mRNA_H-paniculata_contig34806.9282.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Match: D7FP76_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP76_ECTSI) HSP 1 Score: 129 bits (323), Expect = 8.240e-34 Identity = 58/68 (85.29%), Postives = 67/68 (98.53%), Query Frame = 1
Query: 4 TRPCIVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRISHGPIRLKSLRPGEWRRLE 207
TRPCIVE++NYDRRTR+T+VD+IIREGKNRQIRRMFEGIGH+V+SITR+SHGPIRLK+LRPGEWR LE
Sbjct: 200 TRPCIVEVVNYDRRTRVTTVDIIIREGKNRQIRRMFEGIGHEVKSITRVSHGPIRLKNLRPGEWRELE 267
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Match: A0A6H5JKH0_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH0_9PHAE) HSP 1 Score: 129 bits (324), Expect = 1.200e-33 Identity = 58/68 (85.29%), Postives = 68/68 (100.00%), Query Frame = 1
Query: 4 TRPCIVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRISHGPIRLKSLRPGEWRRLE 207
TRPCIVE++NYDRRTR+T+VD+IIREGKNRQIRRMFEGIGH+V+SITR+SHGPIRLK+LRPGEWR+LE
Sbjct: 278 TRPCIVEVVNYDRRTRVTTVDIIIREGKNRQIRRMFEGIGHEVKSITRVSHGPIRLKNLRPGEWRQLE 345
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Match: A0A836CPN1_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPN1_9STRA) HSP 1 Score: 100 bits (249), Expect = 1.010e-23 Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 1
Query: 4 TRPCIVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRISHGPIRLKSLRPGEWRRL 204
T+PC +EII+YD R + +DV++REGKNRQIRRMFE IGH VR+ITR+ HGPI LK LRPGEWR L
Sbjct: 204 TQPCDIEIISYDERRKHLVLDVVLREGKNRQIRRMFEAIGHPVRAITRLKHGPIGLKQLRPGEWRAL 270
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Match: S0EVG8_CHTCT (Pseudouridine synthase n=3 Tax=Chthonomonas TaxID=1077265 RepID=S0EVG8_CHTCT) HSP 1 Score: 81.3 bits (199), Expect = 4.620e-17 Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 1
Query: 4 TRPCIVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRISHGPIRLKSLRPGEWRRL 204
T P V ++YD+ T+ T +D+ IREG+NRQ+RRM E +GH VR +TRI G +RLK L PG WR+L
Sbjct: 160 TAPAEVRFVDYDKGTQSTILDITIREGRNRQVRRMMEAVGHPVRQLTRIGFGNLRLKGLAPGTWRKL 226
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Match: A0A7S2V7H6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7H6_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 8.970e-14 Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 1
Query: 4 TRPCIVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRISHGPIRLKSLRPGEWRRLE 207
T PC +E + YD + + + VDV +REG+NRQIRRMF+ +G+ V +I R GP+RL L GEW+ L+
Sbjct: 71 TAPCYLEPVLYDSKKKNSVVDVTLREGRNRQIRRMFDHLGYKVVNIKRTQFGPVRLGGLSHGEWKELK 138
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Match: A0A7R9UB15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB15_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 4.030e-13 Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1
Query: 16 IVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRISHGPIRLKSLRPGEWRRL 204
+ E I+Y T+ TS+++I+REG+NRQIRRM E +GH VR+I R + GPI L SL+ GEWR L
Sbjct: 354 VAEEISYYADTKETSIEMILREGRNRQIRRMMEQLGHPVRTIVRTAVGPIGLGSLKAGEWRTL 416
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Match: A0A1I1HE83_9CLOT (Pseudouridine synthase n=1 Tax=Clostridium uliginosum TaxID=119641 RepID=A0A1I1HE83_9CLOT) HSP 1 Score: 70.5 bits (171), Expect = 4.490e-13 Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 1
Query: 1 RTRPCIVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRISHGPIRLKSLRPGEWRRL 204
+T P +++++YDR M++V+V I EGKNRQIR+MF IG++V + RIS G I+LK L+ GEWR L
Sbjct: 160 KTAPADIKVLSYDRG--MSTVEVSIHEGKNRQIRKMFAAIGYEVVGLNRISIGDIKLKYLKKGEWREL 225
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Match: A0A124IW07_9BACL (Pseudouridine synthase n=2 Tax=Acidibacillus ferrooxidans TaxID=1765683 RepID=A0A124IW07_9BACL) HSP 1 Score: 70.5 bits (171), Expect = 5.560e-13 Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 1
Query: 1 RTRPCIVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRISHGPIRLKSLRPGEWRRL 204
+T P +V +I D +T + V++I+ EG+NRQ+RRMFE +GH V +TR +G + L +LRPG WR+L
Sbjct: 167 KTAPAVVNVIGTDGKTSV--VELILHEGRNRQVRRMFEAVGHPVLDLTRTRYGHLSLTALRPGSWRKL 232
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Match: A0A832F5D2_9BACT (Pseudouridine synthase n=1 Tax=Chthonomonadetes bacterium TaxID=2282152 RepID=A0A832F5D2_9BACT) HSP 1 Score: 70.1 bits (170), Expect = 8.300e-13 Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 1
Query: 4 TRPCIVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRISHGPIRLKSLRPGEWRRL 204
T P VE I+YD+ + +D+ + EG+NRQIRRM +GH ++TR+S GPI +K L PG WR+L
Sbjct: 168 TAPAGVEFIHYDQAHNTSVLDITLYEGRNRQIRRMMAAVGHPALALTRLSIGPISVKGLAPGTWRKL 234
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Match: A0A075KH32_9FIRM (Pseudouridine synthase n=1 Tax=Pelosinus sp. UFO1 TaxID=484770 RepID=A0A075KH32_9FIRM) HSP 1 Score: 69.7 bits (169), Expect = 9.130e-13 Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 1
Query: 4 TRPCIVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRISHGPIRLKSLRPGEWRRL 204
T P ++ +I++DR MTS+ + I EGKNRQIRRMFE IG DV+ + R+ + L+ LR G +R L
Sbjct: 160 TAPAVINMIDFDRERNMTSLQITIHEGKNRQIRRMFEAIGSDVKQLKRVQFAFLTLEGLRRGSYRHL 226 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34806.9282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig34806.9282.1 >prot_H-paniculata_contig34806.9282.1 ID=prot_H-paniculata_contig34806.9282.1|Name=mRNA_H-paniculata_contig34806.9282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp RTRPCIVEIINYDRRTRMTSVDVIIREGKNRQIRRMFEGIGHDVRSITRIback to top mRNA from alignment at H-paniculata_contig34806:238..444+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig34806.9282.1 ID=mRNA_H-paniculata_contig34806.9282.1|Name=mRNA_H-paniculata_contig34806.9282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at H-paniculata_contig34806:238..444+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig34806:238..444+ >mRNA_H-paniculata_contig34806.9282.1 ID=mRNA_H-paniculata_contig34806.9282.1|Name=mRNA_H-paniculata_contig34806.9282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig34806:238..444+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |