mRNA_H-paniculata_contig11452.943.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11452.943.1
Unique NamemRNA_H-paniculata_contig11452.943.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM)

HSP 1 Score: 209 bits (533), Expect = 1.070e-62
Identity = 116/291 (39.86%), Postives = 171/291 (58.76%), Query Frame = 1
Query:    1 VSQQFRMKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRYAVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHDLEGFADANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*VTWPSTETEYVAA*EAGKETVHLRELLGSTGFGCKGSTTLFGDNISAINLSEGSGTHCRTKHIGMRWHEIREWIREGVLASKCVQTGDQHADILRKGLSR 873
            + ++F +K+LG L   LG E+ R+R + TI ++Q  +I+ + +++G ++C+ V TP +   K+  P S D+   P          YR +VG+LMY +T TRPDI  AV + A   E   +  +   K I +YL T  DLG+ F G + G +L G+ADANWA D++ R+S TGY+F LNG AISW S++Q  V   STE EY+A   A +E V LR+LL   G  C G+TT F DN   I L++    H RTKHI +++H +RE + + V+  +   T +  AD   K L+R
Sbjct:   17 LKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKP-SEDEDFVPRYP-------YRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKG-ELIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALAR 298          
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT)

HSP 1 Score: 206 bits (524), Expect = 2.130e-61
Identity = 111/302 (36.75%), Postives = 171/302 (56.62%), Query Frame = 1
Query:    1 VSQQFRMKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPVE-GKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRYAVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHDLEGFADANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*VTWPSTETEYVAA*EAGKETVHLRELLGSTGFGCKGSTTLFGDNISAINLSEGSGTHCRTKHIGMRWHEIREWIREGVLASKCVQTGDQHADILRKGLSRVRFHRLRNLL 903
            +  +F++ D+G +  VLG  +RRDR  G +TISQ  +++ +LKR+G ++C+ V TP+E GK     P+          E   N+ EY+ ++G L Y +T TRPD+  AV   +  M  P +E +   K + RY+    + G+ F GKS    L G++DA+WA D++ R+S +GY+F++NG  +SWCS++Q  VT  +TE EYVA   A +E V LR LL   G      + +  DN  AI LS+    H RTKHI + +H +RE + +  +      T    AD++ K L R  F + R++L
Sbjct:    9 IGLKFKVDDMGEVKHVLGMVIRRDRRKGKMTISQSTYLQGILKRFGMEQCKPVSTPLEPGKHFQELPDD---------ENPTNTNEYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIGEKQDQPSIMNEDNQGAIELSKNPRFHNRTKHIDVAYHFVREKVGDKSINVNYCSTDKMLADVMTKSLPRQTFQKFRDML 301          
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Match: A0A4Y9ZSL8_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZSL8_9AGAM)

HSP 1 Score: 206 bits (523), Expect = 5.980e-61
Identity = 119/295 (40.34%), Postives = 158/295 (53.56%), Query Frame = 1
Query:   13 FRMKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPV---EGKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRYAVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHDLEGFADANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*VTWPSTETEYVAA*EAGKETVHLRELLGSTGFGCKGSTTLFGDNISAINLSEGSGTHCRTKHIGMRWHEIREWIREGVLASKCVQTGDQHADILRKGLSRVRFHR 888
            F M DLG +  VLG EV  DR   TIT+SQ  ++ E+LK  G+ +   + TPV   E   K+ APE              +   Y+  +GSLMY   GTRPD+ Y V   +     P         + F+YL   +D  + F GK    +L G+ DA+WA DV DR+SI+GY F L GGAISW S+KQ      STE EY+ A  A KE   LR  L   G  CK +T L  DN SA+ ++     H RTKHI MR+H +RE +  G +  + V TGDQ AD+L KGL + + ++
Sbjct:   41 FNMSDLGEVHWVLGLEVIHDRNARTITLSQCRYVEEILKCAGYSDACPIATPVLANEHMAKVDAPEV-------------DVLTYQSGIGSLMYAMLGTRPDLAYTVGVLSQHTAKPGEAHQHALVHAFKYLRGTADYQLVFDGKKPW-ELTGYVDADWAGDVNDRRSISGYTFLLAGGAISWSSKKQNTTALSSTEAEYIVATHAAKEATWLRTFLSKIGRPCKAATLLLMDNQSAMAIAWNPAFHARTKHIDMRYHFLREKVEAGAINLQYVPTGDQVADVLMKGLVKAKHNK 321          
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM)

HSP 1 Score: 204 bits (520), Expect = 1.280e-59
Identity = 113/291 (38.83%), Postives = 171/291 (58.76%), Query Frame = 1
Query:    1 VSQQFRMKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRYAVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHDLEGFADANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*VTWPSTETEYVAA*EAGKETVHLRELLGSTGFGCKGSTTLFGDNISAINLSEGSGTHCRTKHIGMRWHEIREWIREGVLASKCVQTGDQHADILRKGLSR 873
            + ++F +K+LG L   LG E+ R+R + TI ++Q  +I+ + +++G ++C+ V TP +   K+  P + D+   P          YR +VG+LMY +T TRPDI  AV + A   E   +  +   K I +YL T  DLG+ F G + G +L G+ADA+WA D++ R+S TGY+F LNG AISW S++Q  V   STE EY+A   A +E V LR+LL   G  C  +TT+F DN   I L++    H RTKHI +++H +RE + + V+  +   T +  AD   K L+R
Sbjct:  113 LKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKP-AEDEVFVPRYP-------YRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKG-ELIGYADASWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVAATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALAR 394          
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Match: A0A4Y9ZJA2_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZJA2_9AGAM)

HSP 1 Score: 213 bits (542), Expect = 8.860e-59
Identity = 118/296 (39.86%), Postives = 169/296 (57.09%), Query Frame = 1
Query:    1 VSQQFRMKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRYAVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHDLEGFADANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*VTWPSTETEYVAA*EAGKETVHLRELLGSTGFGCKGSTTLFGDNISAINLSEGSGTHCRTKHIGMRWHEIREWIREGVLASKCVQTGDQHADILRKGLSRVRFHR 888
            +S+ F + DLG +  +LG EV RDR    +T+SQ  +I +VL+R+GF + R + TPV    K+    +A+           ++ +Y+  VGSLMY   GTRPDI YAV   +     P  E ++     F+YL   +D  + + GK    +L G+ D++WA D  DR+SI+GY+F L G AISW S+KQ+ V   STE EY+AA  A KE V LR LL       +  T L  DN  AI L++    H  TKHI +R H +R+ + +G +A++ + T DQ AD+L KGLSR +  R
Sbjct: 1112 LSKIFEITDLGEMRWILGMEVTRDRALKIVTLSQKRYIADVLERHGFADARPISTPVSVNQKLEKLPAAEI----------DARKYQSAVGSLMYAMLGTRPDIAYAVGLLSQHSSAPGAEHWNVAARTFKYLRRTADYQLVYNGKRKNDELTGYVDSDWANDPNDRRSISGYVFTLAGAAISWSSKKQQSVAQSSTEAEYMAAAHATKEAVWLRMLLSDLRQPIERPTPLLIDNQGAIALAKNPAYHACTKHIDVRHHFLRDKVEDGTIAAEYIPTADQVADVLTKGLSREKHDR 1397          
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Match: A0A401H2X4_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H2X4_9APHY)

HSP 1 Score: 197 bits (501), Expect = 6.690e-58
Identity = 111/300 (37.00%), Postives = 163/300 (54.33%), Query Frame = 1
Query:    1 VSQQFRMKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPV---EGKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRYAVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHD-LEGFADANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*VTWPSTETEYVAA*EAGKETVHLRELLGSTGFGCKGSTTLFGDNISAINLSEGSGTHCRTKHIGMRWHEIREWIREGVLASKCVQTGDQHADILRKGLSRVRFHR 888
            +  +F M DLG    +LG E+ RDRP   + +SQ  ++ + L +YG  +CR V TP+   +  VK+S  E   KP             Y+  +GSLMY   GT PD+ + V   +     P +E +     ++RYL   +D  + + G +   + L G+ DA+WA ++ DR+S+TG++F ++ GA+SW S++Q      STE EY+A     KE V LR  L   G   KG T L  DN SAI LS+ +  H RTKHI +R+H IRE    G +  + V TG+Q AD+L KGL R +  +
Sbjct:   18 LKSRFEMTDLGEARWLLGMEITRDRPRRVLELSQHQYVEKCLAQYGMADCRPVSTPMAQNQKLVKLSEAEIDPKP-------------YQSALGSLMYAMIGTHPDLAFTVSALSQHAATPGKEHWIALMRVYRYLRGTADKKLVYCGTTKEKEPLLGYVDADWAANINDRRSVTGFVFLISEGAVSWSSKRQHSTAQSSTEAEYMAGAHGTKEAVWLRTFLSEIGQVQKGPTPLLIDNQSAIALSKNAAFHERTKHIAVRYHFIREKYDSGEIEPEYVPTGNQVADVLTKGLPREKHEK 304          
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Match: A0A0C9VSW1_SPHS4 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9VSW1_SPHS4)

HSP 1 Score: 206 bits (525), Expect = 9.620e-58
Identity = 115/291 (39.52%), Postives = 161/291 (55.33%), Query Frame = 1
Query:   10 QFRMKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRYAVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHDLEGFADANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*VTWPSTETEYVAA*EAGKETVHLRELLGSTGFGCKGSTTLFGDNISAINLSEGSGTHCRTKHIGMRWHEIREWIREGVLASKCVQTGDQHADILRKGLSRVRF 882
            +F M DLG    +LG E+ RDRP+ T++ISQ  +  E+L+R+G  +C+  PTP+E  V +     A+  S+           Y+  VGSLMY   GT PD+ ++V   +     P  E     K + RY+   +DLG+ F G  +   +E F DA+WA+D  +R S+TGY+  L G  ISW S+KQ      STE EY+AA  A KE + LR  +   GF     T L+ DN SAI L + S  H RTKHI +R+H IRE + +  +    + T DQ AD L KGLS+V+ 
Sbjct:  422 KFEMTDLGEAHWILGMEITRDRPSHTLSISQKAYFAEILERFGMSDCKPAPTPMEVGVSLRKLSEAEVDSQ----------HYQSAVGSLMYGMIGTHPDVAHSVGVLSQHCATPGEEHEKGNKRVLRYIKGTTDLGLVFIGSGNTK-IEVFIDADWAQDKNNRHSLTGYVCTLAGATISWSSKKQSSTAQSSTEAEYMAATHAAKEALWLRMFMRELGFEQDSPTPLYVDNQSAITLVKNSEFHSRTKHINVRYHFIRENVEDEQIELVYIPTEDQVADALTKGLSKVKL 701          
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM)

