mRNA_H-paniculata_contig11444.940.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 263 bits (671), Expect = 2.410e-72 Identity = 154/394 (39.09%), Postives = 227/394 (57.61%), Query Frame = 1 Query: 550 PQRARGLRTTW*NVWIRMITGA----KARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFHWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASIIWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSKEVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTVCQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRSDISNAVREVARHNNNPGPEHWKAVV*ILAYLAGSRTDGITFKRGGGMGVSVCRL*VYADSSYATKTDDIWLVSRDVARVGESTMSQFSSTQQN-AISFVHGSRVRCDGGRRQGRHVRSECSWI 1716 P+ R + + W W G KARL+AR Q+ ++DY H+ + P+ A++K AVANE G+++ HWDV QA+ +E++ L+LP A S ++ R+ GL+++ W A+ L E GF+Q DPC+F ++ D V +IIV++VDD+ V GS E C+ L LN+ P NLGE +W GCAI+++ E GT +IS TA+ID++ +R V STS IP P L + ++EE WP REAIGS+MW++ R D+S AVR VARH + P HW A+ IL YL G+R GIT++RG G+G++V Y D+SYA T+D VS VG + +S S TQ ++S + G ++ VR+ S++ Sbjct: 776 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVF-LKLP--AGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAV-----YVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFV 1160
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 263 bits (672), Expect = 3.600e-72 Identity = 154/394 (39.09%), Postives = 228/394 (57.87%), Query Frame = 1 Query: 550 PQRARGLRTTW*NVWIRMITGA----KARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFHWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASIIWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSKEVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTVCQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRSDISNAVREVARHNNNPGPEHWKAVV*ILAYLAGSRTDGITFKRGGGMGVSVCRL*VYADSSYATKTDDIWLVSRDVARVGESTMSQFSSTQQN-AISFVHGSRVRCDGGRRQGRHVRSECSWI 1716 P+ R + + W W G KARL+AR Q+ ++DY H+ + P+ A++K AVANE G+++ HWDV QA+ +E++ L+LP A S ++ R+ GL+++ W A+ L E GF+Q DPC+F ++ D+ V +IIV++VDD+ V GS E C+ L LN+ P NLGE +W GCAI+++ E GT +IS TA+ID++ +R V STS IP P L + ++EE WP REAIGS+MW++ R D+S AVR VARH + P HW A+ IL YL G+R GIT++RG G+G++V Y D+SYA T+D VS VG + +S S TQ ++S + G ++ VR+ S++ Sbjct: 1175 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVF-LKLP--AGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAV-----YVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFV 1559
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 263 bits (671), Expect = 4.750e-72 Identity = 154/394 (39.09%), Postives = 227/394 (57.61%), Query Frame = 1 Query: 550 PQRARGLRTTW*NVWIRMITGA----KARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFHWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASIIWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSKEVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTVCQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRSDISNAVREVARHNNNPGPEHWKAVV*ILAYLAGSRTDGITFKRGGGMGVSVCRL*VYADSSYATKTDDIWLVSRDVARVGESTMSQFSSTQQN-AISFVHGSRVRCDGGRRQGRHVRSECSWI 1716 P+ R + + W W G KARL+AR Q+ ++DY H+ + P+ A++K AVANE G+++ HWDV QA+ +E++ L+LP A S ++ R+ GL+++ W A+ L E GF+Q DPC+F ++ D V +IIV++VDD+ V GS E C+ L LN+ P NLGE +W GCAI+++ E GT +IS TA+ID++ +R V STS IP P L + ++EE WP REAIGS+MW++ R D+S AVR VARH + P HW A+ IL YL G+R GIT++RG G+G++V Y D+SYA T+D VS VG + +S S TQ ++S + G ++ VR+ S++ Sbjct: 1155 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVF-LKLP--AGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAV-----YVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFV 1539
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 263 bits (671), Expect = 4.980e-72 Identity = 154/394 (39.09%), Postives = 227/394 (57.61%), Query Frame = 1 Query: 550 PQRARGLRTTW*NVWIRMITGA----KARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFHWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASIIWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSKEVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTVCQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRSDISNAVREVARHNNNPGPEHWKAVV*ILAYLAGSRTDGITFKRGGGMGVSVCRL*VYADSSYATKTDDIWLVSRDVARVGESTMSQFSSTQQN-AISFVHGSRVRCDGGRRQGRHVRSECSWI 1716 P+ R + + W W G KARL+AR Q+ ++DY H+ + P+ A++K AVANE G+++ HWDV QA+ +E++ L+LP A S ++ R+ GL+++ W A+ L E GF+Q DPC+F ++ D V +IIV++VDD+ V GS E C+ L LN+ P NLGE +W GCAI+++ E GT +IS TA+ID++ +R V STS IP P L + ++EE WP REAIGS+MW++ R D+S AVR VARH + P HW A+ IL YL G+R GIT++RG G+G++V Y D+SYA T+D VS VG + +S S TQ ++S + G ++ VR+ S++ Sbjct: 1318 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVF-LKLP--AGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAV-----YVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFV 1702
