mRNA_H-paniculata_contig34805.9281.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34805.9281.1
Unique NamemRNA_H-paniculata_contig34805.9281.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34805.9281.1 vs. uniprot
Match: D8LK00_ECTSI (DEK C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK00_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 6.300e-37
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 1
Query:    1 DLEGIVDTFSDDEGDKVAQDTFLNDEAAAGDRQALKDMVRRVREGFGDERSG-RSRGSAARGNLRLDELTAADRSSRKEARRLGLLNSDEEWS 276
            DLEGIVDTFSDDEGDK AQDT++NDE AAGDR+ LK+MVRRVREGFG+ER G R RG  ARGNLRLDELT AD+S+R EARRLGLLNSDEEWS
Sbjct: 1439 DLEGIVDTFSDDEGDKAAQDTYINDENAAGDRRELKEMVRRVREGFGEERGGGRGRGGNARGNLRLDELTRADKSTRGEARRLGLLNSDEEWS 1531          
BLAST of mRNA_H-paniculata_contig34805.9281.1 vs. uniprot
Match: A0A6H5KTL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL5_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.910e-35
Identity = 74/93 (79.57%), Postives = 82/93 (88.17%), Query Frame = 1
Query:    1 DLEGIVDTFSDDEGDKVAQDTFLNDEAAAGDRQALKDMVRRVREGFGDERSG-RSRGSAARGNLRLDELTAADRSSRKEARRLGLLNSDEEWS 276
            DLEGIVDTFSDDEGDK AQD+++N+E AAGDR+ LK+MVRRVREGFGDER G R RG  ARGNLRLDELT AD+S+R EA RLGLLNSDEEWS
Sbjct: 1505 DLEGIVDTFSDDEGDKAAQDSYINNENAAGDRRELKEMVRRVREGFGDERGGGRGRGGNARGNLRLDELTRADKSTRGEAARLGLLNSDEEWS 1597          
BLAST of mRNA_H-paniculata_contig34805.9281.1 vs. uniprot
Match: A0A836CNL9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNL9_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.210e-16
Identity = 51/76 (67.11%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  166 GSAARGNLRLDELTAADRSSRKEARRLGLLNSDEEWSDDEKGKG----EDDDLEELDEQQLGELLAKEQRARHMGL 381
            G++ARG LRLD+LTAADRSSR+EARRLGLLN DEEWSDDE GK     E D       QQL ELL +EQR RH+GL
Sbjct:    5 GASARGALRLDQLTAADRSSRREARRLGLLNEDEEWSDDEGGKQGGQEEADXXXXXXXQQLAELLLREQRKRHLGL 80          
BLAST of mRNA_H-paniculata_contig34805.9281.1 vs. uniprot
Match: W7U217_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U217_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.640e-16
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    1 DLEGIVDTFSDDEGDKVAQDTFLNDEAAAGDRQALKDMVRRVREGFGDERSGRSRGSAARGNLRLDELTAADRSSRKEARRLGLLNSDEEWSDDEKG 291
            D EGIVD  S+ EGD  A   F   +    D++ L++++RRV+EGF   R G + G  ARG LRLD+L  ADR SR+EA+RLGLLNSDEE S +++G
Sbjct: 1353 DFEGIVDEVSEGEGDDDAFHDFAAQKEVEADKEQLQEVMRRVKEGFDGRRGGINFG--ARGRLRLDQLVGADRKSRREAKRLGLLNSDEELSSEDEG 1447          
BLAST of mRNA_H-paniculata_contig34805.9281.1 vs. uniprot
Match: A0A7R9ZSQ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZSQ0_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.260e-13
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 1
Query:    1 DLEGIVDTFSDDEGDKVAQDTFLNDEAAAGDRQALKDMVRRVREGFGDERSGRSRGSA--ARGNLRLDELTAADRSSRKEARRLGLLNSDEEWSDD 282