HSP 1 Score: 209 bits (532), Expect = 1.640e-57
Identity = 119/292 (40.75%), Postives = 158/292 (54.11%), Query Frame = 1
Query:   13 FRMKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPV---EGKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRYAVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHDLEGFADANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*VTWPSTETEYVAA*EAGKETVHLRELLGSTGFGCKGSTTLFGDNISAINLSEGSGTHCRTKHIGMRWHEIREWIREGVLASKCVQTGDQHADILRKGLSRVR 879
            F M DLG +  VLG EV RDR   TI +SQ  ++ E+L+R G+ + R + TP    E   K+ APE              +   Y+  +GSLMY   GTRPD+ Y V   +     P           F+YL   +D  + F GK    +L G+ DA+WA DV DR+SI+GY F L GGA+SW S+KQ      STE EY+AA  A KE   LR  LG  G  CK +T L  DN SA+ ++     H RTKHI +R+H +RE +  G +  + V TGDQ AD+L KGL + +
Sbjct:  847 FNMSDLGEVHWVLGLEVIRDRNARTIALSQRRYVEEILERAGYSDARPIATPALANEHMAKVDAPEV-------------DVLTYQSGIGSLMYAMLGTRPDLAYTVGVLSQHTAKPGEAHQRALVRAFKYLRGTADYQLVFDGKKPW-ELTGYVDADWAGDVNDRRSISGYTFLLAGGAVSWSSKKQNTTALSSTEAEYIAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAK 1124          
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 202 bits (515), Expect = 1.680e-57
Identity = 110/298 (36.91%), Postives = 170/298 (57.05%), Query Frame = 1
Query:   10 QFRMKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRYAVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHDLEGFADANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*VTWPSTETEYVAA*EAGKETVHLRELLGSTGFGCKGSTTLFGDNISAINLSEGSGTHCRTKHIGMRWHEIREWIREGVLASKCVQTGDQHADILRKGLSRVRFHRLRNLL 903
            +F M DLG +  +LG E++RDR   TI++ Q  +I  +L R+   + + + T ++    ++  +S   PS P +     +  YR  +GSLMY + GTRPD+ YAV   +  M++P    +   K + RYL    +  +T+GG  + + +EGF+DA+W    + R+SI+GY+F ++GGA+SW S+KQ  V   STE EYVA   A KE +  R  LG         TTL+ DN SAI L++ +  H RTKHI +R+H IR+ +  G +      T D  AD+L K L+R +  ++R L+
Sbjct:  251 KFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNLQDAKSLTTAIDPSFSLTTDQS---PSTPQQYDDMRNILYREAIGSLMYAAIGTRPDVSYAVTALSQFMQNPGHPHWEAAKRVMRYLKGTKEEWLTYGG-DNANGMEGFSDADWGSS-DHRRSISGYVFLIDGGAVSWSSKKQPIVALSSTEAEYVAMTHAAKEVLWTRAFLGEIISPFDKPTTLYADNQSAITLAKDNLYHARTKHIAIRFHFIRDIVERGEVDIVYCPTADMAADVLTKPLTRPKMEKMRGLI 543          
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Match: A0A090BBM5_HYAAE (RxLR effector candidate protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=A0A090BBM5_HYAAE)

