mRNA_H-paniculata_contig1145.941.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1145.941.1
Unique NamemRNA_H-paniculata_contig1145.941.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1145.941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1145contigH-paniculata_contig1145:263..3898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size574
Cds size573
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1145.941.1prot_H-paniculata_contig1145.941.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1145 264..3898 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928852.3661416-CDS-H-paniculata_contig1145:263..4941622928852.3661416-CDS-H-paniculata_contig1145:263..494Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1145 264..494 -
1691480645.1581147-CDS-H-paniculata_contig1145:263..4941691480645.1581147-CDS-H-paniculata_contig1145:263..494Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1145 264..494 -
1622928852.3790438-CDS-H-paniculata_contig1145:1552..16811622928852.3790438-CDS-H-paniculata_contig1145:1552..1681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1145 1553..1681 -
1691480645.169738-CDS-H-paniculata_contig1145:1552..16811691480645.169738-CDS-H-paniculata_contig1145:1552..1681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1145 1553..1681 -
1622928852.3892984-CDS-H-paniculata_contig1145:3230..33641622928852.3892984-CDS-H-paniculata_contig1145:3230..3364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1145 3231..3364 -
1691480645.178204-CDS-H-paniculata_contig1145:3230..33641691480645.178204-CDS-H-paniculata_contig1145:3230..3364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1145 3231..3364 -
1622928852.4017124-CDS-H-paniculata_contig1145:3819..38981622928852.4017124-CDS-H-paniculata_contig1145:3819..3898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1145 3820..3898 -
1691480645.1857872-CDS-H-paniculata_contig1145:3819..38981691480645.1857872-CDS-H-paniculata_contig1145:3819..3898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1145 3820..3898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1145.941.1

>prot_H-paniculata_contig1145.941.1 ID=prot_H-paniculata_contig1145.941.1|Name=mRNA_H-paniculata_contig1145.941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp
QQQQQQQQQQQQQLGPGAGGGGVLALGSEEGSGFLGGDAGRTGAHHHRRP
SQLQQQQQQQLQLQHVQQQQQGQFYFAQQQQQQQQQQQQQQQQRGVSTSS
GGGGGTSGGVVMSMMAAATAATATAAAASGGSTAALGAGSVAGVLIGDGG
QLLRITPSPEHIVVSAGLSDTGISDSYASHHHQQQQHRFIQ
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mRNA from alignment at H-paniculata_contig1145:263..3898-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1145.941.1 ID=mRNA_H-paniculata_contig1145.941.1|Name=mRNA_H-paniculata_contig1145.941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3636bp|location=Sequence derived from alignment at H-paniculata_contig1145:263..3898- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCAACAACAACAACAACAACAACAGCAGCAGCAGCAGTTAGGGCCGGG