            DLE IVD  SDDEGD+ A +      A   +++  K+++RR+REG+   R G + G    ARGNLR D+L AAD  +R++A+RLGLLN DE  SDD
Sbjct:   18 DLEHIVDELSDDEGDEEAGEDARKKIARMEEKRRHKEILRRMREGYDGRRGGIAGGGGMGARGNLRFDQLVAAD--NREDAKRLGLLNDDELDSDD 111          
BLAST of mRNA_H-paniculata_contig34805.9281.1 vs. uniprot
Match: A0A485LKA6_9STRA (Aste57867_22418 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LKA6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.000e-12
Identity = 50/95 (52.63%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    1 DLEGIVDTFSDDEGDKVAQDTFLNDEAAAGDRQALKDMVRRVREGFGDERS--GRSRGSAARGNLRLDELTAADRSSRKEARRLGLLNSDEEWSD 279
            DLE IVD  SDDE DK A D +  +   A DR  + +++R VREGFG  R     S    ARG   LDEL AAD  S+KEA RLGLL SDEE  D
Sbjct:  402 DLENIVDELSDDEKDKDA-DEYFRERMEAQDRDQVSEVMRNVREGFGRNRRIFSSSLNGEARGRFNLDELVAAD-GSKKEAARLGLLESDEEGGD 494          
BLAST of mRNA_H-paniculata_contig34805.9281.1 vs. uniprot
Match: D0NX70_PHYIT (MRC1 domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NX70_PHYIT)

HSP 1 Score: 72.4 bits (176), Expect = 2.720e-12
Identity = 52/101 (51.49%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    1 DLEGIVDTFSDDE-GDKVAQDTFLNDEAAAGDRQALKDMVRRVREGFGDER---SGRSRGSAARGNLRLDELTAADRSSRKEARRLGLLNSDEEWSDDEKG 291
            DL+ IVD  SDDE   +   D     E    DRQ +K+++R V+EGFG  R   SG   GS ARG   LDEL AAD  S+ EA RLGLL SDEE S+DE G
Sbjct:  315 DLDHIVDDLSDDERAQEQDLDEMFRREQEDQDRQQVKEVMRNVKEGFGRNRRAFSGLHSGSGARGRFNLDELVAAD-GSKFEAARLGLLESDEELSEDENG 414          
BLAST of mRNA_H-paniculata_contig34805.9281.1 vs. uniprot
Match: A0A6G0XHK2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHK2_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.280e-11
Identity = 49/91 (53.85%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    1 DLEGIVDTFSDDEGDKVAQDTFLNDEAAAGDRQALKDMVRRVREGFGDERS--GRSRGSAARGNLRLDELTAADRSSRKEARRLGLLNSDE 267
            DLE IVD  SDDE DK A D F  +   A DR  + +++R VREGFG  R     S    ARG   LDEL AAD  S+KEA RLGLL SDE
Sbjct:  367 DLENIVDELSDDEKDKDADDYF-RERMEAQDRDEVSEVMRNVREGFGRNRRIFSSSLNGEARGRFNLDELVAAD-GSKKEAARLGLLESDE 455          
BLAST of mRNA_H-paniculata_contig34805.9281.1 vs. uniprot
Match: A0A329RLN9_9STRA (MRC1 domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RLN9_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.290e-11
Identity = 51/101 (50.50%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    1 DLEGIVDTFSDDE-GDKVAQDTFLNDEAAAGDRQALKDMVRRVREGFGDER---SGRSRGSAARGNLRLDELTAADRSSRKEARRLGLLNSDEEWSDDEKG 291
            DL+ IVD  SD+E   +   D     E    DRQ +K+++R V+EGFG  R   SG   GS ARG   LDEL AAD  S+ EA RLGLL SDEE S+DE G
Sbjct:  370 DLDHIVDDLSDEERAQEQDLDEMFRREQEDQDRQQVKEVMRNVKEGFGRNRRAFSGLHSGSGARGRFNLDELVAAD-GSKFEAARLGLLESDEEISEDESG 469          
BLAST of mRNA_H-paniculata_contig34805.9281.1 vs. uniprot
Match: A0A8J5JCW2_9STRA (MRC1 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JCW2_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.340e-11
Identity = 51/101 (50.50%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    1 DLEGIVDTFSDDE-GDKVAQDTFLNDEAAAGDRQALKDMVRRVREGFGDER---SGRSRGSAARGNLRLDELTAADRSSRKEARRLGLLNSDEEWSDDEKG 291
            DL+ IVD  SD+E   +   D     E    DRQ +K+++R V+EGFG  R   SG   GS ARG   LDEL AAD  S+ EA RLGLL SDEE S+DE G
Sbjct:  373 DLDHIVDDLSDEERAQEQDLDEMFRREQEDQDRQQVKEVMRNVKEGFGRNRRAFSGLHSGSGARGRFNLDELVAAD-GSKFEAARLGLLESDEEISEDESG 472          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34805.9281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LK00_ECTSI6.300e-3781.72DEK C-terminal domain-containing protein n=1 Tax=E... [more]
A0A6H5KTL5_9PHAE1.910e-3579.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CNL9_9STRA1.210e-1667.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7U217_9STRA2.640e-1651.55Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7R9ZSQ0_9STRA1.260e-1348.96Hypothetical protein (Fragment) n=1 Tax=Craspedost... [more]
A0A485LKA6_9STRA2.000e-1252.63Aste57867_22418 protein n=1 Tax=Aphanomyces stella... [more]
D0NX70_PHYIT2.720e-1251.49MRC1 domain-containing protein n=2 Tax=Phytophthor... [more]
A0A6G0XHK2_9STRA1.280e-1153.85Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A329RLN9_9STRA1.290e-1150.50MRC1 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A8J5JCW2_9STRA1.340e-1150.50MRC1 domain-containing protein n=1 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34805contigH-paniculata_contig34805:372..1346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue5.5e-33
Seed eggNOG ortholog2880.D8LK00
Hectar predicted targeting categoryother localisation
EggNOG OGs28NH7@1,2QV2P@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930075.5542338-CDS-H-paniculata_contig34805:371..6311622930075.5542338-CDS-H-paniculata_contig34805:371..631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34805 372..631 +
1691481136.687964-CDS-H-paniculata_contig34805:371..6311691481136.687964-CDS-H-paniculata_contig34805:371..631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34805 372..631 +
1622930075.5870168-CDS-H-paniculata_contig34805:1225..13461622930075.5870168-CDS-H-paniculata_contig34805:1225..1346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34805 1226..1346 +
1691481136.702374-CDS-H-paniculata_contig34805:1225..13461691481136.702374-CDS-H-paniculata_contig34805:1225..1346Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34805 1226..1346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34805.9281.1prot_H-paniculata_contig34805.9281.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34805 372..1346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34805.9281.1

