mRNA_H-paniculata_contig11422.926.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11422.926.1
Unique NamemRNA_H-paniculata_contig11422.926.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11422.926.1 vs. uniprot
Match: A0A6H5KF39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF39_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 3.940e-48
Identity = 82/154 (53.25%), Postives = 105/154 (68.18%), Query Frame = 2 
Query:    5 PGSNSKKINTELLYKYEANTVTVSRET--EGAIERK*VDSFNFEVPQEPGSSFPNGKSKNGVNMAEVALATRAYLQVHRPELLIEHVENFMNTHGWQLMWTPPYMLKFQPIELFWQHGKQYVSFRYDTKRNMQQVWEKIRLGWYGDKDWRDKRG 460
            P +N+KK N +LL  + A ++ V R+   +G +E      +NFEVP EPGSSFP G  + GV+ AEVA ATR Y+ ++ PE L E V  FM   GW L+WTPPYM  FQPIELFWQHGKQYVS  ++ KR M++VW +IR GWYGDK+W  + G
Sbjct:  119 PETNTKKHNVDLLRMFGAKSMRVRRKEGEQGVVE------YNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEG 266
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BLAST of mRNA_H-paniculata_contig11422.926.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.010e-47
Identity = 83/153 (54.25%), Postives = 103/153 (67.32%), Query Frame = 2 
Query:    5 PGSNSKKINTELLYKYEANTVTVSR-ETEGAIERK*VDSFNFEVPQEPGSSFPNGKSKNGVNMAEVALATRAYLQVHRPELLIEHVENFMNTHGWQLMWTPPYMLKFQPIELFWQHGKQYVSFRYDTKRNMQQVWEKIRLGWYGDKDWRDKRG 460
            P SN+KK N +LL  + A ++ V R E E  +       +NFEVP EPGSSFP G  + GV+ AEVA ATR Y+ ++ PE L E V  FM   GW L+WTPPYM  FQPIELFWQHGKQYVS  ++ KR M++VW +IR GWYGDK+W  + G
Sbjct:  146 PESNTKKHNVDLLRMFGAKSIRVKRKEGEQGV-------YNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEG 291
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BLAST of mRNA_H-paniculata_contig11422.926.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 2.110e-46
Identity = 82/154 (53.25%), Postives = 104/154 (67.53%), Query Frame = 2 
Query:    5 PGSNSKKINTELLYKYEANTVTVSRET--EGAIERK*VDSFNFEVPQEPGSSFPNGKSKNGVNMAEVALATRAYLQVHRPELLIEHVENFMNTHGWQLMWTPPYMLKFQPIELFWQHGKQYVSFRYDTKRNMQQVWEKIRLGWYGDKDWRDKRG 460
            P SN+KK N +LL  + A ++ V R+   +G +E      +N EVP EPGSSFP G  + GV+ AEVA ATR Y+ ++ PE L E V  FM   GW L+WTPPYM  FQPIELFWQHGKQYVS +++ KR M++VW +IR GWYGDK W  + G
Sbjct:  299 PESNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVE------YNLEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLKFELKRKMREVWVQIRKGWYGDKAWPGQEG 446
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BLAST of mRNA_H-paniculata_contig11422.926.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 2.990e-46
Identity = 83/154 (53.90%), Postives = 106/154 (68.83%), Query Frame = 2 
Query:    5 PGSNSKKINTELLYKYEANTVTVSRET--EGAIERK*VDSFNFEVPQEPGSSFPNGKSKNGVNMAEVALATRAYLQVHRPELLIEHVENFMNTHGWQLMWTPPYMLKFQPIELFWQHGKQYVSFRYDTKRNMQQVWEKIRLGWYGDKDWRDKRG 460
            P +N+KK N +LL K+ A ++ V R+   +G +E       NFEVP EPGSSFP G  + GV+ AEVA ATR Y++++ PE L E V  FM   GW L+WTPPYM  FQPIELFWQHGKQYVS  ++ KR M++VW +IR GWYGDK+W  + G
Sbjct:  450 PETNTKKHNVDLLRKFGAKSIRVKRKEGEQGFVEH------NFEVPSEPGSSFPAGNREGGVSRAEVATATREYIRLNYPERLEERVVTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRQGWYGDKEWSGQEG 597
