mRNA_H-paniculata_contig11452.943.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM) HSP 1 Score: 209 bits (533), Expect = 1.070e-62 Identity = 116/291 (39.86%), Postives = 171/291 (58.76%), Query Frame = 1 Query: 1 VSQQFRMKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRYAVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHDLEGFADANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*VTWPSTETEYVAA*EAGKETVHLRELLGSTGFGCKGSTTLFGDNISAINLSEGSGTHCRTKHIGMRWHEIREWIREGVLASKCVQTGDQHADILRKGLSR 873 + ++F +K+LG L LG E+ R+R + TI ++Q +I+ + +++G ++C+ V TP + K+ P S D+ P YR +VG+LMY +T TRPDI AV + A E + + K I +YL T DLG+ F G + G +L G+ADANWA D++ R+S TGY+F LNG AISW S++Q V STE EY+A A +E V LR+LL G C G+TT F DN I L++ H RTKHI +++H +RE + + V+ + T + AD K L+R Sbjct: 17 LKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKP-SEDEDFVPRYP-------YRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKG-ELIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALAR 298
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT) HSP 1 Score: 206 bits (524), Expect = 2.130e-61 Identity = 111/302 (36.75%), Postives = 171/302 (56.62%), Query Frame = 1 Query: 1 VSQQFRMKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPVE-GKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRYAVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHDLEGFADANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*VTWPSTETEYVAA*EAGKETVHLRELLGSTGFGCKGSTTLFGDNISAINLSEGSGTHCRTKHIGMRWHEIREWIREGVLASKCVQTGDQHADILRKGLSRVRFHRLRNLL 903 + +F++ D+G + VLG +RRDR G +TISQ +++ +LKR+G ++C+ V TP+E GK P+ E N+ EY+ ++G L Y +T TRPD+ AV + M P +E + K + RY+ + G+ F GKS L G++DA+WA D++ R+S +GY+F++NG +SWCS++Q VT +TE EYVA A +E V LR LL G + + DN AI LS+ H RTKHI + +H +RE + + + T AD++ K L R F + R++L Sbjct: 9 IGLKFKVDDMGEVKHVLGMVIRRDRRKGKMTISQSTYLQGILKRFGMEQCKPVSTPLEPGKHFQELPDD---------ENPTNTNEYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIGEKQDQPSIMNEDNQGAIELSKNPRFHNRTKHIDVAYHFVREKVGDKSINVNYCSTDKMLADVMTKSLPRQTFQKFRDML 301
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Match: A0A4Y9ZSL8_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZSL8_9AGAM) HSP 1 Score: 206 bits (523), Expect = 5.980e-61 Identity = 119/295 (40.34%), Postives = 158/295 (53.56%), Query Frame = 1 Query: 13 FRMKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPV---EGKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRYAVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHDLEGFADANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*VTWPSTETEYVAA*EAGKETVHLRELLGSTGFGCKGSTTLFGDNISAINLSEGSGTHCRTKHIGMRWHEIREWIREGVLASKCVQTGDQHADILRKGLSRVRFHR 888 F M DLG + VLG EV DR TIT+SQ ++ E+LK G+ + + TPV E K+ APE + Y+ +GSLMY GTRPD+ Y V + P + F+YL +D + F GK +L G+ DA+WA DV DR+SI+GY F L GGAISW S+KQ STE EY+ A A KE LR L G CK +T L DN SA+ ++ H RTKHI MR+H +RE + G + + V TGDQ AD+L KGL + + ++ Sbjct: 41 FNMSDLGEVHWVLGLEVIHDRNARTITLSQCRYVEEILKCAGYSDACPIATPVLANEHMAKVDAPEV-------------DVLTYQSGIGSLMYAMLGTRPDLAYTVGVLSQHTAKPGEAHQHALVHAFKYLRGTADYQLVFDGKKPW-ELTGYVDADWAGDVNDRRSISGYTFLLAGGAISWSSKKQNTTALSSTEAEYIVATHAAKEATWLRTFLSKIGRPCKAATLLLMDNQSAMAIAWNPAFHARTKHIDMRYHFLREKVEAGAINLQYVPTGDQVADVLMKGLVKAKHNK 321
