mRNA_H-paniculata_contig11444.940.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11444.940.1
Unique NamemRNA_H-paniculata_contig11444.940.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 2.410e-72
Identity = 154/394 (39.09%), Postives = 227/394 (57.61%), Query Frame = 1
Query:  550 PQRARGLRTTW*NVWIRMITGA----KARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFHWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASIIWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSKEVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTVCQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRSDISNAVREVARHNNNPGPEHWKAVV*ILAYLAGSRTDGITFKRGGGMGVSVCRL*VYADSSYATKTDDIWLVSRDVARVGESTMSQFSSTQQN-AISFVHGSRVRCDGGRRQGRHVRSECSWI 1716
            P+  R + + W   W     G     KARL+AR   Q+ ++DY H+ +  P+ A++K   AVANE G+++ HWDV QA+     +E++  L+LP  A     S ++    R+  GL+++   W    A+ L E GF+Q   DPC+F ++ D  V +IIV++VDD+ V GS E C+ L   LN+  P  NLGE +W  GCAI+++ E GT +IS TA+ID++ +R  V STS IP  P   L  + ++EE   WP REAIGS+MW++   R D+S AVR VARH + P   HW A+  IL YL G+R  GIT++RG G+G++V     Y D+SYA  T+D   VS     VG + +S  S TQ   ++S      +    G ++   VR+  S++
Sbjct:  776 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVF-LKLP--AGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAV-----YVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFV 1160          
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 3.600e-72
Identity = 154/394 (39.09%), Postives = 228/394 (57.87%), Query Frame = 1
Query:  550 PQRARGLRTTW*NVWIRMITGA----KARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFHWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASIIWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSKEVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTVCQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRSDISNAVREVARHNNNPGPEHWKAVV*ILAYLAGSRTDGITFKRGGGMGVSVCRL*VYADSSYATKTDDIWLVSRDVARVGESTMSQFSSTQQN-AISFVHGSRVRCDGGRRQGRHVRSECSWI 1716
            P+  R + + W   W     G     KARL+AR   Q+ ++DY H+ +  P+ A++K   AVANE G+++ HWDV QA+     +E++  L+LP  A     S ++    R+  GL+++   W    A+ L E GF+Q   DPC+F ++ D+ V +IIV++VDD+ V GS E C+ L   LN+  P  NLGE +W  GCAI+++ E GT +IS TA+ID++ +R  V STS IP  P   L  + ++EE   WP REAIGS+MW++   R D+S AVR VARH + P   HW A+  IL YL G+R  GIT++RG G+G++V     Y D+SYA  T+D   VS     VG + +S  S TQ   ++S      +    G ++   VR+  S++
Sbjct: 1175 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVF-LKLP--AGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAV-----YVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFV 1559          
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 4.750e-72
Identity = 154/394 (39.09%), Postives = 227/394 (57.61%), Query Frame = 1
Query:  550 PQRARGLRTTW*NVWIRMITGA----KARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFHWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASIIWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSKEVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTVCQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRSDISNAVREVARHNNNPGPEHWKAVV*ILAYLAGSRTDGITFKRGGGMGVSVCRL*VYADSSYATKTDDIWLVSRDVARVGESTMSQFSSTQQN-AISFVHGSRVRCDGGRRQGRHVRSECSWI 1716
            P+  R + + W   W     G     KARL+AR   Q+ ++DY H+ +  P+ A++K   AVANE G+++ HWDV QA+     +E++  L+LP  A     S ++    R+  GL+++   W    A+ L E GF+Q   DPC+F ++ D  V +IIV++VDD+ V GS E C+ L   LN+  P  NLGE +W  GCAI+++ E GT +IS TA+ID++ +R  V STS IP  P   L  + ++EE   WP REAIGS+MW++   R D+S AVR VARH + P   HW A+  IL YL G+R  GIT++RG G+G++V     Y D+SYA  T+D   VS     VG + +S  S TQ   ++S      +    G ++   VR+  S++
