mRNA_H-paniculata_contig11422.925.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig11422.925.1
Unique Name	mRNA_H-paniculata_contig11422.925.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig11422.925.1 vs. uniprot
Match: A0A6H5KZM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM0_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.570e-31
Identity = 59/108 (54.63%), Postives = 76/108 (70.37%), Query Frame = 1

Query:    4 TADDQRVGSRKVYSIRAFWWKEKDLLGSLGSGRGIIKTTNDGRQVLDDSQVAKVHTFISSKRDPGQQVSRRTVGEFIAEECGHKMSNRAVGGMLHRVGYRRRQGRIKV 327
            TA   RVG  KV+ +RA WW++ +LL S   GRG + +  DGR++LDD Q A +  FIS K + GQQV RRTV E+I E C   +SNRAVGG+L+R+GYRRR GRIK+
Sbjct:  128 TAATLRVGKDKVFKVRAHWWEKTELLASSAEGRG-VSSGKDGRKLLDDVQCASLRAFISDKHENGQQVFRRTVREWIKERCNKDLSNRAVGGLLYRIGYRRRGGRIKI 234

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BLAST of mRNA_H-paniculata_contig11422.925.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 5.950e-31
Identity = 59/108 (54.63%), Postives = 77/108 (71.30%), Query Frame = 1

Query:    4 TADDQRVGSRKVYSIRAFWWKEKDLLGSLGSGRGIIKTTNDGRQVLDDSQVAKVHTFISSKRDPGQQVSRRTVGEFIAEECGHKMSNRAVGGMLHRVGYRRRQGRIKV 327
            TA   RVG  KV+ +RA WW++ +LL S   GRG + +  DGR++LDD Q A +  FIS K + GQQV RRTV E+I E C   +SNRAVGG+L+R+GYRRR+GRIK+
Sbjct:  128 TASTLRVGKDKVFKVRAHWWEKTELLTSSAEGRG-VSSGKDGRKLLDDVQCANLRAFISDKHENGQQVFRRTVREWIKETCNKDLSNRAVGGLLYRIGYRRRRGRIKI 234

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BLAST of mRNA_H-paniculata_contig11422.925.1 vs. uniprot
Match: A0A6H5K4F5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4F5_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.590e-22
Identity = 43/103 (41.75%), Postives = 70/103 (67.96%), Query Frame = 1

Query:   19 RVGSRKVYSIRAFWWKEKDLLGSLGSGRGIIKTTNDGRQVLDDSQVAKVHTFISSKRDPGQQVSRRTVGEFIAEECGHKMSNRAVGGMLHRVGYRRRQGRIKV 327
            R+G+ KV ++R  W+ +++L  + G GRG   + +DGR+V+   Q   +  FI  + + G+QV RRTV +++    G +MSNRAVGG+L R+G++RR+GRIK+
Sbjct:  167 RIGTDKVLAVRTLWYDKQELYETNGKGRGKATSVDDGRRVITKEQEDGLREFIKGEHEAGRQVFRRTVKDYLECSFGLEMSNRAVGGLLQRLGFKRRRGRIKI 269

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BLAST of mRNA_H-paniculata_contig11422.925.1 vs. uniprot
Match: A0A6H5KKV8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV8_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 3.880e-21
Identity = 43/103 (41.75%), Postives = 70/103 (67.96%), Query Frame = 1

Query:   19 RVGSRKVYSIRAFWWKEKDLLGSLGSGRGIIKTTNDGRQVLDDSQVAKVHTFISSKRDPGQQVSRRTVGEFIAEECGHKMSNRAVGGMLHRVGYRRRQGRIKV 327
            R+G+ KV ++R  W+ +++L  + G GRG   + +DGR+V+   Q   +  FI  + + G+QV RRTV +++    G +MSNRAVGG+L R+G++RR+GRIK+
Sbjct:   12 RIGTDKVLAVRILWYYKQELYETNGKGRGKATSFDDGRRVITKEQEDGLREFIKGEHEAGRQVFRRTVKDYLECSFGLEMSNRAVGGLLQRLGFKRRRGRIKI 114

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BLAST of mRNA_H-paniculata_contig11422.925.1 vs. uniprot
Match: A0A6H5KDX2_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX2_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.970e-21
Identity = 43/103 (41.75%), Postives = 70/103 (67.96%), Query Frame = 1