AGCAGGCGGTGGTGGTGTCCTAGCACTAGGTAAGCGTGTACATTAACTCT
CATGGCACCGGACCGTGTACAGTCCCTACACACAACGCCTTCGCGAAGGT
TGAGGGTTTGGGGGTAGCGACGTATATCTTTTGGTCGTACTCCTGATGCT
GGTCGTGCATCACCTCCTCCCCTCTTTTGTAGTCCCGGGACTGTCAGGTT
CTTTATTTTTCGTCTTTTGCCGTGAGAGGTCGCGATTTATTCTACTCTTT
GTTACATCATTGGAATGTGGTTGGAGCTCCCGGACTCGAACACCGGAGGA
TGCAAGGGAGGAAGAAGTAGGGGTGCCACAGTTGGTGGAGTTAGGGCTCT
ACTGCGCGTGAAATGTAGTTCTCAGAAAGATTCTTGGAAAATTCTTGGCC
TTCACTTTTTTGCCTGACTCCAAAGGTTCTTTCCTTGTTGAAGATAATGT
ATTTTTTAAGTGCTGGACATTTTCCATTTTGCAGGGTCGGAAGAAGGGAG
CGGGTTTTTGGGAGGAGATGCTGGGCGAACGGGGGCACATCATCATAGGC
GGCCATCGCAGCTACAACAGCAACAGCAGCAGCAGCTGCAACTGCAACAT
GTTCAGCAGCAGCAACAGGTTTTGTGTTTGTTGCCGTCTGAAAAACAAAA
AGGAAGAACGAAAACAAGAACAACCGGGTCGAACTCTTTTTAGGCGCTCT
CCCCAGACAGGGCGGGAGACCACTTGTTCGGTTGTACAATCGTCTCTTTA
AGTGTGCTGTTATTTTCCAGAATATGGCATATTTTACATGGAAAAACAAG
GCCCATGAAGCAGGTCCTAGAACACAGATTTTTTTTGTGTGTGAGCCTCC
AAGTGTGGAGGAGTGTAAGGAGACGAAAATATGTTTTGTGAATTTTGAGT
TGGTCCTGCATGACTTACTGTGAATTTCAGGTCCCGATGCCTAGTCCATC
TGCGCCAACTTGTCGACTCAAAATAACGACGTGTTCTACGATTTTTACGA
AATGTCATGAGCTGTGAAGAGGGATTTGTTTTATAGCGAGATGTTGTGGT
AGTGGCGGACTGGGGTCAGGATTTGTATTTCACTATGAGCCATACAGGAC
TAAATCGAAATTGAAACAATTCAATGTACTGTTTTTCTCGAACACCCTCA
TGAAGTCGTATGTGTGTGTGTGTGTTTTTTCTGTCGAAATGCTTGAGCAG
AAAATGCGTCGAAAAGAAAAGCCTAACAACGACCGACAGAACAAACACCA
GATTCAATCTCAGCTGGTTCAAAATTTGACCGGAACAGCAGCTGCACTGC
GGCCAAAACGTTGCTTGATAGCCCGGACGATAGCTCTTCATGAACCACGT
ACGATGTCTTTGGTTTATCGTCGAGTGTATCCAAAACTGATAATGTGCTT
GTGTGTAATTGGGACAAAGAGAACCCTTTCCCGCCCGTAATGGGACAAAG
AGATTTATGGAAAAGACAGGCGCTCGAATTTTCATCGTAGGTCATTGCTG
CCTTACCAATATCGAACCAATGGCACTAAATCAAAGCAATCCGTGGTTCG
GTAGATCATGGCTAAGCATTGAGGTGCTGGGCGTCTACTAAAATACGTGT
AGGTGGTGCTGGACAAGTTGAAGGCTCAGACACTCATTTCACAACGAACC
ATGGACAAGGATGGCGTGGGAATGAATCAAGTAGGGTCTGATTGACTTGA
ATCGTATTTTACACCGCTCTCGAGGGTTTGTTCGTTTCCGTGAAGTTTCC
AGAACACGTTTTCTTGTGTTCTTTTTCACAGGTGCGGACTAATTATTAAC
TCCGTTATTCGTTTTCGTATAGGACCTGTTGAAACAGGCGCTTCGGATGT
GCACGTGTGGCATTTAAAAAAAAAAAAAAATCGGATGTATATATATATAT
ATATATACATATACGTTTTTTTACACAGACCAGTTACCTTGTAAGAATAC
TATGTTATAAATACATGTAAAGTCTATTAACACCCAGCCGACAGTGTTTC
ATATCCAGCTGGAAGGGCATTTTTTGTTTTTTAACACCTGGAAGGCTGAG
GCAAAAACGTTTACCGAAGCTGGAAGGGCATGTACGTACTTTCCCCATCT
ACCTGACTGCCTCCCCACGTACCTACTTCACAACCCACTTGCCTTCCTGT
TTGCTCACCTATCCCAGGGCCAATTTTACTTTGCTCAGCAACAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAACAACAACAGAGGGGTGTTTCGACCTC
ATCAGGCGGTGGGGGCGGGACTAGCGGTGGTGTGGTCATGTCCATGGTGA
GTTTTTTCCGTAGTTGTTATCATAGTTATATCGTGCCCAAACAATTCACT
CACTTGTGTACGTAGCGCTTGAAGAAACACTGTTCTGAGAAACAATTACA
TGGGGTTATCAACACCGTTTTGTCCCTGAAGACTTATCATGTGGATGTAG