Sbjct: 1155 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVF-LKLP--AGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAV-----YVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFV 1539          
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 4.980e-72
Identity = 154/394 (39.09%), Postives = 227/394 (57.61%), Query Frame = 1
Query:  550 PQRARGLRTTW*NVWIRMITGA----KARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFHWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASIIWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSKEVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTVCQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRSDISNAVREVARHNNNPGPEHWKAVV*ILAYLAGSRTDGITFKRGGGMGVSVCRL*VYADSSYATKTDDIWLVSRDVARVGESTMSQFSSTQQN-AISFVHGSRVRCDGGRRQGRHVRSECSWI 1716
            P+  R + + W   W     G     KARL+AR   Q+ ++DY H+ +  P+ A++K   AVANE G+++ HWDV QA+     +E++  L+LP  A     S ++    R+  GL+++   W    A+ L E GF+Q   DPC+F ++ D  V +IIV++VDD+ V GS E C+ L   LN+  P  NLGE +W  GCAI+++ E GT +IS TA+ID++ +R  V STS IP  P   L  + ++EE   WP REAIGS+MW++   R D+S AVR VARH + P   HW A+  IL YL G+R  GIT++RG G+G++V     Y D+SYA  T+D   VS     VG + +S  S TQ   ++S      +    G ++   VR+  S++
Sbjct: 1318 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVF-LKLP--AGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAV-----YVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFV 1702          
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 9.750e-72
Identity = 148/362 (40.88%), Postives = 213/362 (58.84%), Query Frame = 1
Query:  550 PQRARGLRTTW*NVWIRMITGA----KARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFHWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASIIWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSKEVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTVCQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRSDISNAVREVARHNNNPGPEHWKAVV*ILAYLAGSRTDGITFKRGGGMGVSVCRL*VYADSSYATKTDDIWLVSRDVARVGESTMSQFSSTQ 1623
            P+  R + + W   W     G     KARL+AR   Q+ ++DY H+ +  P+ A++K   AVANE G+++ HWDV QA+     +E++  L+LP  A     S  +    R+  GL+++   W    A+ L E GF+Q   DPC+F ++ D  V +IIV++VDD+ V GS E C+ L   L++  P  NL E +W  GCAI+++ ETGT +IS TA+ID++ +R  V STS IP  P   L  + D+E+   WP REAIGS+MW++   R D+S AVR VARH + P   HW A+  IL YL G+R  GIT++RG G+G++V     Y D+SYA  T+D   VS     VG + +S  S TQ
Sbjct:  330 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVF-LKLP--AGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAV-----YVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQ 682          
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Match: A0A6H5JJY0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY0_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 7.290e-69
Identity = 144/368 (39.13%), Postives = 215/368 (58.42%), Query Frame = 1
Query:  616 KARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFHWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASIIWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSKEVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTVCQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRSDISNAVREVARHNNNPGPEHWKAVV*ILAYLAGSRTDGITFKRGGGMGVSVCRL*VYADSSYATKTDDIWLVSRDVARVGESTMSQFSSTQQN-AISFVHGSRVRCDGGRRQGRHVRSECSWI 1716
