mRNA_H-paniculata_contig34806.9282.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34806.9282.1
Unique NamemRNA_H-paniculata_contig34806.9282.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Match: D7FP76_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP76_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 8.240e-34
Identity = 58/68 (85.29%), Postives = 67/68 (98.53%), Query Frame = 1
Query:    4 TRPCIVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRISHGPIRLKSLRPGEWRRLE 207
            TRPCIVE++NYDRRTR+T+VD+IIREGKNRQIRRMFEGIGH+V+SITR+SHGPIRLK+LRPGEWR LE
Sbjct:  200 TRPCIVEVVNYDRRTRVTTVDIIIREGKNRQIRRMFEGIGHEVKSITRVSHGPIRLKNLRPGEWRELE 267          
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Match: A0A6H5JKH0_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH0_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.200e-33
Identity = 58/68 (85.29%), Postives = 68/68 (100.00%), Query Frame = 1
Query:    4 TRPCIVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRISHGPIRLKSLRPGEWRRLE 207
            TRPCIVE++NYDRRTR+T+VD+IIREGKNRQIRRMFEGIGH+V+SITR+SHGPIRLK+LRPGEWR+LE
Sbjct:  278 TRPCIVEVVNYDRRTRVTTVDIIIREGKNRQIRRMFEGIGHEVKSITRVSHGPIRLKNLRPGEWRQLE 345          
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Match: A0A836CPN1_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPN1_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.010e-23
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    4 TRPCIVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRISHGPIRLKSLRPGEWRRL 204
            T+PC +EII+YD R +   +DV++REGKNRQIRRMFE IGH VR+ITR+ HGPI LK LRPGEWR L
Sbjct:  204 TQPCDIEIISYDERRKHLVLDVVLREGKNRQIRRMFEAIGHPVRAITRLKHGPIGLKQLRPGEWRAL 270          
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Match: S0EVG8_CHTCT (Pseudouridine synthase n=3 Tax=Chthonomonas TaxID=1077265 RepID=S0EVG8_CHTCT)

HSP 1 Score: 81.3 bits (199), Expect = 4.620e-17
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    4 TRPCIVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRISHGPIRLKSLRPGEWRRL 204
            T P  V  ++YD+ T+ T +D+ IREG+NRQ+RRM E +GH VR +TRI  G +RLK L PG WR+L
Sbjct:  160 TAPAEVRFVDYDKGTQSTILDITIREGRNRQVRRMMEAVGHPVRQLTRIGFGNLRLKGLAPGTWRKL 226          
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Match: A0A7S2V7H6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7H6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.970e-14
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    4 TRPCIVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRISHGPIRLKSLRPGEWRRLE 207
            T PC +E + YD + + + VDV +REG+NRQIRRMF+ +G+ V +I R   GP+RL  L  GEW+ L+
Sbjct:   71 TAPCYLEPVLYDSKKKNSVVDVTLREGRNRQIRRMFDHLGYKVVNIKRTQFGPVRLGGLSHGEWKELK 138          
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Match: A0A7R9UB15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB15_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.030e-13
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1
Query:   16 IVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRISHGPIRLKSLRPGEWRRL 204
            + E I+Y   T+ TS+++I+REG+NRQIRRM E +GH VR+I R + GPI L SL+ GEWR L
Sbjct:  354 VAEEISYYADTKETSIEMILREGRNRQIRRMMEQLGHPVRTIVRTAVGPIGLGSLKAGEWRTL 416          
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Match: A0A1I1HE83_9CLOT (Pseudouridine synthase n=1 Tax=Clostridium uliginosum TaxID=119641 RepID=A0A1I1HE83_9CLOT)

HSP 1 Score: 70.5 bits (171), Expect = 4.490e-13
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    1 RTRPCIVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRISHGPIRLKSLRPGEWRRL 204
            +T P  +++++YDR   M++V+V I EGKNRQIR+MF  IG++V  + RIS G I+LK L+ GEWR L
Sbjct:  160 KTAPADIKVLSYDRG--MSTVEVSIHEGKNRQIRKMFAAIGYEVVGLNRISIGDIKLKYLKKGEWREL 225          
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Match: A0A124IW07_9BACL (Pseudouridine synthase n=2 Tax=Acidibacillus ferrooxidans TaxID=1765683 RepID=A0A124IW07_9BACL)

HSP 1 Score: 70.5 bits (171), Expect = 5.560e-13
Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 RTRPCIVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRISHGPIRLKSLRPGEWRRL 204
            +T P +V +I  D +T +  V++I+ EG+NRQ+RRMFE +GH V  +TR  +G + L +LRPG WR+L
Sbjct:  167 KTAPAVVNVIGTDGKTSV--VELILHEGRNRQVRRMFEAVGHPVLDLTRTRYGHLSLTALRPGSWRKL 232          
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Match: A0A832F5D2_9BACT (Pseudouridine synthase n=1 Tax=Chthonomonadetes bacterium TaxID=2282152 RepID=A0A832F5D2_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 8.300e-13
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    4 TRPCIVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRISHGPIRLKSLRPGEWRRL 204
            T P  VE I+YD+    + +D+ + EG+NRQIRRM   +GH   ++TR+S GPI +K L PG WR+L
Sbjct:  168 TAPAGVEFIHYDQAHNTSVLDITLYEGRNRQIRRMMAAVGHPALALTRLSIGPISVKGLAPGTWRKL 234          
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Match: A0A075KH32_9FIRM (Pseudouridine synthase n=1 Tax=Pelosinus sp. UFO1 TaxID=484770 RepID=A0A075KH32_9FIRM)

HSP 1 Score: 69.7 bits (169), Expect = 9.130e-13
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    4 TRPCIVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRISHGPIRLKSLRPGEWRRL 204
            T P ++ +I++DR   MTS+ + I EGKNRQIRRMFE IG DV+ + R+    + L+ LR G +R L
Sbjct:  160 TAPAVINMIDFDRERNMTSLQITIHEGKNRQIRRMFEAIGSDVKQLKRVQFAFLTLEGLRRGSYRHL 226          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP76_ECTSI8.240e-3485.29Pseudouridine synthase n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JKH0_9PHAE1.200e-3385.29S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A836CPN1_9STRA1.010e-2368.66Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
S0EVG8_CHTCT4.620e-1753.73Pseudouridine synthase n=3 Tax=Chthonomonas TaxID=... [more]
A0A7S2V7H6_9STRA8.970e-1448.53Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9UB15_9STRA4.030e-1355.56Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A1I1HE83_9CLOT4.490e-1351.47Pseudouridine synthase n=1 Tax=Clostridium uligino... [more]
A0A124IW07_9BACL5.560e-1347.06Pseudouridine synthase n=2 Tax=Acidibacillus ferro... [more]
A0A832F5D2_9BACT8.300e-1347.76Pseudouridine synthase n=1 Tax=Chthonomonadetes ba... [more]
A0A075KH32_9FIRM9.130e-1347.76Pseudouridine synthase n=1 Tax=Pelosinus sp. UFO1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34806contigH-paniculata_contig34806:238..444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue1.9e-27
Seed eggNOG ortholog2880.D7FP76
Hectar predicted targeting categoryother localisation
EggNOG free text desc.enzyme-directed rRNA pseudouridine synthesis
EggNOG OGs2QT4T@2759,COG1187@1
Ec32 ortholog descriptionRNA-binding S4 domain
Ec32 orthologEc-08_000550.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930075.655754-CDS-H-paniculata_contig34806:237..4441622930075.655754-CDS-H-paniculata_contig34806:237..444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34806 238..444 +
1691481136.7165563-CDS-H-paniculata_contig34806:237..4441691481136.7165563-CDS-H-paniculata_contig34806:237..444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34806 238..444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34806.9282.1prot_H-paniculata_contig34806.9282.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34806 238..444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34806.9282.1

>prot_H-paniculata_contig34806.9282.1 ID=prot_H-paniculata_contig34806.9282.1|Name=mRNA_H-paniculata_contig34806.9282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
RTRPCIVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRI
SHGPIRLKSLRPGEWRRLE
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mRNA from alignment at H-paniculata_contig34806:238..444+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34806.9282.1 ID=mRNA_H-paniculata_contig34806.9282.1|Name=mRNA_H-paniculata_contig34806.9282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at H-paniculata_contig34806:238..444+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAACACGACCATGCATTGTAGAGATTATCAACTACGATCGACGTACCAG GATGACGTCGGTAGATGTCATCATTAGGGAAGGGAAAAACAGACAGATCC GACGTATGTTCGAGGGGATCGGTCATGACGTCCGGTCGATCACGCGCATC TCGCACGGACCGATTCGTCTCAAGAGTCTGAGACCTGGGGAGTGGCGCAG GCTCGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig34806:238..444+

>mRNA_H-paniculata_contig34806.9282.1 ID=mRNA_H-paniculata_contig34806.9282.1|Name=mRNA_H-paniculata_contig34806.9282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig34806:238..444+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAACACGACCATGCATTGTAGAGATTATCAACTACGATCGACGTACCAG
GATGACGTCGGTAGATGTCATCATTAGGGAAGGGAAAAACAGACAGATCC
GACGTATGTTCGAGGGGATCGGTCATGACGTCCGGTCGATCACGCGCATC
TCGCACGGACCGATTCGTCTCAAGAGTCTGAGACCTGGGGAGTGGCGCAG
GCTCGAAAGAACACGACCATGCATTGTAGAGATTATCAACTACGATCGAC
GTACCAGGATGACGTCGGTAGATGTCATCATTAGGGAAGGGAAAAACAGA
CAGATCCGACGTATGTTCGAGGGGATCGGTCATGACGTCCGGTCGATCAC
GCGCATCTCGCACGGACCGATTCGTCTCAAGAGTCTGAGACCTGGGGAGT
GGCGCAGGCTCGAA
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