TGCAGTGTGTGGTATGTGAGCGGAAAAGTAACGAGCATCAAGCAGCAACC
ATGGTACCGACTGATGCATAGGGGTGATCATTAACATTAACAATGGCCGT
GAATGATTTTCCCCTTTACACCCTGACTTGGTGATACTGGCAATTTTTGA
GATACCCTTCCCCTCGGTTGAGGCAGCTAAATTGAGGGTGAAGCATTTTG
AGTCACATGTAGCAGCGTAGGAAAGTCATTGGCTATCGAAAATCGCTTTG
ATAGGAGCAAAGATCCGTCCTTCTTAGGACTTAAGGTCAATGTTCTTACA
ATTACGACATGCACAACAAGAGTACGCCCTCCCCCCCCCACAGGGGGGGG
GGGGGGGGGGGGGGGGTCGCCCTAGCATCCCCTGGTGAGGTTTCGATGGC
TTTCGTTTTCTGAGAACGTCGCTACCTGGCGGTGGTATCACAGTGTTGAC
AGGGACAATACCATGATGTCCTCCTAGGGGTGGAGGGAATATTTCGTTTT
TTCATTTTCCAAACAGTTACACCGTACAGGAGAAGATGACATGTACAGCA
TACGTGATTCGCCGGTCCCGGGAGGATATGACGGTACAGATAATGCATGA
AACACGTAAAGGTAGCTGGCATGGTTCTGCCCACAACAAGTGCGCAGTGC
TCGACGTCTGCTGCACGTGTTTTCTTCCTCAAATACAGCAGGGTTGAAAG
AGTCCCACCCTCGAGATGATCAACTACCAGGACTACATACGACTGTAAAA
GAAAGAAATCACCTGCGTTTCAGAATGTGTTGTCACATTGCATAGATTGT
TCACCCATGTTCTTTTTTAGCAGTATTCGGGACTCGTGGTGGATGTCCTT
TCTTAAAGCATGCAAGACGTACCTCTCCTCCCCTGAAAACATCGCAACAA
GCAGATGGCAGCGGCGACGGCGGCAACAGCAACGGCAGCAGCAGCGAGTG
GCGGGTCCACCGCTGCCCTCGGGGCGGGAAGCGTGGCAGGGGTGTTGATT
GGTGACGGCGGCCAACTATTACGAATAACGCCTTCCCCTGAGCACATTGT
TGTTTCGGCCGGCTTATCGGATACGGGAATATCGGACAGCTACGCGTCCC
ACCACCACCAGCAGCAGCAGCATCGATTTATTCAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1145:263..3898-

>mRNA_H-paniculata_contig1145.941.1 ID=mRNA_H-paniculata_contig1145.941.1|Name=mRNA_H-paniculata_contig1145.941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig1145:263..3898- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCAACAACAACAACAACAACAACAGCAGCAGCAGCAGTTAGGGCCGGG
AGCAGGCGGTGGTGGTGTCCTAGCACTAGCAGCAACAACAACAACAACAA
CAACAGCAGCAGCAGCAGTTAGGGCCGGGAGCAGGCGGTGGTGGTGTCCT
AGCACTAGGGTCGGAAGAAGGGAGCGGGTTTTTGGGAGGAGATGCTGGGC
GAACGGGGGCACATCATCATAGGCGGCCATCGCAGCTACAACAGCAACAG
CAGCAGCAGCTGCAACTGCAACATGTTCAGCAGCAGCAACAGGGTCGGAA
GAAGGGAGCGGGTTTTTGGGAGGAGATGCTGGGCGAACGGGGGCACATCA
TCATAGGCGGCCATCGCAGCTACAACAGCAACAGCAGCAGCAGCTGCAAC
TGCAACATGTTCAGCAGCAGCAACAGGGCCAATTTTACTTTGCTCAGCAA
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAGAGGGGTGT
TTCGACCTCATCAGGCGGTGGGGGCGGGACTAGCGGTGGTGTGGTCATGT
CCATGGGCCAATTTTACTTTGCTCAGCAACAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAACAACAACAGAGGGGTGTTTCGACCTCATCAGGCGGTGG
GGGCGGGACTAGCGGTGGTGTGGTCATGTCCATGATGGCAGCGGCGACGG
CGGCAACAGCAACGGCAGCAGCAGCGAGTGGCGGGTCCACCGCTGCCCTC
GGGGCGGGAAGCGTGGCAGGGGTGTTGATTGGTGACGGCGGCCAACTATT
ACGAATAACGCCTTCCCCTGAGCACATTGTTGTTTCGGCCGGCTTATCGG
ATACGGGAATATCGGACAGCTACGCGTCCCACCACCACCAGCAGCAGCAG
CATCGATTTATTCAGATGGCAGCGGCGACGGCGGCAACAGCAACGGCAGC
AGCAGCGAGTGGCGGGTCCACCGCTGCCCTCGGGGCGGGAAGCGTGGCAG
GGGTGTTGATTGGTGACGGCGGCCAACTATTACGAATAACGCCTTCCCCT
GAGCACATTGTTGTTTCGGCCGGCTTATCGGATACGGGAATATCGGACAG
CTACGCGTCCCACCACCACCAGCAGCAGCAGCATCGATTTATTCAG
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