            KARL+AR   Q+ ++DY H+ +  P+ A++K   AVANE G+++ HWDV QA      +E++  L+LP  A     S ++V    +  GL+++   W  L A+ L E GF++   D C+F ++ D  V +IIV++ DD+ V GS E C+ L   LN+  P  NLGE +W  GCAI+++ E GT +IS TA+ID++ +R  V STS IP  P   L    ++EE   WP REAIGS+MW++   R D+S AVR  ARH ++P   HW A+  +L YL G+R  GIT++RG G+G++V     Y D+SYA  T+D   VS     VG + +   S TQ   ++S      +    G ++   VR+  S++
Sbjct:  688 KARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAHTHATLDEEVF-LKLP--AGCGDRSYKIVKAEPAIYGLKQSERQWGYLAADTLVENGFEECKADRCVFRKMVDEVVVMIIVIYADDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMLKRFDVQSTSRIPATPGADLGPIREDEEGGEWPVREAIGSMMWMSTFSRPDVSFAVRAAARHAHSPAERHWDAIQTVLGYLKGTRDLGITYQRGSGLGLAV-----YVDASYAD-TEDRRSVSGLATTVGGTVVGHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFV 1046          
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 1.880e-67
Identity = 146/394 (37.06%), Postives = 218/394 (55.33%), Query Frame = 1
Query:  550 PQRARGLRTTW*NVWIRMITGA----KARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFHWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASIIWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSKEVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTVCQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRSDISNAVREVARHNNNPGPEHWKAVV*ILAYLAGSRTDGITFKRGGGMGVSVCRL*VYADSSYATKTDDIWLVSRDVARVGESTMSQFSSTQQN-AISFVHGSRVRCDGGRRQGRHVRSECSWI 1716
            P+  R + + W   W     G      ARL+AR   Q+ ++DY H+ +  P+ A++K   AVANE G+++ HWDV QA+     +E+                 ++V   R+  GL+++   +    A+   E GF+Q   DPC+F ++ D  V +IIV++VDD+ V GS E C+ L   LN+  P  NLGE +W  GCAI+++ E GT +IS TA+ID++ +R  V STS IP  P   L  + ++EE   WP REAIGS+MW++   R D+S AVR V RH + P   HW A+  IL YL G+R  GIT++RG G+G++V     Y D+SYA  T+D   VS     VG + +S  S TQ   ++S      +    G ++   VR+  S++
Sbjct:  726 PEGRRPVSSKWCFSWKTNKEGKIDTFNARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATQDEEQ----------------KIVKAERAIYGLKQSGRQFGYHAADTQVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKMFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVVRHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAV-----YVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFV 1097          
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 1.160e-66
Identity = 144/394 (36.55%), Postives = 207/394 (52.54%), Query Frame = 1
Query:  550 PQRARGLRTTW*NVWIRMITGA----KARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFHWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASIIWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSKEVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTVCQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRSDISNAVREVARHNNNPGPEHWKAVV*ILAYLAGSRTDGITFKRGGGMGVSVCRL*VYADSSYATKTDDIWLVSRDVARVGESTMSQFSSTQQN-AISFVHGSRVRCDGGRRQGRHVRSECSWI 1716
            P+  R + + W   W     G     KARL+AR   Q+ ++DY H+ +  P+ A++K   AVA+E G+++ HWDV QA                                            W    A+ L E GF+Q   DPC+F ++ D  V +IIV++VDD+ V GS E C+ L   LN+  P  NLGE +W  GCAI+++ E GT +IS TA+ID++ +R  V STS IP  P   L  + ++EE   WP REAIGS+MW++   R D+S AVR VARH + P   HW A+  IL YL G+R  GIT++RG G+G++V     Y D+SYA  T+D   VS     VG + +S  S TQ   ++S      +    G ++   VR+  S++
Sbjct:   39 PEGRRPVSSRWCFSWKTNKEGKVENFKARLVARGFSQIPNVDYFHSSSPGPSSASIKLMLAVADEKGINLNHWDVKQAQ-------------------------------------------WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPQREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAV-----YVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKESLFVRAVLSFV 383          
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 1.850e-66
Identity = 139/368 (37.77%), Postives = 213/368 (57.88%), Query Frame = 1
Query:  616 KARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFHWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASIIWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSKEVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTVCQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRSDISNAVREVARHNNNPGPEHWKAVV*ILAYLAGSRTDGITFKRGGGMGVSVCRL*VYADSSYATKTDDIWLVSRDVARVGESTMSQFSSTQQN-AISFVHGSRVRCDGGRRQGRHVRSECSWI 1716
            KAR +AR   Q+  +    + +  P+ A++K   AVANE G+++ HWDV QA+     +E++  L+LP  A     S ++    R+  GL+++   W    A+ L E GF+Q   DPC+F ++ D  V +IIV++VDD+ V GS E C+ L   LN+  P  NLGE +W  GCAI+++ + GT +IS TA+ID++ +R  V STS IP  P   L  + ++++   WP REA+GS+MW++   R D+S AVR VARH + P   HW A+  IL YL G+R  GIT++RG G+G++V     Y D+ YA  T+D   VSR    VG + +S  S  +   ++S      +    G ++   VR+  S++
Sbjct:  393 KARRVARGFSQITSIISIPSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVF-LKLP--AGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAV-----YVDARYAD-TEDRRSVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFV 751          
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 8.940e-66
Identity = 145/362 (40.06%), Postives = 208/362 (57.46%), Query Frame = 1
Query:  550 PQRARGLRTTW*NVWIRMITGA----KARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFHWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASIIWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSKEVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTVCQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRSDISNAVREVARHNNNPGPEHWKAVV*ILAYLAGSRTDGITFKRGGGMGVSVCRL*VYADSSYATKTDDIWLVSRDVARVGESTMSQFSSTQ 1623
            P+  R + + W   W     G     KAR++AR   Q+ ++DY  + +  P+ A++    AVANE G+++ HWDV QA      +E++   RLP  A     S ++V   R+  GL+++   W    A+ L E GF+Q   DPC+F ++ D  V +IIV++VDD+ V GS E C+ L   LN+  P  NLGE +W  GCAI+++ E GT +IS TA+ID++ +R  V STS IP  P   L  + ++EE   WP R+AIGS+MW++   R D+S A R VARH + P   HW A+  IL YL G+R  GIT++RG G+G SV     Y D+SYA  T+D    S     VG + +S  S TQ
Sbjct:  885 PEGRRPVSSKWCFSWKTNKEGKIDKFKARVVARGFSQLPNVDYFRSSSPCPSSASIMLMLAVANEKGMNLNHWDVKQASPHATLDEEVFP-RLP--AGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGPSV-----YVDASYAD-TEDSRSGSGLATTVGGTLVSHGSKTQ 1237          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSG8_9PHAE2.410e-7239.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JN00_9PHAE3.600e-7239.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZQ8_9PHAE4.750e-7239.09Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE4.980e-7239.09Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JC10_9PHAE9.750e-7240.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJY0_9PHAE7.290e-6939.13CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5JRE9_9PHAE1.880e-6737.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVD4_9PHAE1.160e-6636.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQN6_9PHAE1.850e-6637.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQW4_9PHAE8.940e-6640.06Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11444contigH-paniculata_contig11444:5676..7491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score117.5