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BLAST of mRNA_H-paniculata_contig11422.926.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 4.040e-46
Identity = 82/154 (53.25%), Postives = 105/154 (68.18%), Query Frame = 2 
Query:    5 PGSNSKKINTELLYKYEANTVTVSRET--EGAIERK*VDSFNFEVPQEPGSSFPNGKSKNGVNMAEVALATRAYLQVHRPELLIEHVENFMNTHGWQLMWTPPYMLKFQPIELFWQHGKQYVSFRYDTKRNMQQVWEKIRLGWYGDKDWRDKRG 460
            P +N+KK N +LL  + A ++ V R+   +G +E      +NFEVP EPGSSFP G  + GV+ AEVA ATR Y+ ++ PE L E V  FM   GW L+WTPPYM  FQPIELFWQHGKQYVS  ++ KR M++VW +IR GWYGDK+W  + G
Sbjct:  416 PETNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVE------YNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEG 563
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BLAST of mRNA_H-paniculata_contig11422.926.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 4.500e-46
Identity = 82/154 (53.25%), Postives = 105/154 (68.18%), Query Frame = 2 
Query:    5 PGSNSKKINTELLYKYEANTVTVSRET--EGAIERK*VDSFNFEVPQEPGSSFPNGKSKNGVNMAEVALATRAYLQVHRPELLIEHVENFMNTHGWQLMWTPPYMLKFQPIELFWQHGKQYVSFRYDTKRNMQQVWEKIRLGWYGDKDWRDKRG 460
            P +N+KK N +LL  + A ++ V R+   +G +E      +NFEVP EPGSSFP G  + GV+ AEVA ATR Y+ ++ PE L E V  FM   GW L+WTPPYM  FQPIELFWQHGKQYVS  ++ KR M++VW +IR GWYGDK+W  + G
Sbjct:  426 PETNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVE------YNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEG 573
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BLAST of mRNA_H-paniculata_contig11422.926.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 7.780e-46
Identity = 81/154 (52.60%), Postives = 104/154 (67.53%), Query Frame = 2 
Query:    5 PGSNSKKINTELLYKYEANTVTVSRET--EGAIERK*VDSFNFEVPQEPGSSFPNGKSKNGVNMAEVALATRAYLQVHRPELLIEHVENFMNTHGWQLMWTPPYMLKFQPIELFWQHGKQYVSFRYDTKRNMQQVWEKIRLGWYGDKDWRDKRG 460
            P +N+KK N +LL  + A ++ V R+   +G +E      +N EVP EPGSSFP G  + GV+ AEVA ATR Y+ ++ PE L E V  FM   GW L+WTPPYM  FQPIELFWQHGKQYVS  ++ KR M++VW +IR GWYGDK+W  + G
Sbjct:  315 PETNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVE------YNLEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEG 462
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BLAST of mRNA_H-paniculata_contig11422.926.1 vs. uniprot
Match: A0A6H5KKL0_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL0_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 3.680e-44
Identity = 80/154 (51.95%), Postives = 103/154 (66.88%), Query Frame = 2 
Query:    5 PGSNSKKINTELLYKYEANTVTVSRET--EGAIERK*VDSFNFEVPQEPGSSFPNGKSKNGVNMAEVALATRAYLQVHRPELLIEHVENFMNTHGWQLMWTPPYMLKFQPIELFWQHGKQYVSFRYDTKRNMQQVWEKIRLGWYGDKDWRDKRG 460
            P +N+KK N +LL  + A ++ V R+   +G +E       NFEVP EPGSSFP G  + GV+ AEVA ATR Y+ ++ PE L E V  FM   G  L+WTPPYM  FQPIELFWQHGKQYVS  ++ KR +++VW +IR GWYGDK+W  + G
Sbjct:  311 PETNTKKHNVDLLRMFGAKSIRVKRKEGEQGVVEE------NFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGLALIWTPPYMPSFQPIELFWQHGKQYVSVNFELKRKVREVWVQIRKGWYGDKEWPGQEG 458
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BLAST of mRNA_H-paniculata_contig11422.926.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 2.300e-43
Identity = 90/179 (50.28%), Postives = 110/179 (61.45%), Query Frame = 2 
Query:    5 PGSNSKKINTELLYKYEANTVTVSRE-TEGAIERK*VDSFNFEVPQEPGSSFPNGKSK--NGVNMAEVALATRAYLQVHRPELLIEHVENFMNTHGWQLMWTPPYMLKFQPIELFWQHGKQYVSFRYDTKRNMQQVWEKIRLGWYGDKDWRDKRG-----DGTQLTALTWSNIPSNIWI 517
            P SNSK  NT LL KY+   +TV RE T  A  R     + F+VP     +FP   SK   GV+  EVALATRA+ Q+  P  L+E VE FMN  GWQL+WTPPYM  FQPIELFWQHGKQYVSF + TKR M +VW ++R GWYGD  W  ++G     D ++L A     +  N W+
Sbjct:  418 PESNSKGYNTALLRKYKCRKITVEREVTSSAGVRS--KKYTFQVPAT--GTFPQANSKCGKGVSGPEVALATRAFFQLKHPTKLMEKVETFMNGRGWQLIWTPPYMPSFQPIELFWQHGKQYVSFNFKTKRTMAEVWAQVRKGWYGDPTWEGQKGGWKPADCSKLVAHAVKEM--NKWV 590
[Close]
BLAST of mRNA_H-paniculata_contig11422.926.1 vs. uniprot
Match: A0A6H5LE74_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE74_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 3.630e-42
Identity = 77/152 (50.66%), Postives = 96/152 (63.16%), Query Frame = 2 
Query:    5 PGSNSKKINTELLYKYEANTVTVSRETEGAIERK*VDSFNFEVPQEPGSSFPNGKSKNGVNMAEVALATRAYLQVHRPELLIEHVENFMNTHGWQLMWTPPYMLKFQPIELFWQHGKQYVSFRYDTKRNMQQVWEKIRLGWYGDKDWRDKRG 460
            P +NSKK N ELL KY   +  V+RE+EG         +NFEVP +   S PN   KNGV+  E+A  TR Y + + P+ L E  E +M   GW L+WTPPYM  FQPIELFWQHGK YVS  ++  RNM  VW++IRLGWYGD +W  + G
Sbjct:  263 PETNSKKYNVELLRKYGCTSFKVTRESEGKAAE-----YNFEVPAQ--GSLPNANRKNGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRNMLDVWKQIRLGWYGDPEWDGQEG 407
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11422.926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KF39_9PHAE3.940e-4853.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHE7_9PHAE1.010e-4754.25DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5KDX7_9PHAE2.110e-4653.25DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LNM6_ECTSI2.990e-4653.90DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5KIM5_9PHAE4.040e-4653.25DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5JR41_9PHAE4.500e-4653.25DDE_3 domain-containing protein n=5 Tax=Ectocarpus... [more]
A0A6H5K024_9PHAE7.780e-4652.60DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KKL0_9PHAE3.680e-4451.95DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
D8LQ25_ECTSI2.300e-4350.28Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5LE74_9PHAE3.630e-4250.66Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11422contigH-paniculata_contig11422:2566..3161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size596
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11422.926.1prot_H-paniculata_contig11422.926.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11422 2753..3088 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928851.1895318-UTR-H-paniculata_contig11422:2565..27521622928851.1895318-UTR-H-paniculata_contig11422:2565..2752Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11422 2566..2752 +
1691480644.4909472-UTR-H-paniculata_contig11422:2565..27521691480644.4909472-UTR-H-paniculata_contig11422:2565..2752Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11422 2566..2752 +
1622928851.2164779-UTR-H-paniculata_contig11422:3088..31611622928851.2164779-UTR-H-paniculata_contig11422:3088..3161Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11422 3089..3161 +
1691480644.5109777-UTR-H-paniculata_contig11422:3088..31611691480644.5109777-UTR-H-paniculata_contig11422:3088..3161Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11422 3089..3161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928851.2013109-CDS-H-paniculata_contig11422:2752..30881622928851.2013109-CDS-H-paniculata_contig11422:2752..3088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11422 2753..3088 +
1691480644.5011494-CDS-H-paniculata_contig11422:2752..30881691480644.5011494-CDS-H-paniculata_contig11422:2752..3088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11422 2753..3088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11422.926.1

>prot_H-paniculata_contig11422.926.1 ID=prot_H-paniculata_contig11422.926.1|Name=mRNA_H-paniculata_contig11422.926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MAEVALATRAYLQVHRPELLIEHVENFMNTHGWQLMWTPPYMLKFQPIEL
FWQHGKQYVSFRYDTKRNMQQVWEKIRLGWYGDKDWRDKRGDGTQLTALT
WSNIPSNIWIG*
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mRNA from alignment at H-paniculata_contig11422:2566..3161+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11422.926.1 ID=mRNA_H-paniculata_contig11422.926.1|Name=mRNA_H-paniculata_contig11422.926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=596bp|location=Sequence derived from alignment at H-paniculata_contig11422:2566..3161+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGCCGGGGTCTAACAGCAAGAAGATCAACACCGAACTTCTTTACAAGT
ACGAAGCTAACACAGTTACTGTCAGCCGCGAAACGGAGGGCGCCATCGAA
CGGAAATAAGTTGATAGCTTCAACTTCGAAGTACCCCAAGAGCCCGGGTC
TTCGTTCCCCAACGGCAAGTCGAAGAACGGCGTTAACATGGCCGAGGTGG
CGTTGGCTACTCGTGCGTACCTGCAGGTTCATCGTCCCGAACTGTTGATT
GAGCATGTAGAAAATTTCATGAACACGCACGGTTGGCAGCTAATGTGGAC
ACCGCCGTACATGCTCAAATTCCAGCCAATTGAGCTATTCTGGCAACACG
GCAAGCAGTATGTCAGCTTTCGGTACGACACAAAGCGAAACATGCAGCAG
GTGTGGGAGAAGATTCGCTTGGGTTGGTATGGGGACAAGGACTGGAGAGA
CAAGAGGGGGGATGGCACCCAGCTAACTGCGCTAACTTGGTCAAACATAC
CATCAAATATATGGATCGGTTGATAGAAGACGATATTCTCGGGGGTAAGA
TCGGTTCGCTCATCGTTCCCGGCTGTTACGATGAGGACAGCGTTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig11422:2566..3161+

>mRNA_H-paniculata_contig11422.926.1 ID=mRNA_H-paniculata_contig11422.926.1|Name=mRNA_H-paniculata_contig11422.926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig11422:2566..3161+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGAGGTGGCGTTGGCTACTCGTGCGTACCTGCAGGTTCATCGTCC
CGAACTGTTGATTGAGCATGTAGAAAATTTCATGAACACGCACGGTTGGC
AGCTAATGTGGACACCGCCGTACATGCTCAAATTCCAGCCAATTGAGCTA
TTCTGGCAACACGGCAAGCAGTATGTCAGCTTTCGGTACGACACAAAGCG
AAACATGCAGCAGGTGTGGGAGAAGATTCGCTTGGGTTGGTATGGGGACA
AGGACTGGAGAGACAAGAGGGGGGATGGCACCCAGCTAACTGCGCTAACT
TGGTCAAACATACCATCAAATATATGGATCGGTTGAATGGCCGAGGTGGC
GTTGGCTACTCGTGCGTACCTGCAGGTTCATCGTCCCGAACTGTTGATTG
AGCATGTAGAAAATTTCATGAACACGCACGGTTGGCAGCTAATGTGGACA
CCGCCGTACATGCTCAAATTCCAGCCAATTGAGCTATTCTGGCAACACGG
CAAGCAGTATGTCAGCTTTCGGTACGACACAAAGCGAAACATGCAGCAGG
TGTGGGAGAAGATTCGCTTGGGTTGGTATGGGGACAAGGACTGGAGAGAC
AAGAGGGGGGATGGCACCCAGCTAACTGCGCTAACTTGGTCAAACATACC
ATCAAATATATGGATCGGTTGA
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