mRNA_H-paniculata_contig34806.9283.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34806.9283.1
Unique NamemRNA_H-paniculata_contig34806.9283.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Match: A0A6G0X235_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X235_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.310e-14
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    7 WNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTKPKARLLARGFSQQHNVGFLEVFAPTVAASSI 246
            W +A+++E + L     W  VD +P+ +NVVS +WVF  K D +G+V K KARL+ARGFSQQ+ V + E ++P +   S+
Sbjct:   33 WREAMQVEIDNLIENGTWQLVD-LPRDTNVVSNKWVFKVKYDSKGDVEKFKARLVARGFSQQYGVDYTETYSPVIKQQSV 111          
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Match: S4NP08_9NEOP (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pararge aegeria TaxID=116150 RepID=S4NP08_9NEOP)

HSP 1 Score: 70.5 bits (171), Expect = 4.410e-14
Identity = 33/82 (40.24%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 DLWNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTKPKARLLARGFSQQHNVGFLEVFAPTVAASSI 246
            D W KA++ E E L + + W+ V+ +P + N+VS +WVFA K ++ G  T+ KARL+ARGF+Q++   + E FAP    +++
Sbjct:    5 DKWLKAIQSEIESLRNNKTWDLVE-IPNNVNIVSCKWVFAIKNNESGEPTRYKARLVARGFTQEYLQDYDETFAPVARMTTL 85          
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Match: A0A6L2P044_TANCI (Copia-type polyprotein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2P044_TANCI)

HSP 1 Score: 74.3 bits (181), Expect = 1.170e-13
Identity = 30/80 (37.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    7 WNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTKPKARLLARGFSQQHNVGFLEVFAPTVAASSI 246
            W KA+ +E + +E  + WN +D +PK +  +  +WVF  K++++G V K KARL+ARG+ Q+  V ++E++AP     +I
Sbjct: 1347 WKKAMDLEIQAIEKNQTWNLID-LPKGTKCIGVKWVFKTKLNEKGEVEKHKARLVARGYRQEFGVDYVEIYAPVARMDTI 1425          
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Match: A0A5C3EBA0_9BASI (Related to Retrotransposon protein n=1 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3EBA0_9BASI)

HSP 1 Score: 73.9 bits (180), Expect = 1.580e-13
Identity = 31/80 (38.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    7 WNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTKPKARLLARGFSQQHNVGFLEVFAPTVAASSI 246
            W +A+++E + L++   W  VD +P +   ++A+WVF  K D  GNV+K KARL+ARGF+Q H + + + + P V+ +S+
Sbjct:  878 WEEAIKVELDSLDNTGTWTIVD-LPAARKAITAKWVFKTKQDADGNVSKYKARLVARGFTQMHGIDYHDTYLPVVSMTSL 956          
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Match: Q9ZQE9_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9ZQE9_ARATH)

HSP 1 Score: 72.8 bits (177), Expect = 4.040e-13
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    7 WNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTKPKARLLARGFSQQHNVGFLEVFAP 225
            W +A+  E + +E  R W  VD  P+  NV+S +W++  K D  GN  K KARL+ARGFSQ++ + +LE FAP
Sbjct:  849 WEEAMNEEIKVIEKNRTWKLVDK-PEKKNVISVKWIYKIKTDASGNHVKHKARLVARGFSQEYGIDYLETFAP 920          
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Match: A0A535F797_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F797_9CHLR)

HSP 1 Score: 72.4 bits (176), Expect = 5.520e-13
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 1
Query:    7 WNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTKPKARLLARGFSQQHNVGFLEVFAPTVAASSI 246
            W+ A+  E + + +   W  VD  PK  N+VS++WVF  K    G + + KARL+ARGFSQQH + + E FAP V   S+
Sbjct:  830 WSAAINEELQSIATNTVWELVDT-PKGVNIVSSKWVFKLKCLPDGRIDRYKARLVARGFSQQHGIDYYETFAPVVRLESL 908          
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Match: A0A6G0WWJ4_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWJ4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 9.930e-13
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 1
Query:    1 DLWNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTKPKARLLARGFSQQHNVGFLEVFAPTVAASSI 246
            ++W  A+  E E L     W  VD  P  +N+VS +W F  K D  G+V K KARL+ARGFSQQ+ V + E F+P +   S+
Sbjct:  399 NMWRDAMIAEIENLIENGTWQLVDR-PTDTNIVSNKWAFKVKYDSNGDVEKFKARLVARGFSQQYGVDYTETFSPVIKLQSV 479          
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Match: UPI001A562A11 (uncharacterized protein n=3 Tax=Ustilago hordei TaxID=120017 RepID=UPI001A562A11)

HSP 1 Score: 71.2 bits (173), Expect = 1.370e-12
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    7 WNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTKPKARLLARGFSQQHNVGFLEVFAPTVAASSI 246
            W +A+R E +GLE++  W  VD +PK +N V   WV   K D    +TK KARL+ARGF+Q+  + + EVFAP     SI
Sbjct:   45 WEEAMRKELDGLEAMGTWEIVD-LPKGANTVDTCWVLKIKTDANLVLTKFKARLVARGFTQREGIDYTEVFAPVAPIQSI 123          
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Match: A0A2K3N6U7_TRIPR (Retrotransposon-related protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N6U7_TRIPR)

HSP 1 Score: 70.9 bits (172), Expect = 1.790e-12
Identity = 31/82 (37.80%), Postives = 51/82 (62.20%), Query Frame = 1
Query:    1 DLWNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTKPKARLLARGFSQQHNVGFLEVFAPTVAASSI 246
            ++W KA+  E E +ES   W   + +P  S  +  +W++  K++++G V K KARL+A+G+SQQ+ + F EVFAP     +I
Sbjct:   26 EVWRKAMDHEIESIESNDTWELTE-LPSGSKKIGVKWIYKTKLNEKGKVEKYKARLIAKGYSQQYGIYFKEVFAPVARRDTI 106          
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Match: A0A6D2HJM6_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HJM6_9BRAS)

HSP 1 Score: 70.9 bits (172), Expect = 1.920e-12
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    7 WNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVTKPKARLLARGFSQQHNVGFLEVFAP 225
            W +A++ E E +E  + W  VD  P+  NV+S +W++  K    GN  K KARL+ARGFSQ++ V +LE FAP
Sbjct:  865 WEEAMKEEIEMIEKNKTWKLVDK-PEKKNVISVKWIYKIKTYANGNHIKHKARLVARGFSQEYGVDYLETFAP 936          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34806.9283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0X235_9STRA2.310e-1443.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
S4NP08_9NEOP4.410e-1440.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6L2P044_TANCI1.170e-1337.50Copia-type polyprotein (Fragment) n=1 Tax=Tanacetu... [more]
A0A5C3EBA0_9BASI1.580e-1338.75Related to Retrotransposon protein n=1 Tax=Ustilag... [more]
Q9ZQE9_ARATH4.040e-1345.21Putative retroelement pol polyprotein n=1 Tax=Arab... [more]
A0A535F797_9CHLR5.520e-1342.50DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A6G0WWJ4_9STRA9.930e-1342.68Integrase catalytic domain-containing protein n=1 ... [more]
UPI001A562A111.370e-1245.00uncharacterized protein n=3 Tax=Ustilago hordei Ta... [more]
A0A2K3N6U7_TRIPR1.790e-1237.80Retrotransposon-related protein n=1 Tax=Trifolium ... [more]
A0A6D2HJM6_9BRAS1.920e-1245.21Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34806contigH-paniculata_contig34806:1761..2009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score70.9
Seed ortholog evalue3.3e-10
Seed eggNOG ortholog40559.M7U181
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs20YYK@147548,38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelLeotiomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930075.7078848-CDS-H-paniculata_contig34806:1760..20091622930075.7078848-CDS-H-paniculata_contig34806:1760..2009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34806 1761..2009 -
1691481136.7301457-CDS-H-paniculata_contig34806:1760..20091691481136.7301457-CDS-H-paniculata_contig34806:1760..2009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34806 1761..2009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34806.9283.1prot_H-paniculata_contig34806.9283.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34806 1761..2009 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34806.9283.1

>prot_H-paniculata_contig34806.9283.1 ID=prot_H-paniculata_contig34806.9283.1|Name=mRNA_H-paniculata_contig34806.9283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
DLWNKAVRIEFEGLESLRAWNYVDNVPKSSNVVSARWVFARKIDDRGNVT
KPKARLLARGFSQQHNVGFLEVFAPTVAASSI*
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mRNA from alignment at H-paniculata_contig34806:1761..2009-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34806.9283.1 ID=mRNA_H-paniculata_contig34806.9283.1|Name=mRNA_H-paniculata_contig34806.9283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at H-paniculata_contig34806:1761..2009- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTTGTGGAATAAGGCAGTCAGAATAGAGTTTGAGGGCTTGGAGAGTCT CAGAGCTTGGAATTATGTTGACAATGTGCCAAAGAGTTCCAATGTGGTCA GTGCTAGGTGGGTATTTGCACGGAAAATTGATGATCGGGGGAATGTGACG AAGCCAAAGGCAAGGCTCCTAGCTCGCGGGTTTAGCCAGCAGCATAACGT TGGTTTTCTCGAGGTGTTTGCTCCTACGGTAGCCGCCTCCAGTATCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig34806:1761..2009-

>mRNA_H-paniculata_contig34806.9283.1 ID=mRNA_H-paniculata_contig34806.9283.1|Name=mRNA_H-paniculata_contig34806.9283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig34806:1761..2009- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTTGTGGAATAAGGCAGTCAGAATAGAGTTTGAGGGCTTGGAGAGTCT
CAGAGCTTGGAATTATGTTGACAATGTGCCAAAGAGTTCCAATGTGGTCA
GTGCTAGGTGGGTATTTGCACGGAAAATTGATGATCGGGGGAATGTGACG
AAGCCAAAGGCAAGGCTCCTAGCTCGCGGGTTTAGCCAGCAGCATAACGT
TGGTTTTCTCGAGGTGTTTGCTCCTACGGTAGCCGCCTCCAGTATCTAAG
ACTTGTGGAATAAGGCAGTCAGAATAGAGTTTGAGGGCTTGGAGAGTCTC
AGAGCTTGGAATTATGTTGACAATGTGCCAAAGAGTTCCAATGTGGTCAG
TGCTAGGTGGGTATTTGCACGGAAAATTGATGATCGGGGGAATGTGACGA
AGCCAAAGGCAAGGCTCCTAGCTCGCGGGTTTAGCCAGCAGCATAACGTT
GGTTTTCTCGAGGTGTTTGCTCCTACGGTAGCCGCCTCCAGTATCTAA
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