Seed ortholog evalue1e-23
Seed eggNOG ortholog7070.TC002224-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SH01@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size1816
Cds size828
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11444.940.1prot_H-paniculata_contig11444.940.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11444 6276..7103 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928852.3146436-UTR-H-paniculata_contig11444:5675..62751622928852.3146436-UTR-H-paniculata_contig11444:5675..6275Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11444 5676..6275 +
1691480645.131973-UTR-H-paniculata_contig11444:5675..62751691480645.131973-UTR-H-paniculata_contig11444:5675..6275Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11444 5676..6275 +
1622928852.3341258-UTR-H-paniculata_contig11444:7103..74911622928852.3341258-UTR-H-paniculata_contig11444:7103..7491Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11444 7104..7491 +
1691480645.1493583-UTR-H-paniculata_contig11444:7103..74911691480645.1493583-UTR-H-paniculata_contig11444:7103..7491Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11444 7104..7491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928852.324228-CDS-H-paniculata_contig11444:6275..71031622928852.324228-CDS-H-paniculata_contig11444:6275..7103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11444 6276..7103 +
1691480645.1413083-CDS-H-paniculata_contig11444:6275..71031691480645.1413083-CDS-H-paniculata_contig11444:6275..7103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11444 6276..7103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11444.940.1

>prot_H-paniculata_contig11444.940.1 ID=prot_H-paniculata_contig11444.940.1|Name=mRNA_H-paniculata_contig11444.940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=276bp
MITGAKARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIF
HWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASI
IWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSK
EVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTV
CQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRS
DISNAVREVARHNNNPGPEHWKAVV*
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mRNA from alignment at H-paniculata_contig11444:5676..7491+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11444.940.1 ID=mRNA_H-paniculata_contig11444.940.1|Name=mRNA_H-paniculata_contig11444.940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1816bp|location=Sequence derived from alignment at H-paniculata_contig11444:5676..7491+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAAAGTGGCATCCTCCGAAGGACTTACTTATCCACTGGTTCGGCTATG TCGGTGTGCACCAGCTCCAACAGCTCGGTCGTCCGCTCTTCTCGATAAAT TTTCACAGGCTTGTTCAACGCTTTCCTCTTCTCACACGCCGAGCAGACAC CGAGCTTCCCGCTTAACCATATACCTTGTTGCCGCGCGACGTGGAAAGGT CTCAAACATGCCCAAGTCGCTCGTGTAGTAACTTGGCGTCCACCACCTGT TGCCTCTTCTCATTTTTTCGTCGTGGTGCAGTCGTTGCTGAGTAATCGAA GAACCTTCACTTGTTTTCCGACGGCCCATTATGCGGTTTGCTTCTCCACT TCGTCTCCCACTATCATACGCAATGAAAACTTCTTCCGCGATGTGTGTTC GAACGGGATCGTTATCCCATCGTAATACAACCGTCTCCGTTCCGAACCAA AATAAAGTACATTGCAGAAGGCGATACGCATGGCTCCTTCCGCAGTCCAA ATTAAACCTTCCACGTCTCCTTGCCCCCTCTACATCCAGCTCCCCCTTGC CACAGCGGGCAAGGGGGTTACGTACGACCTGGTGAAACGTTTGGATTCGC ATGATAACGGGTGCAAAGGCTAGACTAATAGCTCGTGAAGACAAGCAAGT TCATCATCTAGACTATGATCACACATTCACATCAACACCAACAATTGCTA CCGTAAAAACAGACGCAGCAGTAGCAAATGAGCTAGGCTTGAGCATATTT CATTGGGATGTATCACAAGCATTTGTGCAGGGAGAGTCGGAAGAAGACAT GATCTGTTTACGTTTGCCTAAGGTTGCGGAGCGGCTTCAGGCTTCAGGCA GAGTTGTAAACCTAAGTCGATCGACAAACGGACTTGAAAAGGCATCGATA ATATGGCACACTCTACCTGCCAACATTCTCAAAGAGAAAGGATTCCAACA ACGGCTCACCGACCCATGCTTGTTCCACAGGATTTTTGATAGGCGAGTCG AGATTATAATTGTCCTACATGTAGATGACATGAAGGTAATCGGCAGCAAG GAAGTTTGTGACAGGCTGTATGAAGACCTCAACCAGCATTCCCCCCAAAA CAATCTGGGAGAGTTAAAGTGGTGCAAGGGATGTGCTATCGATCAAAACA GCGAGACCGGTACTACAAAAATATCGGGGACTGCTTTCATTGATACAGTT TGCCAGCGTATCAGTGTAACCTCAACGAGCCTAATTCCCCCTATTCCCAC CACCGTTCTCAGGTCAAGAGAAGATGAAGAGGAACAGTGCAGCTGGCCGT GCAGAGAAGCGATCGGTAGTTTAATGTGGCTAGCCAATATTATCAGATCG GACATAAGCAACGCAGTTCGGGAAGTAGCTCGGCACAACAACAACCCTGG TCCTGAACACTGGAAAGCGGTGGTGTAGATTTTGGCCTACCTCGCGGGGA GTAGGACCGACGGGATTACTTTTAAGCGGGGAGGAGGAATGGGTGTAAGT GTATGCCGACTCTAAGTGTATGCCGACTCTAGCTACGCTACTAAGACTGA TGACATATGGTTAGTGTCACGAGATGTGGCCAGAGTCGGAGAGTCCACCA TGAGTCAATTCTCCAGCACGCAACAAAACGCTATCTCTTTCGTCCACGGA AGCAGAGTACGTTGCGATGGGGGAAGGCGTCAAGGAAGACATGTTCGTTC GGAATGTTCTTGGATTCATGGTTCCCAACATTGAGCTGGGGCCAATCAAT GTTCTGGAGGACAACGAGGGGTTCGTTCAACTAGCTGAAAACCTCTTAGT TCGACGCGGACCAAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig11444:5676..7491+

>mRNA_H-paniculata_contig11444.940.1 ID=mRNA_H-paniculata_contig11444.940.1|Name=mRNA_H-paniculata_contig11444.940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1656bp|location=Sequence derived from alignment at H-paniculata_contig11444:5676..7491+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATAACGGGTGCAAAGGCTAGACTAATAGCTCGTGAAGACAAGCAAGT
TCATCATCTAGACTATGATCACACATTCACATCAACACCAACAATTGCTA
CCGTAAAAACAGACGCAGCAGTAGCAAATGAGCTAGGCTTGAGCATATTT
CATTGGGATGTATCACAAGCATTTGTGCAGGGAGAGTCGGAAGAAGACAT
GATCTGTTTACGTTTGCCTAAGGTTGCGGAGCGGCTTCAGGCTTCAGGCA
GAGTTGTAAACCTAAGTCGATCGACAAACGGACTTGAAAAGGCATCGATA
ATATGGCACACTCTACCTGCCAACATTCTCAAAGAGAAAGGATTCCAACA
ACGGCTCACCGACCCATGCTTGTTCCACAGGATTTTTGATAGGCGAGTCG
AGATTATAATTGTCCTACATGTAGATGACATGAAGGTAATCGGCAGCAAG
GAAGTTTGTGACAGGCTGTATGAAGACCTCAACCAGCATTCCCCCCAAAA
CAATCTGGGAGAGTTAAAGTGGTGCAAGGGATGTGCTATCGATCAAAACA
GCGAGACCGGTACTACAAAAATATCGGGGACTGCTTTCATTGATACAGTT
TGCCAGCGTATCAGTGTAACCTCAACGAGCCTAATTCCCCCTATTCCCAC
CACCGTTCTCAGGTCAAGAGAAGATGAAGAGGAACAGTGCAGCTGGCCGT
GCAGAGAAGCGATCGGTAGTTTAATGTGGCTAGCCAATATTATCAGATCG
GACATAAGCAACGCAGTTCGGGAAGTAGCTCGGCACAACAACAACCCTGG
TCCTGAACACTGGAAAGCGGTGGTGTAGATGATAACGGGTGCAAAGGCTA
GACTAATAGCTCGTGAAGACAAGCAAGTTCATCATCTAGACTATGATCAC
ACATTCACATCAACACCAACAATTGCTACCGTAAAAACAGACGCAGCAGT
AGCAAATGAGCTAGGCTTGAGCATATTTCATTGGGATGTATCACAAGCAT
TTGTGCAGGGAGAGTCGGAAGAAGACATGATCTGTTTACGTTTGCCTAAG
GTTGCGGAGCGGCTTCAGGCTTCAGGCAGAGTTGTAAACCTAAGTCGATC
GACAAACGGACTTGAAAAGGCATCGATAATATGGCACACTCTACCTGCCA
ACATTCTCAAAGAGAAAGGATTCCAACAACGGCTCACCGACCCATGCTTG
TTCCACAGGATTTTTGATAGGCGAGTCGAGATTATAATTGTCCTACATGT
AGATGACATGAAGGTAATCGGCAGCAAGGAAGTTTGTGACAGGCTGTATG
AAGACCTCAACCAGCATTCCCCCCAAAACAATCTGGGAGAGTTAAAGTGG
TGCAAGGGATGTGCTATCGATCAAAACAGCGAGACCGGTACTACAAAAAT
ATCGGGGACTGCTTTCATTGATACAGTTTGCCAGCGTATCAGTGTAACCT
CAACGAGCCTAATTCCCCCTATTCCCACCACCGTTCTCAGGTCAAGAGAA
GATGAAGAGGAACAGTGCAGCTGGCCGTGCAGAGAAGCGATCGGTAGTTT
AATGTGGCTAGCCAATATTATCAGATCGGACATAAGCAACGCAGTTCGGG
AAGTAGCTCGGCACAACAACAACCCTGGTCCTGAACACTGGAAAGCGGTG
GTGTAG
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