>prot_H-paniculata_contig34805.9281.1 ID=prot_H-paniculata_contig34805.9281.1|Name=mRNA_H-paniculata_contig34805.9281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
DLEGIVDTFSDDEGDKVAQDTFLNDEAAAGDRQALKDMVRRVREGFGDER
SGRSRGSAARGNLRLDELTAADRSSRKEARRLGLLNSDEEWSDDEKGKGE
DDDLEELDEQQLGELLAKEQRARHMGL
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mRNA from alignment at H-paniculata_contig34805:372..1346+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34805.9281.1 ID=mRNA_H-paniculata_contig34805.9281.1|Name=mRNA_H-paniculata_contig34805.9281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=975bp|location=Sequence derived from alignment at H-paniculata_contig34805:372..1346+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCTGGAAGGCATTGTGGACACATTCTCGGACGATGAAGGAGATAAAGT CGCGCAGGACACATTCCTCAACGACGAGGCCGCCGCCGGCGACCGCCAGG CATTGAAGGACATGGTAAGGCGTGTGCGCGAGGGGTTCGGGGATGAGCGC AGCGGGCGCAGCAGGGGCTCCGCGGCGCGCGGGAACCTGAGGCTGGACGA GTTGACGGCGGCGGACAGGAGCAGTCGGAAGGAGGCGCGACGGCTGGGAT TACTTAACAGGTGGGTGGGTAGGTTGATGAAACTTGGGTTTCTGTTGTTG TTTGTAGGAGGGATTTTGAAGTGACTAGTGTTGGTGTGCCATGGCGATGG AGGTGATGGGTTAATTTTTGTGCACGGCGGCGCCCACTTTGCATCATTTA TCTGCGAAGCTGTGTGTGCACTTTGTTTTGGGTTAAGGCTACGGTACGAG GTGGCAATGCAAAAGCGGAGGAGAGAGGGAGAGAGATAGAGAGATAGAGA GTTGGATGACGAGTGATGGGGAGGTTTCTCAAAGTCACCATTTTTCGATT TCTCTAGTCATGTGGTCATCTTCACTCGTTGGTGGAATGAGTCGACACTC TCGGGGTGACGACAGTATTCAATTATTGTTTTCGTTTTTTTTTTTTAATG TTGTGATACTTTTCGTCAGTAGCATTTTATTTATTTATTTTTGTAATATT ATTATTTGATTTGTTTCATTTTCTTTTGGACTAGGATGAGGCTACTGTTA TTGTTAATTAACCTTATTTTTACCAGTGTTGAAAAAACCCCCCAAAAATT AAGAAGCAAGCAAGCCAAACATATATATATTTCTTCTTGTATTGGTTGTT TCAGTGATGAGGAATGGAGTGACGACGAGAAGGGGAAGGGAGAAGACGAT GACCTAGAGGAACTAGATGAGCAGCAGCTGGGGGAGCTCTTGGCGAAGGA GCAACGCGCGAGGCACATGGGGCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig34805:372..1346+

>mRNA_H-paniculata_contig34805.9281.1 ID=mRNA_H-paniculata_contig34805.9281.1|Name=mRNA_H-paniculata_contig34805.9281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig34805:372..1346+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCTGGAAGGCATTGTGGACACATTCTCGGACGATGAAGGAGATAAAGT
CGCGCAGGACACATTCCTCAACGACGAGGCCGCCGCCGGCGACCGCCAGG
CATTGAAGGACATGGTAAGGCGTGTGCGCGAGGGGTTCGGGGATGAGCGC
AGCGGGCGCAGCAGGGGCTCCGCGGCGCGCGGGAACCTGAGGCTGGACGA
GTTGACGGCGGCGGACAGGAGCAGTCGGAAGGAGGCGCGACGGCTGGGAT
TACTTAACAGGACCTGGAAGGCATTGTGGACACATTCTCGGACGATGAAG
GAGATAAAGTCGCGCAGGACACATTCCTCAACGACGAGGCCGCCGCCGGC
GACCGCCAGGCATTGAAGGACATGGTAAGGCGTGTGCGCGAGGGGTTCGG
GGATGAGCGCAGCGGGCGCAGCAGGGGCTCCGCGGCGCGCGGGAACCTGA
GGCTGGACGAGTTGACGGCGGCGGACAGGAGCAGTCGGAAGGAGGCGCGA
CGGCTGGGATTACTTAACAGTGATGAGGAATGGAGTGACGACGAGAAGGG
GAAGGGAGAAGACGATGACCTAGAGGAACTAGATGAGCAGCAGCTGGGGG
AGCTCTTGGCGAAGGAGCAACGCGCGAGGCACATGGGGCTCTGATGAGGA
ATGGAGTGACGACGAGAAGGGGAAGGGAGAAGACGATGACCTAGAGGAAC
TAGATGAGCAGCAGCTGGGGGAGCTCTTGGCGAAGGAGCAACGCGCGAGG
CACATGGGGCTC
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