HSP 1 Score: 196 bits (497), Expect = 2.660e-57
Identity = 110/291 (37.80%), Postives = 164/291 (56.36%), Query Frame = 1
Query:    1 VSQQFRMKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRYAVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHDLEGFADANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*VTWPSTETEYVAA*EAGKETVHLRELLGSTGFGCKGSTTLFGDNISAINLSEGSGTHCRTKHIGMRWHEIREWIREGVLASKCVQTGDQHADILRKGLSR 873
            + ++F +KDLG L   LG E+ R R    I ++Q  +I+ + +++G D C+ V TP +   K++          P+ E       YR +VG+LMY +T TRPDI +AV + A   E   +  ++  K I +YL T  D+ I F G + G  L  FADANWA D++ R+S TGY+F LNG AISW S++Q  V   STE EY++   A +E + LR LL    +  + +TT+F DN   I L++    H RTKHI +++H +RE +   V+A +   T +  AD   K LS+
Sbjct:   17 IKEEFSIKDLGDLKYCLGIEIHRKRDERIIKMNQRAYIKRLAEKFGVDNCKDVHTPADSNAKLAKM--------PDEEVFVPKFPYRELVGALMYITTCTRPDIAHAVGEVAKYCERYNKSHWTAAKRIIKYLKTTQDMSIVFSGFNKGELLR-FADANWAGDLDTRRSTTGYVFFLNGSAISWNSKRQSTVATSSTEAEYMSLYSATQEAIWLRCLLKDLQYCAEVATTIFQDNQGCIALAKNPVYHSRTKHIDIKFHFLREKVASEVIALEFKPTEEMIADGFTKALSK 298          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3GB69_PHYRM1.070e-6239.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9D5L2_PARCT2.130e-6136.75Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A4Y9ZSL8_9AGAM5.980e-6140.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3GB17_PHYRM1.280e-5938.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y9ZJA2_9AGAM8.860e-5939.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A401H2X4_9APHY6.690e-5837.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0C9VSW1_SPHS49.620e-5839.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Y9ZY34_9AGAM1.640e-5740.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y9ZVS1_9AGAM1.680e-5736.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A090BBM5_HYAAE2.660e-5737.80RxLR effector candidate protein n=1 Tax=Hyaloperon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11452contigH-paniculata_contig11452:5392..6345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue4.1e-29
Seed eggNOG ortholog164328.Phyra71619
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHW0@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size903
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11452.943.1prot_H-paniculata_contig11452.943.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11452 5722..6327 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928852.5943685-UTR-H-paniculata_contig11452:5391..57211622928852.5943685-UTR-H-paniculata_contig11452:5391..5721Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11452 5392..5721 -
1691480645.277948-UTR-H-paniculata_contig11452:5391..57211691480645.277948-UTR-H-paniculata_contig11452:5391..5721Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11452 5392..5721 -
1622928852.6282997-UTR-H-paniculata_contig11452:6327..63451622928852.6282997-UTR-H-paniculata_contig11452:6327..6345Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11452 6328..6345 -
1691480645.3039658-UTR-H-paniculata_contig11452:6327..63451691480645.3039658-UTR-H-paniculata_contig11452:6327..6345Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11452 6328..6345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928852.6080606-CDS-H-paniculata_contig11452:5721..60671622928852.6080606-CDS-H-paniculata_contig11452:5721..6067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11452 5722..6067 -
1691480645.2868385-CDS-H-paniculata_contig11452:5721..60671691480645.2868385-CDS-H-paniculata_contig11452:5721..6067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11452 5722..6067 -
1622928852.6181316-CDS-H-paniculata_contig11452:6118..63271622928852.6181316-CDS-H-paniculata_contig11452:6118..6327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11452 6119..6327 -
1691480645.294533-CDS-H-paniculata_contig11452:6118..63271691480645.294533-CDS-H-paniculata_contig11452:6118..6327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11452 6119..6327 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11452.943.1

>prot_H-paniculata_contig11452.943.1 ID=prot_H-paniculata_contig11452.943.1|Name=mRNA_H-paniculata_contig11452.943.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=185bp
MKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTP
VEGKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRY
AVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHDLEGFA
DANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*
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mRNA from alignment at H-paniculata_contig11452:5392..6345-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11452.943.1 ID=mRNA_H-paniculata_contig11452.943.1|Name=mRNA_H-paniculata_contig11452.943.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=954bp|location=Sequence derived from alignment at H-paniculata_contig11452:5392..6345- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAGCCAGCAATTTAGGATGAAAGACTTGGGTTCTCTCTCATGCGTGTT GGGAACAGAAGTACGACGTGACCGCCCTAATGGTACCATAACCATCTCGC AGGGTATCCACATCCGCGAGGTACTAAAAAGATACGGTTTTGACGAATGT CGAGGGGTGCCCACCCCTGTAGAGGGGAAAGTGAAGATTTCGGCACCCGA GTCGGCCGACAAGCCCTCCGAACCGAAGTTACATGGAGATGCACTGTCGG AGATAGGCGCAGGAGTACAAGACAGCAGCAGAGAGAAGAGTGGTAATTCA ACTGAATACAGAGGCATGGTAGGATCACTCATGTACACCTCGACAGGAAC TAGACCTGATATAAGATACGCGGTACACCAAGCAGCACCTCGTATGGAGG ACCCATGTCGGGAAGACTTCAGTACATGCAAGTACATTTTTCGTTATCTC AGTACTGTGTCTGACCTCGGCATTACGTTCGGCGGAAAGAGTCATGGTCA CGATCTGGAAGGATTCGCTGATGCCAATTGGGCAGAAGATGTTGAGGATC GAAAGTCCATAACAGGATATATCTTCAAACTGAACGGTGGTGCGATAAGT TGGTGCTCTAGGAAGCAAGAGTAAGTCACGTGGCCCAGTACAGAGACAGA GTACGTTGCTGCATGAGAAGCGGGAAAGGAGACGGTACATCTTAGGGAGT TACTAGGATCGACAGGTTTCGGATGCAAGGGGAGCACGACACTGTTTGGG GACAATATATCAGCTATTAATCTCAGTGAGGGATCTGGCACACACTGCAG GACAAAGCACATCGGAATGCGCTGGCACGAAATTCGAGAATGGATTCGGG AAGGAGTATTGGCGTCGAAATGCGTGCAGACCGGCGACCAACATGCTGAC ATTTTAAGGAAGGGACTAAGCAGAGTAAGGTTTCACAGACTGAGAAATTT ACTT
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Coding sequence (CDS) from alignment at H-paniculata_contig11452:5392..6345-

