mRNA_H-paniculata_contig11432.932.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11432.932.1
Unique NamemRNA_H-paniculata_contig11432.932.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11432.932.1 vs. uniprot
Match: A0A6H5KD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD90_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 4.630e-35
Identity = 68/105 (64.76%), Postives = 80/105 (76.19%), Query Frame = 1 
Query:    1 WASDTTVENPHGRGTYVMALEYHPREDLAVTAG-ENGSFNLWGLKRNTSTVESLAATAAGVEGGGK--GDDNPKTHWACTLSVRYKAGLSASALSFCSDGSVLAV 306
            WA+DT+VENPHG G  V ALEYHPRED+ VTAG ++G FNLWGL+R  + +ESLAA A G  GG +  GD     HWAC+LSVRYK GL+A+  SFCSDGSVLAV
Sbjct:  689 WAADTSVENPHGPGNAVAALEYHPREDVVVTAGKQDGGFNLWGLRRTDNALESLAAAAKGGSGGVRTEGDGEQAVHWACSLSVRYKEGLAATGASFCSDGSVLAV 793
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BLAST of mRNA_H-paniculata_contig11432.932.1 vs. uniprot
Match: D7FWD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD6_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 7.050e-32
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 1 
Query:    1 WASDTTVENPHGRGTYVMALEYHPREDLAVTAG-ENGSFNLWGLKRNTSTVESLAATAAGVEGGGKGDDNPKTHWACTLSVRYKAGLSASALSFCSDGSVLAV 306
            WA+DT+VENPHG G  V ALEYHPRE++ VTAG ++G FNLWGL+R  + +ESLAA   G     +G+     HWAC+LSVRYK GL+A+ +SF SDGSVLAV
Sbjct:  195 WAADTSVENPHGAGNAVAALEYHPRENVVVTAGKQDGGFNLWGLRRTDNALESLAAAKGGGGVRAEGEGEQAVHWACSLSVRYKEGLAATGVSFSSDGSVLAV 297
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11432.932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KD90_9PHAE4.630e-3564.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWD6_ECTSI7.050e-3260.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11432contigH-paniculata_contig11432:6253..7354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928851.6292393-CDS-H-paniculata_contig11432:6252..64891622928851.6292393-CDS-H-paniculata_contig11432:6252..6489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11432 6253..6489 +
1691480644.7358549-CDS-H-paniculata_contig11432:6252..64891691480644.7358549-CDS-H-paniculata_contig11432:6252..6489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11432 6253..6489 +
1622928851.6406925-CDS-H-paniculata_contig11432:7282..73541622928851.6406925-CDS-H-paniculata_contig11432:7282..7354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11432 7283..7354 +
1691480644.7473657-CDS-H-paniculata_contig11432:7282..73541691480644.7473657-CDS-H-paniculata_contig11432:7282..7354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11432 7283..7354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11432.932.1prot_H-paniculata_contig11432.932.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11432 6253..7354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11432.932.1

>prot_H-paniculata_contig11432.932.1 ID=prot_H-paniculata_contig11432.932.1|Name=mRNA_H-paniculata_contig11432.932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
WASDTTVENPHGRGTYVMALEYHPREDLAVTAGENGSFNLWGLKRNTSTV
ESLAATAAGVEGGGKGDDNPKTHWACTLSVRYKAGLSASALSFCSDGSVL
AVS
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mRNA from alignment at H-paniculata_contig11432:6253..7354+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11432.932.1 ID=mRNA_H-paniculata_contig11432.932.1|Name=mRNA_H-paniculata_contig11432.932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1102bp|location=Sequence derived from alignment at H-paniculata_contig11432:6253..7354+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGCGTCCGACACCACAGTGGAAAACCCGCATGGGCGTGGGACGTACGT
GATGGCGCTGGAGTACCATCCTAGGGAAGACCTGGCGGTTACTGCGGGCG
AGAATGGCTCGTTCAATCTATGGGGACTGAAGAGAAACACCTCCACTGTC
GAAAGTCTTGCGGCTACGGCGGCGGGGGTGGAGGGAGGCGGGAAGGGCGA
TGATAACCCCAAGACACATTGGGCGTGCACGTTGTCGGTGAGATGAAGAT
ACGAGGAACATAGATAGATAGCTATGACGTGTATAAAACACATGTATTTG
CTCCAAGCAGACAAACCGTCGCTACTGGCTGTTGTTGAGTTGTCTGTTGT
GGAGCTCTTCGTGATTTTAACCATTTCCCGAGAATGTTATCGAAACGTGA
AGTATTGTGTAAGACGCATTACTAACAGAGCAAAATGGAAAATGACAAGG
AGAGTCAGGTTAGGATAGATTGATAGGTAGATAGATGGGTAAATAGATAT
CGCCTTGCTGTGACAGACGGGTGTAATTATTCCATGATAAGCTGTCGGTG
GGTGGGATTTCTATACAGTACCGTGGGTACCCTGATCGATGTAAGGCGAA
AGTGGATTAAAGCGGATCATATTGATCTATCTTCAAAAATACAAATATTC
CTAGTGTTACACGGTAGTTTAAGAAAGAGGTTTTGGATTTATCGCGGGCG
TTGTTTCCTACTGTATCTATTTATTTGATTTTTCGTTACACAACAGGCAT
AGCAGGTGGAAAATGACCATCTGGTTCTCAAGTCAAAACGCCGTTTGCCT
GTTTGCTTGCTTGCTTGCTTGTTTGCTTGCTTGCTTGCTTGCTTGCTTGC
TTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTT
GCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTACTTGCTTGTTTGCTTTG
TTCTATCGTCGTTTCCTTGGCTCGTATGTGTGATGGCTAATAATTTCAAC
GCAACAATATGCTTGACGATTAATGAAAAGGTTCGCTACAAGGCGGGACT
GTCTGCTTCGGCGTTGTCGTTTTGCTCCGACGGTTCCGTCCTCGCGGTGT
CC
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Coding sequence (CDS) from alignment at H-paniculata_contig11432:6253..7354+

>mRNA_H-paniculata_contig11432.932.1 ID=mRNA_H-paniculata_contig11432.932.1|Name=mRNA_H-paniculata_contig11432.932.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig11432:6253..7354+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGCGTCCGACACCACAGTGGAAAACCCGCATGGGCGTGGGACGTACGT
GATGGCGCTGGAGTACCATCCTAGGGAAGACCTGGCGGTTACTGCGGGCG
AGAATGGCTCGTTCAATCTATGGGGACTGAAGAGAAACACCTCCACTGTC
GAAAGTCTTGCGGCTACGGCGGCGGGGGTGGAGGGAGGCGGGAAGGGCGA
TGATAACCCCAAGACACATTGGGCGTGCACGTTGTCGTGGGCGTCCGACA
CCACAGTGGAAAACCCGCATGGGCGTGGGACGTACGTGATGGCGCTGGAG
TACCATCCTAGGGAAGACCTGGCGGTTACTGCGGGCGAGAATGGCTCGTT
CAATCTATGGGGACTGAAGAGAAACACCTCCACTGTCGAAAGTCTTGCGG
CTACGGCGGCGGGGGTGGAGGGAGGCGGGAAGGGCGATGATAACCCCAAG
ACACATTGGGCGTGCACGTTGTCGGTTCGCTACAAGGCGGGACTGTCTGC
TTCGGCGTTGTCGTTTTGCTCCGACGGTTCCGTCCTCGCGGTGTCCGTTC
GCTACAAGGCGGGACTGTCTGCTTCGGCGTTGTCGTTTTGCTCCGACGGT
TCCGTCCTCGCGGTGTCC
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