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 255 bits (652), Expect = 9.750e-72 Identity = 148/362 (40.88%), Postives = 213/362 (58.84%), Query Frame = 1 Query: 550 PQRARGLRTTW*NVWIRMITGA----KARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFHWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASIIWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSKEVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTVCQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRSDISNAVREVARHNNNPGPEHWKAVV*ILAYLAGSRTDGITFKRGGGMGVSVCRL*VYADSSYATKTDDIWLVSRDVARVGESTMSQFSSTQ 1623 P+ R + + W W G KARL+AR Q+ ++DY H+ + P+ A++K AVANE G+++ HWDV QA+ +E++ L+LP A S + R+ GL+++ W A+ L E GF+Q DPC+F ++ D V +IIV++VDD+ V GS E C+ L L++ P NL E +W GCAI+++ ETGT +IS TA+ID++ +R V STS IP P L + D+E+ WP REAIGS+MW++ R D+S AVR VARH + P HW A+ IL YL G+R GIT++RG G+G++V Y D+SYA T+D VS VG + +S S TQ Sbjct: 330 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVF-LKLP--AGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAV-----YVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQ 682
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Match: A0A6H5JJY0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY0_9PHAE) HSP 1 Score: 251 bits (642), Expect = 7.290e-69 Identity = 144/368 (39.13%), Postives = 215/368 (58.42%), Query Frame = 1 Query: 616 KARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFHWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASIIWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSKEVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTVCQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRSDISNAVREVARHNNNPGPEHWKAVV*ILAYLAGSRTDGITFKRGGGMGVSVCRL*VYADSSYATKTDDIWLVSRDVARVGESTMSQFSSTQQN-AISFVHGSRVRCDGGRRQGRHVRSECSWI 1716 KARL+AR Q+ ++DY H+ + P+ A++K AVANE G+++ HWDV QA +E++ L+LP A S ++V + GL+++ W L A+ L E GF++ D C+F ++ D V +IIV++ DD+ V GS E C+ L LN+ P NLGE +W GCAI+++ E GT +IS TA+ID++ +R V STS IP P L ++EE WP REAIGS+MW++ R D+S AVR ARH ++P HW A+ +L YL G+R GIT++RG G+G++V Y D+SYA T+D VS VG + + S TQ ++S + G ++ VR+ S++ Sbjct: 688 KARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAHTHATLDEEVF-LKLP--AGCGDRSYKIVKAEPAIYGLKQSERQWGYLAADTLVENGFEECKADRCVFRKMVDEVVVMIIVIYADDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMLKRFDVQSTSRIPATPGADLGPIREDEEGGEWPVREAIGSMMWMSTFSRPDVSFAVRAAARHAHSPAERHWDAIQTVLGYLKGTRDLGITYQRGSGLGLAV-----YVDASYAD-TEDRRSVSGLATTVGGTVVGHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFV 1046
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE) HSP 1 Score: 249 bits (635), Expect = 1.880e-67 Identity = 146/394 (37.06%), Postives = 218/394 (55.33%), Query Frame = 1 Query: 550 PQRARGLRTTW*NVWIRMITGA----KARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFHWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASIIWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSKEVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTVCQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRSDISNAVREVARHNNNPGPEHWKAVV*ILAYLAGSRTDGITFKRGGGMGVSVCRL*VYADSSYATKTDDIWLVSRDVARVGESTMSQFSSTQQN-AISFVHGSRVRCDGGRRQGRHVRSECSWI 1716 P+ R + + W W G ARL+AR Q+ ++DY H+ + P+ A++K AVANE G+++ HWDV QA+ +E+ ++V R+ GL+++ + A+ E GF+Q DPC+F ++ D V +IIV++VDD+ V GS E C+ L LN+ P NLGE +W GCAI+++ E GT +IS TA+ID++ +R V STS IP P L + ++EE WP REAIGS+MW++ R D+S AVR V RH + P HW A+ IL YL G+R GIT++RG G+G++V Y D+SYA T+D VS VG + +S S TQ ++S + G ++ VR+ S++ Sbjct: 726 PEGRRPVSSKWCFSWKTNKEGKIDTFNARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATQDEEQ----------------KIVKAERAIYGLKQSGRQFGYHAADTQVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKMFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVVRHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAV-----YVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFV 1097