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM) HSP 1 Score: 204 bits (520), Expect = 1.280e-59 Identity = 113/291 (38.83%), Postives = 171/291 (58.76%), Query Frame = 1 Query: 1 VSQQFRMKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRYAVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHDLEGFADANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*VTWPSTETEYVAA*EAGKETVHLRELLGSTGFGCKGSTTLFGDNISAINLSEGSGTHCRTKHIGMRWHEIREWIREGVLASKCVQTGDQHADILRKGLSR 873 + ++F +K+LG L LG E+ R+R + TI ++Q +I+ + +++G ++C+ V TP + K+ P + D+ P YR +VG+LMY +T TRPDI AV + A E + + K I +YL T DLG+ F G + G +L G+ADA+WA D++ R+S TGY+F LNG AISW S++Q V STE EY+A A +E V LR+LL G C +TT+F DN I L++ H RTKHI +++H +RE + + V+ + T + AD K L+R Sbjct: 113 LKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKP-AEDEVFVPRYP-------YRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKG-ELIGYADASWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVAATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALAR 394
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Match: A0A4Y9ZJA2_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZJA2_9AGAM) HSP 1 Score: 213 bits (542), Expect = 8.860e-59 Identity = 118/296 (39.86%), Postives = 169/296 (57.09%), Query Frame = 1 Query: 1 VSQQFRMKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRYAVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHDLEGFADANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*VTWPSTETEYVAA*EAGKETVHLRELLGSTGFGCKGSTTLFGDNISAINLSEGSGTHCRTKHIGMRWHEIREWIREGVLASKCVQTGDQHADILRKGLSRVRFHR 888 +S+ F + DLG + +LG EV RDR +T+SQ +I +VL+R+GF + R + TPV K+ +A+ ++ +Y+ VGSLMY GTRPDI YAV + P E ++ F+YL +D + + GK +L G+ D++WA D DR+SI+GY+F L G AISW S+KQ+ V STE EY+AA A KE V LR LL + T L DN AI L++ H TKHI +R H +R+ + +G +A++ + T DQ AD+L KGLSR + R Sbjct: 1112 LSKIFEITDLGEMRWILGMEVTRDRALKIVTLSQKRYIADVLERHGFADARPISTPVSVNQKLEKLPAAEI----------DARKYQSAVGSLMYAMLGTRPDIAYAVGLLSQHSSAPGAEHWNVAARTFKYLRRTADYQLVYNGKRKNDELTGYVDSDWANDPNDRRSISGYVFTLAGAAISWSSKKQQSVAQSSTEAEYMAAAHATKEAVWLRMLLSDLRQPIERPTPLLIDNQGAIALAKNPAYHACTKHIDVRHHFLRDKVEDGTIAAEYIPTADQVADVLTKGLSREKHDR 1397
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Match: A0A401H2X4_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H2X4_9APHY) HSP 1 Score: 197 bits (501), Expect = 6.690e-58 Identity = 111/300 (37.00%), Postives = 163/300 (54.33%), Query Frame = 1 Query: 1 VSQQFRMKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPV---EGKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRYAVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHD-LEGFADANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*VTWPSTETEYVAA*EAGKETVHLRELLGSTGFGCKGSTTLFGDNISAINLSEGSGTHCRTKHIGMRWHEIREWIREGVLASKCVQTGDQHADILRKGLSRVRFHR 888 + +F M DLG +LG E+ RDRP + +SQ ++ + L +YG +CR V TP+ + VK+S E KP Y+ +GSLMY GT PD+ + V + P +E + ++RYL +D + + G + + L G+ DA+WA ++ DR+S+TG++F ++ GA+SW S++Q STE EY+A KE V LR L G KG T L DN SAI LS+ + H RTKHI +R+H IRE G + + V TG+Q AD+L KGL R + + Sbjct: 18 LKSRFEMTDLGEARWLLGMEITRDRPRRVLELSQHQYVEKCLAQYGMADCRPVSTPMAQNQKLVKLSEAEIDPKP-------------YQSALGSLMYAMIGTHPDLAFTVSALSQHAATPGKEHWIALMRVYRYLRGTADKKLVYCGTTKEKEPLLGYVDADWAANINDRRSVTGFVFLISEGAVSWSSKRQHSTAQSSTEAEYMAGAHGTKEAVWLRTFLSEIGQVQKGPTPLLIDNQSAIALSKNAAFHERTKHIAVRYHFIREKYDSGEIEPEYVPTGNQVADVLTKGLPREKHEK 304
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Match: A0A0C9VSW1_SPHS4 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9VSW1_SPHS4) HSP 1 Score: 206 bits (525), Expect = 9.620e-58 Identity = 115/291 (39.52%), Postives = 161/291 (55.33%), Query Frame = 1 Query: 10 QFRMKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRYAVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHDLEGFADANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*VTWPSTETEYVAA*EAGKETVHLRELLGSTGFGCKGSTTLFGDNISAINLSEGSGTHCRTKHIGMRWHEIREWIREGVLASKCVQTGDQHADILRKGLSRVRF 882 +F M DLG +LG E+ RDRP+ T++ISQ + E+L+R+G +C+ PTP+E V + A+ S+ Y+ VGSLMY GT PD+ ++V + P E K + RY+ +DLG+ F G + +E F DA+WA+D +R S+TGY+ L G ISW S+KQ STE EY+AA A KE + LR + GF T L+ DN SAI L + S H RTKHI +R+H IRE + + + + T DQ AD L KGLS+V+ Sbjct: 422 KFEMTDLGEAHWILGMEITRDRPSHTLSISQKAYFAEILERFGMSDCKPAPTPMEVGVSLRKLSEAEVDSQ----------HYQSAVGSLMYGMIGTHPDVAHSVGVLSQHCATPGEEHEKGNKRVLRYIKGTTDLGLVFIGSGNTK-IEVFIDADWAQDKNNRHSLTGYVCTLAGATISWSSKKQSSTAQSSTEAEYMAATHAAKEALWLRMFMRELGFEQDSPTPLYVDNQSAITLVKNSEFHSRTKHINVRYHFIRENVEDEQIELVYIPTEDQVADALTKGLSKVKL 701
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM) HSP 1 Score: 209 bits (532), Expect = 1.640e-57 Identity = 119/292 (40.75%), Postives = 158/292 (54.11%), Query Frame = 1 Query: 13 FRMKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPV---EGKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRYAVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHDLEGFADANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*VTWPSTETEYVAA*EAGKETVHLRELLGSTGFGCKGSTTLFGDNISAINLSEGSGTHCRTKHIGMRWHEIREWIREGVLASKCVQTGDQHADILRKGLSRVR 879 F M DLG + VLG EV RDR TI +SQ ++ E+L+R G+ + R + TP E K+ APE + Y+ +GSLMY GTRPD+ Y V + P F+YL +D + F GK +L G+ DA+WA DV DR+SI+GY F L GGA+SW S+KQ STE EY+AA A KE LR LG G CK +T L DN SA+ ++ H RTKHI +R+H +RE + G + + V TGDQ AD+L KGL + + Sbjct: 847 FNMSDLGEVHWVLGLEVIRDRNARTIALSQRRYVEEILERAGYSDARPIATPALANEHMAKVDAPEV-------------DVLTYQSGIGSLMYAMLGTRPDLAYTVGVLSQHTAKPGEAHQRALVRAFKYLRGTADYQLVFDGKKPW-ELTGYVDADWAGDVNDRRSISGYTFLLAGGAVSWSSKKQNTTALSSTEAEYIAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAK 1124
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM) HSP 1 Score: 202 bits (515), Expect = 1.680e-57 Identity = 110/298 (36.91%), Postives = 170/298 (57.05%), Query Frame = 1 Query: 10 QFRMKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRYAVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHDLEGFADANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*VTWPSTETEYVAA*EAGKETVHLRELLGSTGFGCKGSTTLFGDNISAINLSEGSGTHCRTKHIGMRWHEIREWIREGVLASKCVQTGDQHADILRKGLSRVRFHRLRNLL 903 +F M DLG + +LG E++RDR TI++ Q +I +L R+ + + + T ++ ++ +S PS P + + YR +GSLMY + GTRPD+ YAV + M++P + K + RYL + +T+GG + + +EGF+DA+W + R+SI+GY+F ++GGA+SW S+KQ V STE EYVA A KE + R LG TTL+ DN SAI L++ + H RTKHI +R+H IR+ + G + T D AD+L K L+R + ++R L+ Sbjct: 251 KFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNLQDAKSLTTAIDPSFSLTTDQS---PSTPQQYDDMRNILYREAIGSLMYAAIGTRPDVSYAVTALSQFMQNPGHPHWEAAKRVMRYLKGTKEEWLTYGG-DNANGMEGFSDADWGSS-DHRRSISGYVFLIDGGAVSWSSKKQPIVALSSTEAEYVAMTHAAKEVLWTRAFLGEIISPFDKPTTLYADNQSAITLAKDNLYHARTKHIAIRFHFIRDIVERGEVDIVYCPTADMAADVLTKPLTRPKMEKMRGLI 543
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Match: A0A090BBM5_HYAAE (RxLR effector candidate protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=A0A090BBM5_HYAAE) HSP 1 Score: 196 bits (497), Expect = 2.660e-57 Identity = 110/291 (37.80%), Postives = 164/291 (56.36%), Query Frame = 1 Query: 1 VSQQFRMKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPVEGKVKISAPESADKPSEPNREKSGNSTEYRGMVGSLMYTSTGTRPDIRYAVHQAAPRMEDPCREDFSTCKYIFRYLSTVSDLGITFGGKSHGHDLEGFADANWAEDVEDRKSITGYIFKLNGGAISWCSRKQE*VTWPSTETEYVAA*EAGKETVHLRELLGSTGFGCKGSTTLFGDNISAINLSEGSGTHCRTKHIGMRWHEIREWIREGVLASKCVQTGDQHADILRKGLSR 873 + ++F +KDLG L LG E+ R R I ++Q +I+ + +++G D C+ V TP + K++ P+ E YR +VG+LMY +T TRPDI +AV + A E + ++ K I +YL T D+ I F G + G L FADANWA D++ R+S TGY+F LNG AISW S++Q V STE EY++ A +E + LR LL + + +TT+F DN I L++ H RTKHI +++H +RE + V+A + T + AD K LS+ Sbjct: 17 IKEEFSIKDLGDLKYCLGIEIHRKRDERIIKMNQRAYIKRLAEKFGVDNCKDVHTPADSNAKLAKM--------PDEEVFVPKFPYRELVGALMYITTCTRPDIAHAVGEVAKYCERYNKSHWTAAKRIIKYLKTTQDMSIVFSGFNKGELLR-FADANWAGDLDTRRSTTGYVFFLNGSAISWNSKRQSTVATSSTEAEYMSLYSATQEAIWLRCLLKDLQYCAEVATTIFQDNQGCIALAKNPVYHSRTKHIDIKFHFLREKVASEVIALEFKPTEEMIADGFTKALSK 298 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11452.943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11452.943.1 >prot_H-paniculata_contig11452.943.1 ID=prot_H-paniculata_contig11452.943.1|Name=mRNA_H-paniculata_contig11452.943.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=185bp MKDLGSLSCVLGTEVRRDRPNGTITISQGIHIREVLKRYGFDECRGVPTPback to top mRNA from alignment at H-paniculata_contig11452:5392..6345- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11452.943.1 ID=mRNA_H-paniculata_contig11452.943.1|Name=mRNA_H-paniculata_contig11452.943.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=954bp|location=Sequence derived from alignment at H-paniculata_contig11452:5392..6345- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11452:5392..6345- >mRNA_H-paniculata_contig11452.943.1 ID=mRNA_H-paniculata_contig11452.943.1|Name=mRNA_H-paniculata_contig11452.943.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig11452:5392..6345- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |