPKMF+PK+L +LDAAVG
Sbjct:  313 MSGTAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAGMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG 405          
BLAST of mRNA_H-paniculata_contig11455.946.1 vs. uniprot
Match: A0A835ZK65_9STRA (HCO3 transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK65_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.050e-33
Identity = 63/93 (67.74%), Postives = 78/93 (83.87%), Query Frame = 1
Query:    1 MSGNGFLIRVKEIPADQALLPTESDIKKVGLKTSVRYTAVQAGMLALLWTLKSFKKTALFFPSVIGLLIVVRLAALPKMFSPKELDQLDAAVG 279
            MSGN FL+R+KE+ ADQ+LL   S +KKVG KT++ YT+VQ GML LLWTLKSF++TALFFPSVIGLL++VRLA LPK+FS   LD+LD+AV 
Sbjct:  322 MSGNEFLLRIKELCADQSLLKPNSSVKKVGYKTALGYTSVQLGMLGLLWTLKSFRQTALFFPSVIGLLVLVRLAVLPKLFSKDALDELDSAVA 414          
BLAST of mRNA_H-paniculata_contig11455.946.1 vs. uniprot
Match: A0A836CJA6_9STRA (Bicarbonate transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA6_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.840e-23
Identity = 54/93 (58.06%), Postives = 67/93 (72.04%), Query Frame = 1
Query:    1 MSGNGFLIRVKEIPADQALLPTESDIKKVGLKTSVRYTAVQAGMLALLWTLKSFKKTALFFPSVIGLLIVVRLAALPKMFSPKELDQLDAAVG 279
            M GNGF  R+ ++  D  L+ + S +K VG  T++RYTAVQA MLALLWTLKSF +TAL FPSVIGLL+V+RL  LPK+FS + L  LD  V 
Sbjct:  423 MCGNGFFERITDLCMDPKLMGSGSVVKAVGRGTALRYTAVQALMLALLWTLKSFSQTALLFPSVIGLLVVMRLTVLPKLFSDRSLRLLDPPVA 515          
BLAST of mRNA_H-paniculata_contig11455.946.1 vs. uniprot
Match: A0A7R9UCL0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCL0_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.400e-20
Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 1
Query:    1 MSGNGFLIRVKEIPADQALLPTESDIKKVGLKTSVRYTAVQAGMLALLWTLKSFKKTALFFPSVIGLLIVVRLAALPKMFSPKELDQLDAAVG 279
            MSGN FL R+KE+  D+  L  +S I++VG     RYTA+Q   L  LW +KSF  TALFFPSVIGLL+++R A LP++FS ++L  LD A  
Sbjct:  415 MSGNDFLYRIKELAMDKKFLDEDSFIQRVGRSVVFRYTAIQVLCLMGLWAMKSFNSTALFFPSVIGLLVMIRKALLPRLFSKEDLRVLDRAAS 507          
BLAST of mRNA_H-paniculata_contig11455.946.1 vs. uniprot
Match: A0A0G4H159_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H159_VITBC)

HSP 1 Score: 93.2 bits (230), Expect = 4.180e-20
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 1
Query:    1 MSGNGFLIRVKEIPADQALLPTESDIKKVGLKTSVRYTAVQAGMLALLWTLKSFKKTALFFPSVIGLLIVVRLAALPKMFSPKELDQLDAAVG 279
            M+GN FL R+ +  AD+ LLP ES  +++     ++YTAVQ   LA L+TLKS + TALFFPSVIG L+V+R   LP++FS  ELD LDA V 
Sbjct:  739 MTGNDFLYRIGDTFADRELLPFESKFRQLPRSVVIKYTAVQLACLAGLFTLKSVRSTALFFPSVIGALMVIRAVVLPRLFSRHELDTLDATVA 831          
BLAST of mRNA_H-paniculata_contig11455.946.1 vs. uniprot
Match: A0A7S2F9D6_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F9D6_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 7.650e-20
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 1
Query:    1 MSGNGFLIRVKEIPADQALLPTESDIKKVGLKTSVRYTAVQAGMLALLWTLKSFKKTALFFPSVIGLLIVVRLAALPKMFSPKELDQLD 267
            M+GN FL R++ +  D   LP  + ++ +G    ++YT +Q G LA+LW LKSFK TALFFPSVIGLL+V+R  ALPK+F+  EL  LD
Sbjct:  300 MTGNSFLRRIQGLFLDMEKLPPTASVRLLGRYPVIKYTGIQMGCLAILWGLKSFKPTALFFPSVIGLLVVIRRFALPKLFNEDELAILD 388          
BLAST of mRNA_H-paniculata_contig11455.946.1 vs. uniprot
Match: A0A6U4I2T6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4I2T6_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 7.680e-20
Identity = 44/89 (49.44%), Postives = 65/89 (73.03%), Query Frame = 1
Query:    1 MSGNGFLIRVKEIPADQALLPTESDIKKVGLKTSVRYTAVQAGMLALLWTLKSFKKTALFFPSVIGLLIVVRLAALPKMFSPKELDQLD 267
            MSGN FL R+KE+  D   L +++ +++VG KT+ +YTA+Q   LA LW++KSF  TALFFPSVIG+L+++R   LP++F  ++L  LD
Sbjct:  583 MSGNDFLYRIKELCKDSKFLESDAFVRQVGYKTTAKYTAIQVACLAGLWSVKSFNSTALFFPSVIGVLVLIRKFLLPRLFLREDLVVLD 671          
BLAST of mRNA_H-paniculata_contig11455.946.1 vs. uniprot
Match: A0A7S3XU58_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU58_HETAK)

HSP 1 Score: 90.1 bits (222), Expect = 2.850e-19
Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    1 MSGNGFLIRVKEIPADQALLPTESDIKKVGLKTSVRYTAVQAGMLALLWTLKSFKKTALFFPSVIGLLIVVRLAALPKMFSPKELDQLDAAVG 279
            M+GNGFL R+K + A++A LP +  ++  G   ++RYTAVQA  L  LW LK    TAL+FPSVIG+L+ +R+  LP +FS +EL  LD++VG
Sbjct:  300 MTGNGFLGRLKSVWAEKAKLPEDHPVRAAGRGAALRYTAVQAACLGGLWALKMNPATALYFPSVIGVLMGIRIWILPHLFSEEELKALDSSVG 392          
BLAST of mRNA_H-paniculata_contig11455.946.1 vs. uniprot
Match: A0A7S3XU83_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU83_HETAK)

HSP 1 Score: 90.1 bits (222), Expect = 4.660e-19
Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    1 MSGNGFLIRVKEIPADQALLPTESDIKKVGLKTSVRYTAVQAGMLALLWTLKSFKKTALFFPSVIGLLIVVRLAALPKMFSPKELDQLDAAVG 279
            M+GNGFL R+K + A++A LP +  ++  G   ++RYTAVQA  L  LW LK    TAL+FPSVIG+L+ +R+  LP +FS +EL  LD++VG
Sbjct:  435 MTGNGFLGRLKSVWAEKAKLPEDHPVRAAGRGAALRYTAVQAACLGGLWALKMNPATALYFPSVIGVLMGIRIWILPHLFSEEELKALDSSVG 527          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11455.946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLB7_ECTSI2.180e-4074.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFP7_9PHAE5.810e-3774.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZK65_9STRA3.050e-3367.74HCO3 transporter family-domain-containing protein ... [more]
A0A836CJA6_9STRA1.840e-2358.06Bicarbonate transporter n=1 Tax=Tribonema minus Ta... [more]
A0A7R9UCL0_9STRA1.400e-2051.61Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A0G4H159_VITBC4.180e-2052.69Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S2F9D6_9STRA7.650e-2051.69Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A6U4I2T6_9STRA7.680e-2049.44Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3XU58_HETAK2.850e-1949.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XU83_HETAK4.660e-1949.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11455contigH-paniculata_contig11455:2977..5641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue8.8e-12
Seed eggNOG ortholog45157.CMR009CT
Hectar predicted targeting categoryother localisation
EggNOG free text desc.inorganic anion exchanger activity
EggNOG OGsKOG1172@1,KOG1172@2759
Ec32 ortholog descriptionBicarbonate transporter, eukaryotic
Ec32 orthologEc-00_002640.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size282
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11455.946.1prot_H-paniculata_contig11455.946.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11455 2977..5641 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928852.824842-CDS-H-paniculata_contig11455:2976..30991622928852.824842-CDS-H-paniculata_contig11455:2976..3099Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11455 2977..3099 +
1691480645.3662515-CDS-H-paniculata_contig11455:2976..30991691480645.3662515-CDS-H-paniculata_contig11455:2976..3099Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11455 2977..3099 +
1622928852.8411934-CDS-H-paniculata_contig11455:5018..51441622928852.8411934-CDS-H-paniculata_contig11455:5018..5144Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11455 5019..5144 +
1691480645.375968-CDS-H-paniculata_contig11455:5018..51441691480645.375968-CDS-H-paniculata_contig11455:5018..5144Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11455 5019..5144 +
1622928852.8563852-CDS-H-paniculata_contig11455:5608..56411622928852.8563852-CDS-H-paniculata_contig11455:5608..5641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11455 5609..5641 +
1691480645.3844352-CDS-H-paniculata_contig11455:5608..56411691480645.3844352-CDS-H-paniculata_contig11455:5608..5641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11455 5609..5641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11455.946.1

>prot_H-paniculata_contig11455.946.1 ID=prot_H-paniculata_contig11455.946.1|Name=mRNA_H-paniculata_contig11455.946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
MSGNGFLIRVKEIPADQALLPTESDIKKVGLKTSVRYTAVQAGMLALLWT
LKSFKKTALFFPSVIGLLIVVRLAALPKMFSPKELDQLDAAVG*
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mRNA from alignment at H-paniculata_contig11455:2977..5641+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11455.946.1 ID=mRNA_H-paniculata_contig11455.946.1|Name=mRNA_H-paniculata_contig11455.946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2665bp|location=Sequence derived from alignment at H-paniculata_contig11455:2977..5641+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGGTAATGGATTCTTGATCCGCGTGAAGGAAATTCCGGCTGACCA AGCCCTACTGCCGACCGAGAGCGACATCAAGAAGGTTGGCTTGAAAACTT CTGTTCGGTACACAGCGGTTCAGGTGGGTTTTTCCTGTTTGATAGTGGTC GCGTTGCTAATCAAACCCTCTTGCTTTTGTTAAAGGACTTGGGTGTATAT GCACTCGAAAATAGGAAGGAGTAAATATGATGTCATTATCGCGGGGAAAC GTTCTTTTTTACTACGTACGTCCCCTTCAGACGGAGACTGCCGTAGGGTT GGAATGAATGAATATATTACCTCAGAGCCTTGCTTTGACTGAAAAAATGA ATGGTGAGTGAGGTGGCAAGTGACCGACGACAACGACCAAAGCGGATTTA GGCGCCTCTTCTGACGGTTGATGCAGGGAGGGCCATCCGTGGGCGAAATG ATTGCGCCAAACGAGGGAACGTGCACTTGATTTTTGCTTGTATAGTCTTT CTCACTCCACTTCCCGCCTTACTCACCTTGGGCTTAATTGTTTTTTCCTT TGAGTTCAAGGCACGGTCCAACACCGTCCAATTTTTTGATAGCACGATGA AAATACCTTGTCAAGTCATTTGCCCACTGCTGCGAATACTGTTCATTGTG