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE) HSP 1 Score: 233 bits (595), Expect = 1.160e-66 Identity = 144/394 (36.55%), Postives = 207/394 (52.54%), Query Frame = 1 Query: 550 PQRARGLRTTW*NVWIRMITGA----KARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFHWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASIIWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSKEVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTVCQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRSDISNAVREVARHNNNPGPEHWKAVV*ILAYLAGSRTDGITFKRGGGMGVSVCRL*VYADSSYATKTDDIWLVSRDVARVGESTMSQFSSTQQN-AISFVHGSRVRCDGGRRQGRHVRSECSWI 1716 P+ R + + W W G KARL+AR Q+ ++DY H+ + P+ A++K AVA+E G+++ HWDV QA W A+ L E GF+Q DPC+F ++ D V +IIV++VDD+ V GS E C+ L LN+ P NLGE +W GCAI+++ E GT +IS TA+ID++ +R V STS IP P L + ++EE WP REAIGS+MW++ R D+S AVR VARH + P HW A+ IL YL G+R GIT++RG G+G++V Y D+SYA T+D VS VG + +S S TQ ++S + G ++ VR+ S++ Sbjct: 39 PEGRRPVSSRWCFSWKTNKEGKVENFKARLVARGFSQIPNVDYFHSSSPGPSSASIKLMLAVADEKGINLNHWDVKQAQ-------------------------------------------WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPQREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAV-----YVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKESLFVRAVLSFV 383
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE) HSP 1 Score: 242 bits (617), Expect = 1.850e-66 Identity = 139/368 (37.77%), Postives = 213/368 (57.88%), Query Frame = 1 Query: 616 KARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFHWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASIIWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSKEVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTVCQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRSDISNAVREVARHNNNPGPEHWKAVV*ILAYLAGSRTDGITFKRGGGMGVSVCRL*VYADSSYATKTDDIWLVSRDVARVGESTMSQFSSTQQN-AISFVHGSRVRCDGGRRQGRHVRSECSWI 1716 KAR +AR Q+ + + + P+ A++K AVANE G+++ HWDV QA+ +E++ L+LP A S ++ R+ GL+++ W A+ L E GF+Q DPC+F ++ D V +IIV++VDD+ V GS E C+ L LN+ P NLGE +W GCAI+++ + GT +IS TA+ID++ +R V STS IP P L + ++++ WP REA+GS+MW++ R D+S AVR VARH + P HW A+ IL YL G+R GIT++RG G+G++V Y D+ YA T+D VSR VG + +S S + ++S + G ++ VR+ S++ Sbjct: 393 KARRVARGFSQITSIISIPSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVF-LKLP--AGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAV-----YVDARYAD-TEDRRSVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFV 751
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE) HSP 1 Score: 244 bits (622), Expect = 8.940e-66 Identity = 145/362 (40.06%), Postives = 208/362 (57.46%), Query Frame = 1 Query: 550 PQRARGLRTTW*NVWIRMITGA----KARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFHWDVSQAFVQGESEEDMICLRLPKVAERLQASGRVVNLSRSTNGLEKASIIWHTLPANILKEKGFQQRLTDPCLFHRIFDRRVEIIIVLHVDDMKVIGSKEVCDRLYEDLNQHSPQNNLGELKWCKGCAIDQNSETGTTKISGTAFIDTVCQRISVTSTSLIPPIPTTVLRSREDEEEQCSWPCREAIGSLMWLANIIRSDISNAVREVARHNNNPGPEHWKAVV*ILAYLAGSRTDGITFKRGGGMGVSVCRL*VYADSSYATKTDDIWLVSRDVARVGESTMSQFSSTQ 1623 P+ R + + W W G KAR++AR Q+ ++DY + + P+ A++ AVANE G+++ HWDV QA +E++ RLP A S ++V R+ GL+++ W A+ L E GF+Q DPC+F ++ D V +IIV++VDD+ V GS E C+ L LN+ P NLGE +W GCAI+++ E GT +IS TA+ID++ +R V STS IP P L + ++EE WP R+AIGS+MW++ R D+S A R VARH + P HW A+ IL YL G+R GIT++RG G+G SV Y D+SYA T+D S VG + +S S TQ Sbjct: 885 PEGRRPVSSKWCFSWKTNKEGKIDKFKARVVARGFSQLPNVDYFRSSSPCPSSASIMLMLAVANEKGMNLNHWDVKQASPHATLDEEVFP-RLP--AGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGPSV-----YVDASYAD-TEDSRSGSGLATTVGGTLVSHGSKTQ 1237 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11444.940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11444.940.1 >prot_H-paniculata_contig11444.940.1 ID=prot_H-paniculata_contig11444.940.1|Name=mRNA_H-paniculata_contig11444.940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=276bp MITGAKARLIAREDKQVHHLDYDHTFTSTPTIATVKTDAAVANELGLSIFback to top mRNA from alignment at H-paniculata_contig11444:5676..7491+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11444.940.1 ID=mRNA_H-paniculata_contig11444.940.1|Name=mRNA_H-paniculata_contig11444.940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1816bp|location=Sequence derived from alignment at H-paniculata_contig11444:5676..7491+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11444:5676..7491+ >mRNA_H-paniculata_contig11444.940.1 ID=mRNA_H-paniculata_contig11444.940.1|Name=mRNA_H-paniculata_contig11444.940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1656bp|location=Sequence derived from alignment at H-paniculata_contig11444:5676..7491+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |