mRNA_H-paniculata_contig34798.9278.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34798.9278.1
Unique NamemRNA_H-paniculata_contig34798.9278.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34798.9278.1 vs. uniprot
Match: D8LTT0_ECTSI (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTT0_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 6.070e-33
Identity = 58/79 (73.42%), Postives = 68/79 (86.08%), Query Frame = 1 
Query:    1 QVVFPLGELTKPQVRKLAEVAGLPVAQKRESMGVCFVGKRRSWRGFLSQYVTPRPGNFVCVDTFQVLGAHEGVEFYTRG 237
            +V+FPLG LTKP+VR+LAE  GLPVA+KRESMGVCFVGKRRSW  F+SQY+TP PGNFVCVDT +V+G H GV+ YT G
Sbjct:  201 KVLFPLGGLTKPEVRRLAEEGGLPVARKRESMGVCFVGKRRSWASFISQYLTPSPGNFVCVDTGEVVGRHGGVQLYTVG 279
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BLAST of mRNA_H-paniculata_contig34798.9278.1 vs. uniprot
Match: A0A835YVZ5_9STRA (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVZ5_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.050e-24
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:    4 VVFPLGELTKPQVRKLAEVAGLPVAQKRESMGVCFVGKRRSWRGFLSQYVTPRPGNFVCVDTFQVLGAHEGVEFYTRG 237
            V+FPLG + K +VR+LA  AGL  A K++S+G+CFVG+RRS+ GFLSQY+TP PG+FVC  T   LG HEGVE YT G
Sbjct:  161 VIFPLGGMMKGEVRELAARAGLVTAAKKDSVGICFVGQRRSFGGFLSQYITPTPGDFVCGQTGARLGPHEGVELYTLG 238
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BLAST of mRNA_H-paniculata_contig34798.9278.1 vs. uniprot
Match: A0A067Q2D6_9AGAM (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Jaapia argillacea MUCL 33604 TaxID=933084 RepID=A0A067Q2D6_9AGAM)

HSP 1 Score: 94.7 bits (234), Expect = 2.470e-21
Identity = 40/79 (50.63%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:    1 QVVFPLGELTKPQVRKLAEVAGLPVAQKRESMGVCFVGKRRSWRGFLSQYVTPRPGNFVCVDTFQVLGAHEGVEFYTRG 237
            + +FPLG+ TKPQVR++A+  GLP A++ ESMG+CFVG++R +R FLSQY+TP+PG  V + + + +G H+G+  +T G
Sbjct:  166 KTLFPLGDFTKPQVREMAKKFGLPTAEREESMGICFVGEKRKFRDFLSQYITPKPGRIVDLTSGKTVGIHQGLWDFTIG 244
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BLAST of mRNA_H-paniculata_contig34798.9278.1 vs. uniprot
Match: S7RSV8_GLOTA (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617) TaxID=670483 RepID=S7RSV8_GLOTA)

HSP 1 Score: 94.4 bits (233), Expect = 3.680e-21
Identity = 41/79 (51.90%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:    1 QVVFPLGELTKPQVRKLAEVAGLPVAQKRESMGVCFVGKRRSWRGFLSQYVTPRPGNFVCVDTFQVLGAHEGVEFYTRG 237
            + +FPLG+LTKP+VR +A+  GLP A++ ESMG+CFVG++R +  F+SQYV P+PG+ V ++T +V+G H+G+  YT G
Sbjct:  171 KALFPLGDLTKPEVRAMAKRFGLPTAERAESMGICFVGEKRKFSEFVSQYVPPKPGDIVDLETGKVVGQHQGLWTYTIG 249
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BLAST of mRNA_H-paniculata_contig34798.9278.1 vs. uniprot
Match: A0A7S1CRW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CRW1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.450e-20
Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:    1 QVVFPLGELTKPQVRKLAEVAGLPVAQKRESMGVCFVGKRRSWRGFLSQYVTPRPGNFVCVDTFQVLGAHEGVEFYTRG 237
            +V+FPLGELTKPQVR +AE  GL  A +R+S G+CF+G+RR    FL QY+   PG FV V+   V+GAH GVE +T G
Sbjct:   37 RVLFPLGELTKPQVRAIAEREGLATAARRDSYGICFIGERRL-ADFLPQYIDLHPGRFVSVEDGAVVGAHAGVELWTPG 114
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BLAST of mRNA_H-paniculata_contig34798.9278.1 vs. uniprot
Match: A0A485L065_9STRA (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L065_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.630e-20
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:    1 QVVFPLGELTKPQVRKLAEVAGLPVAQKRESMGVCFVGKRRSWRGFLSQYVTPRPGNFVCVDTFQVLGAHEGVEFYTRG 237
            QV+FPLG LTKPQVR++A  AGL  A K+ESMG+CF+GKR  +  FL+QYV PR G+FV V++  VL  H+G   YT G
Sbjct:  204 QVIFPLGNLTKPQVRQIAADAGLHTAMKKESMGICFIGKR-PFGSFLAQYVPPRRGHFVSVESGNVLHQHDGFSAYTIG 281
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BLAST of mRNA_H-paniculata_contig34798.9278.1 vs. uniprot
Match: A0A165RL46_9AGAM (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165RL46_9AGAM)

HSP 1 Score: 92.0 bits (227), Expect = 2.050e-20
Identity = 38/79 (48.10%), Postives = 60/79 (75.95%), Query Frame = 1 
Query:    1 QVVFPLGELTKPQVRKLAEVAGLPVAQKRESMGVCFVGKRRSWRGFLSQYVTPRPGNFVCVDTFQVLGAHEGVEFYTRG 237
            + +FPLG+LTKP+VR +A+   LP A++ ESMG+CFVG++R +  F+SQYV P+PG+ + + T +++G H+G+  YT G
Sbjct:  171 RALFPLGDLTKPEVRAMAKRYDLPTAEREESMGICFVGEKRKFNEFISQYVPPKPGDIIDITTNEIIGKHQGLWNYTIG 249
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BLAST of mRNA_H-paniculata_contig34798.9278.1 vs. uniprot
Match: A0A5C3MMM6_9AGAM (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Heliocybe sulcata TaxID=5364 RepID=A0A5C3MMM6_9AGAM)

HSP 1 Score: 91.3 bits (225), Expect = 5.430e-20
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:    1 QVVFPLGELTKPQVRKLAEVAGLPVAQKRESMGVCFVGKRRSWRGFLSQYVTPRPGNFVCVDTFQVLGAHEGVEFYTRG 237
            + +FPLG+LTK +VR +A+   LP A++ ESMG+CFVG++  +  FLSQYV P+PG  +  DT QVLG H+G+  YT G
Sbjct:  175 KALFPLGDLTKVEVRAMAKQYSLPTAEREESMGICFVGEKHKFNEFLSQYVPPKPGEIIDFDTDQVLGQHQGLWNYTIG 253
[Close]
BLAST of mRNA_H-paniculata_contig34798.9278.1 vs. uniprot
Match: A0A0C3E0M3_9AGAM (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Scleroderma citrinum Foug A TaxID=1036808 RepID=A0A0C3E0M3_9AGAM)

HSP 1 Score: 89.7 bits (221), Expect = 1.740e-19
Identity = 43/79 (54.43%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:    1 QVVFPLGELTKPQVRKLAEVAGLPVAQKRESMGVCFVGKRRSWRGFLSQYVTPRPGNFVCVDTFQVLGAHEGVEFYTRG 237
            + +FPLGEL K QVR LA  +GLP A K ESMG+CFVG+RR +  FLSQY+ P PG  + + T Q +  HEG+  YT G
Sbjct:  163 RALFPLGELQKTQVRCLAAESGLPTAVKEESMGICFVGERRKFSDFLSQYIPPNPGPIIDMTTCQQIATHEGLWNYTIG 241
[Close]
BLAST of mRNA_H-paniculata_contig34798.9278.1 vs. uniprot
Match: A0A8B8BAI7_CRAVI (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8BAI7_CRAVI)

HSP 1 Score: 89.7 bits (221), Expect = 2.150e-19
Identity = 37/80 (46.25%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    1 QVVFPLGELTKPQVRKLAEVAGLP-VAQKRESMGVCFVGKRRSWRGFLSQYVTPRPGNFVCVDTFQVLGAHEGVEFYTRG 237
            + +FPLG+L K +V+K+A   GL  +A K+ESMG+CF+GKR+ +  F+ +YV P+PGN + V+T +V+G H+G+  Y+ G
Sbjct:  171 RALFPLGDLKKSEVKKIASKIGLTRIASKKESMGICFIGKRKKFSSFMEEYVEPKPGNIIHVETGEVVGTHQGIHNYSEG 250
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34798.9278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTT0_ECTSI6.070e-3373.42tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A835YVZ5_9STRA3.050e-2461.54tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A067Q2D6_9AGAM2.470e-2150.63tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
S7RSV8_GLOTA3.680e-2151.90tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A7S1CRW1_9STRA1.450e-2055.70Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A485L065_9STRA1.630e-2058.23tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A165RL46_9AGAM2.050e-2048.10tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A5C3MMM6_9AGAM5.430e-2051.90tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A0C3E0M3_9AGAM1.740e-1954.43tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]
A0A8B8BAI7_CRAVI2.150e-1946.25tRNA-5-taurinomethyluridine 2-sulfurtransferase n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34798contigH-paniculata_contig34798:376..1454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue9.6e-28
Seed eggNOG ortholog2880.D8LTT0
Preferred nameTRMU
KEGG koko:K21027
Hectar predicted targeting categoryother localisation
GOsGO:0000959,GO:0000963,GO:0002097,GO:0002098,GO:0002143,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0016783,GO:0031974,GO:0031981,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0061708,GO:0070013,GO:0070525,GO:0070899,GO:0070900,GO:0070903,GO:0071704,GO:0090304,GO:0090646,GO:0106054,GO:0140053,GO:0140098,GO:0140101,GO:1900864,GO:1901360,GO:1990799
EggNOG free text desc.mitochondrial tRNA thio-modification
EggNOG OGsCOG0482@1,KOG2805@2759
EC2.8.1.14
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons2
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930075.000095-CDS-H-paniculata_contig34798:375..4461622930075.000095-CDS-H-paniculata_contig34798:375..446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34798 376..446 -
1691481136.3908932-CDS-H-paniculata_contig34798:375..4461691481136.3908932-CDS-H-paniculata_contig34798:375..446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34798 376..446 -
1622930075.0154808-CDS-H-paniculata_contig34798:1288..14541622930075.0154808-CDS-H-paniculata_contig34798:1288..1454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34798 1289..1454 -
1691481136.4073787-CDS-H-paniculata_contig34798:1288..14541691481136.4073787-CDS-H-paniculata_contig34798:1288..1454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34798 1289..1454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34798.9278.1prot_H-paniculata_contig34798.9278.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34798 376..1454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34798.9278.1

>prot_H-paniculata_contig34798.9278.1 ID=prot_H-paniculata_contig34798.9278.1|Name=mRNA_H-paniculata_contig34798.9278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
QVVFPLGELTKPQVRKLAEVAGLPVAQKRESMGVCFVGKRRSWRGFLSQY
VTPRPGNFVCVDTFQVLGAHEGVEFYTRG
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mRNA from alignment at H-paniculata_contig34798:376..1454-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34798.9278.1 ID=mRNA_H-paniculata_contig34798.9278.1|Name=mRNA_H-paniculata_contig34798.9278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1079bp|location=Sequence derived from alignment at H-paniculata_contig34798:376..1454- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTGTGTTTCCCTTGGGGGAGCTCACCAAGCCGCAAGTGCGCAAGCT
CGCAGAGGTGGCGGGGTTGCCCGTGGCGCAAAAGAGAGAAAGCATGGGTG
TGTGCTTCGTTGGCAAGCGTCGTAGCTGGAGAGGCTTCTTGTCTCAATAT
GTTACACCACGTCCCGGTATGTAAACGTTCGTTCTTTAGTTGGTCTTTTT
CCATTGTACGGTGAGCTATTTTGTTCTCCCCGTGCCCGTTCCCCCCCCAC
TGCCCCCATTAATTTTTTACATTGATTTTTTCCGTGAATTTTTTATCAAA
GGAAAGAAATCACAATCCTAATATCGTCCTTGGATGGAAGAGGTATGACT
GGGACTAGCTAAATATGGGTCCAAGTACGATACACCGTTGATTGGACCAT
TCTGAAGTCACTTTATCCTGTTGAATTTTGCCCTCATCTTGGGGCTATAT
AATACGGTTGAATTGCCATTGGGGGGTATTGAATTATTCGAAATTGGGCG
GCGTTCAGAGTCCTAATAAATTCGGACGCCGCACATTTTGCGCTTTTTCT
GGTTGTTGCTGGTTGTTGCTGGTTGTTGCAAATTGGCCTGCTGCATGATT
CAAATTCACTCGCTTTTATTTTGAAGTTTTCGGATGAGCCGGATTTCTCA
ATCCCCCAGAGGCAGAACAGCAACGAACCTCGAGGAGCAGGCCAAGCACC
CCATGCAGGGCAGCCATCTACATGGCCAAATGAGGCAAAGGCAGCACAGA
TCATCTACATAATTCAGAATTTTACTGCAGGAGGTCCCCTCTACCCACCA
TTGGGTGGACTCGGTGCTTGACACCTTCTCAAATTGGACTGACGTACGGA
GCTACAGACAGTTTTCCATGCCTTCGTTTGTTCGGTTTGTGGCTACGAAA
GCCAGTAATATGGAAGTGCCCACCATGCTGTACCTCTGTTTAGCCCCCGC
CTCGCTCCCGATGCCGTTTTGTGCGTGTGTTCGTGTGCATGTGCTGCACA
TTTGACAGGGAATTTTGTGTGTGTGGACACGTTTCAAGTGCTAGGTGCGC
ACGAAGGAGTGGAATTTTATACTAGAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig34798:376..1454-

>mRNA_H-paniculata_contig34798.9278.1 ID=mRNA_H-paniculata_contig34798.9278.1|Name=mRNA_H-paniculata_contig34798.9278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig34798:376..1454- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTGTGTTTCCCTTGGGGGAGCTCACCAAGCCGCAAGTGCGCAAGCT
CGCAGAGGTGGCGGGGTTGCCCGTGGCGCAAAAGAGAGAAAGCATGGGTG
TGTGCTTCGTTGGCAAGCGTCGTAGCTGGAGAGGCTTCTTGTCTCAATAT
GTTACACCACGTCCCGCAGGTTGTGTTTCCCTTGGGGGAGCTCACCAAGC
CGCAAGTGCGCAAGCTCGCAGAGGTGGCGGGGTTGCCCGTGGCGCAAAAG
AGAGAAAGCATGGGTGTGTGCTTCGTTGGCAAGCGTCGTAGCTGGAGAGG
CTTCTTGTCTCAATATGTTACACCACGTCCCGGGAATTTTGTGTGTGTGG
ACACGTTTCAAGTGCTAGGTGCGCACGAAGGAGTGGAATTTTATACTAGA
GGTGGAATTTTGTGTGTGTGGACACGTTTCAAGTGCTAGGTGCGCACGAA
GGAGTGGAATTTTATACTAGAGGT
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