CTCGGTGCCGTCCTACTGTATATAGAATGTGGTGGATACAGTAGTGGATC CGATCTGGGGCCCGCTAGTGCCTCTTCCGGAAAGGACAGGCTAAAACCAA GTGCATTAGTTGTATACTCGAATCAAGTCGCTAGTGACTTCTGTGACCCT TCCACTACTCTACCCTGCATTTTTTCGCGTAAGCATCATGGCTCAGGCAA GGGGTGACCAGAAATCAATATCCAAGCACATACAACCTTGCGAATCCACT TTAGCTTCCACTATACGCATGTTATCTTTCCATGTACTTTCGACGAGGGT CTAAATCTTTGAAATTTCCTCCAAATTTCGAACCTTTAGATAGAGCCCAT GTGTATCCATGTGTGGTGTTTTGGTCACGAGTGAAGCCGATAATTTTACT GTTTGCAGCTTGGTGACCCAAAGTAGCATTTACCCTCGCACGAGTACATG TCCATCAAAAGGAAATCTTGCAGAGTTGACCAAGCACGAGAGTCTTTTTT TCCAGTTGTGATGGCACAGATAACTTGGCCTTGTGATGGCCGTCGTACTA CATAGAGCAGCACACTTCGGTGTGTACTCCTTCCCACATTCTTGTTTTTT TTCATGAAATGCTGTTTGATATATTTCATACTGGTATTTCCCATATTTTC GGGTAAGAATGGAGCCAAGAGTGCGCGTATATCGCCATAATAGCCATGGG TTTCACACGAATCGTCGTTCAGGGGCATCATGTGGGCCCATATATTTGGC GTTTTTAGTTTTTCACTACTGGGCGTGTATGCGAGGTATAGCAATGTGTA TTTATGTCATGTTTTTGACATTCGAATGGTTTGTATGCCCCGCTCGTTCC ATATCCCCTGTCTCGCACAAGGGTGCCTACCTATATTGGAGGTTGAATGA GGACAAATATTTTCATACGAAAGCAAGCGAAAAGCCTGTTTCAAAAGACC GGAAAGTCAGCGTTGACCCGATCAACATAATTTTAAGTAGCTACGCAGGA GTAGGAGAGTGTCATGCTCCAAAAACGACAATTCCTCCCTGCCCCTATCG TAGGACGATTTACTCGCCTGTCAGCTCAGAAGTTGTTGTGGTCAGAGTGT CCTTGCCGCCGTGTCGAAGCGTCATACGAACATCTTATCTGCTCGAAAAT AGACCGACCGTGCGAAATTCGCAAATTATCTGCGTCGTTTATAACAGTTT CCTCTGAACGTTTGTTCGTAACGTCGAACAATTGTAAAAACAAAATGCTC GAGTACTACAGAAACAAAAATATGGGACATCTGGTCAAACAAATATGTGA TCTGGTTTGTGTCTTTTCTATCAGACGTGTGGCGTCATCCCCGCTCCCCT CCCCTCCATGTATTCTCCTGCCACTGTTTTGCGGCTCGCCAGGCTGGTAT GCTGGCGCTCCTATGGACGCTGAAGTCGTTCAAGAAGACTGCCTTGTTTT TCCCGTCCGTCATCGGGTTGCTCATTGTCGTGAGGCTTGCAGCACTGCCC AAGATGTTTTCACCGAAGGTGCGTGTGCGTGTGCGTGTGCGCGTCCAACG GTGCTCTTTGTTGTTTCGTCGTCACGTTGGCTACATTTTGGCCGTCTATT TTTTGGTCGCGGAAAAAAAAACTATATTTTGGAGCATATTTTCACGAGGT CCTGAGGGGGGGGTGGAGACTAGGGACAGCGATAAGAGCCGGCGTTGGTT CTGCTCGCGTCGGGGTGAACAACAAAGCGTAAACCACGAAAGTAGAGGAA AGTATCAAACATCGATTTGGGACGAGTGGTATATTGACTGGTCTCTCCTT TTATCACGTTGAATGTTTGTATCGATGTTCCCACAAGGTGGGTACGCTGT CCATCTGCGTTCATGTACACGGGTTTATGTCGCCCGCTGCTTCTTCTATA TCGTGGATGGTGGCTGACCTGTGTTCCCTCCCTCCACTTGCGTGTCACCT GGCCTTTTTTTTCTTTTCTTTTTTTGCAACAGGAACTTGACCAGCTCGAT GCGGCGGTGGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig11455:2977..5641+

>mRNA_H-paniculata_contig11455.946.1 ID=mRNA_H-paniculata_contig11455.946.1|Name=mRNA_H-paniculata_contig11455.946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig11455:2977..5641+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGGTAATGGATTCTTGATCCGCGTGAAGGAAATTCCGGCTGACCA
AGCCCTACTGCCGACCGAGAGCGACATCAAGAAGGTTGGCTTGAAAACTT
CTGTTCGGTACACAGCGGTTCAGATGAGCGGTAATGGATTCTTGATCCGC
GTGAAGGAAATTCCGGCTGACCAAGCCCTACTGCCGACCGAGAGCGACAT
CAAGAAGGTTGGCTTGAAAACTTCTGTTCGGTACACAGCGGTTCAGGCTG
GTATGCTGGCGCTCCTATGGACGCTGAAGTCGTTCAAGAAGACTGCCTTG
TTTTTCCCGTCCGTCATCGGGTTGCTCATTGTCGTGAGGCTTGCAGCACT
GCCCAAGATGTTTTCACCGAAGGCTGGTATGCTGGCGCTCCTATGGACGC
TGAAGTCGTTCAAGAAGACTGCCTTGTTTTTCCCGTCCGTCATCGGGTTG
CTCATTGTCGTGAGGCTTGCAGCACTGCCCAAGATGTTTTCACCGAAGGA
ACTTGACCAGCTCGATGCGGCGGTGGGGTGAGAACTTGACCAGCTCGATG
CGGCGGTGGGGTGA
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