>mRNA_H-paniculata_contig11452.943.1 ID=mRNA_H-paniculata_contig11452.943.1|Name=mRNA_H-paniculata_contig11452.943.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig11452:5392..6345- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGACTTGGGTTCTCTCTCATGCGTGTTGGGAACAGAAGTACGACG
TGACCGCCCTAATGGTACCATAACCATCTCGCAGGGTATCCACATCCGCG
AGGTACTAAAAAGATACGGTTTTGACGAATGTCGAGGGGTGCCCACCCCT
GTAGAGGGGAAAGTGAAGATTTCGGCACCCGAGTCGGCCGACAAGCCCTC
CGAACCGAAATGAAAGACTTGGGTTCTCTCTCATGCGTGTTGGGAACAGA
AGTACGACGTGACCGCCCTAATGGTACCATAACCATCTCGCAGGGTATCC
ACATCCGCGAGGTACTAAAAAGATACGGTTTTGACGAATGTCGAGGGGTG
CCCACCCCTGTAGAGGGGAAAGTGAAGATTTCGGCACCCGAGTCGGCCGA
CAAGCCCTCCGAACCGAACAGAGAGAAGAGTGGTAATTCAACTGAATACA
GAGGCATGGTAGGATCACTCATGTACACCTCGACAGGAACTAGACCTGAT
ATAAGATACGCGGTACACCAAGCAGCACCTCGTATGGAGGACCCATGTCG
GGAAGACTTCAGTACATGCAAGTACATTTTTCGTTATCTCAGTACTGTGT
CTGACCTCGGCATTACGTTCGGCGGAAAGAGTCATGGTCACGATCTGGAA
GGATTCGCTGATGCCAATTGGGCAGAAGATGTTGAGGATCGAAAGTCCAT
AACAGGATATATCTTCAAACTGAACGGTGGTGCGATAAGTTGGTGCTCTA
GGAAGCAAGAGTAACAGAGAGAAGAGTGGTAATTCAACTGAATACAGAGG
CATGGTAGGATCACTCATGTACACCTCGACAGGAACTAGACCTGATATAA
GATACGCGGTACACCAAGCAGCACCTCGTATGGAGGACCCATGTCGGGAA
GACTTCAGTACATGCAAGTACATTTTTCGTTATCTCAGTACTGTGTCTGA
CCTCGGCATTACGTTCGGCGGAAAGAGTCATGGTCACGATCTGGAAGGAT
TCGCTGATGCCAATTGGGCAGAAGATGTTGAGGATCGAAAGTCCATAACA
GGATATATCTTCAAACTGAACGGTGGTGCGATAAGTTGGTGCTCTAGGAA
GCAAGAGTAA
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