Query:   19 RVGSRKVYSIRAFWWKEKDLLGSLGSGRGIIKTTNDGRQVLDDSQVAKVHTFISSKRDPGQQVSRRTVGEFIAEECGHKMSNRAVGGMLHRVGYRRRQGRIKV 327
            R+G+ KV ++R  W+ +++L  + G GRG   + +DGR+V+   Q   +  FI  + + G+QV RRTV +++    G +MSNRAVGG+L R+G++RR+GRIK+
Sbjct:  133 RIGTDKVLAVRTLWYDKQELYETNGKGRGKATSVDDGRRVITKEQEDGLREFIKGEHEAGRQVFRRTVKDYLECSFGLEMSNRAVGGLLQRLGFKRRRGRIKI 235

[Close]

BLAST of mRNA_H-paniculata_contig11422.925.1 vs. uniprot
Match: A0A6H5K8G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8G5_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 9.940e-21
Identity = 42/103 (40.78%), Postives = 68/103 (66.02%), Query Frame = 1

Query:   19 RVGSRKVYSIRAFWWKEKDLLGSLGSGRGIIKTTNDGRQVLDDSQVAKVHTFISSKRDPGQQVSRRTVGEFIAEECGHKMSNRAVGGMLHRVGYRRRQGRIKV 327
            R+G+ KV ++R  W+ +++L  + G GRG   + +DGR+V+   Q   +  FI  + + G+QV RRT  +++   CG +MSNRAVGG+L R+G+ R +GRIK+
Sbjct:  133 RIGTDKVLAVRTLWYDKQELYETNGKGRGKATSFDDGRRVITKEQEDGLREFIKGEHEAGRQVFRRTGKDYLECSCGLEMSNRAVGGLLQRLGFERCRGRIKI 235

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BLAST of mRNA_H-paniculata_contig11422.925.1 vs. uniprot
Match: A0A6H5KF48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF48_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.730e-20
Identity = 42/103 (40.78%), Postives = 70/103 (67.96%), Query Frame = 1

Query:   19 RVGSRKVYSIRAFWWKEKDLLGSLGSGRGIIKTTNDGRQVLDDSQVAKVHTFISSKRDPGQQVSRRTVGEFIAEECGHKMSNRAVGGMLHRVGYRRRQGRIKV 327
            R+G+ KV ++R  W+ +++L  + G GRG   + +DGR+V+       ++ FI  + + G+QV RRTV +++    G +MSNRAVGG+L R+G++RR+GRIK+
Sbjct:   12 RIGTDKVLAVRTLWYDKQELYETNGKGRGKANSVDDGRRVITKETEDGLNEFIKGEHEAGRQVFRRTVKDYLECSFGLEMSNRAVGGLLQRLGFKRRRGRIKI 114

[Close]

BLAST of mRNA_H-paniculata_contig11422.925.1 vs. uniprot
Match: A0A6H5KCN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN2_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.920e-20
Identity = 42/103 (40.78%), Postives = 69/103 (66.99%), Query Frame = 1

Query:   19 RVGSRKVYSIRAFWWKEKDLLGSLGSGRGIIKTTNDGRQVLDDSQVAKVHTFISSKRDPGQQVSRRTVGEFIAEECGHKMSNRAVGGMLHRVGYRRRQGRIKV 327
            R+G+  V ++R  W+ +++L  + G GRG   + +DGR+V+   Q   +  FI  + + G+QV RRTV +++    G +MSNRAVGG+L R+G++RR+GRIK+
Sbjct:   12 RIGTDNVLAVRTLWYDKQELYETNGKGRGKATSFDDGRRVITKEQEDGLREFIKGEHEAGRQVFRRTVKDYLECSFGLEMSNRAVGGLLQRLGFKRRRGRIKI 114

[Close]

BLAST of mRNA_H-paniculata_contig11422.925.1 vs. uniprot
Match: A0A6H5KP14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP14_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.250e-20
Identity = 42/101 (41.58%), Postives = 68/101 (67.33%), Query Frame = 1

Query:   25 GSRKVYSIRAFWWKEKDLLGSLGSGRGIIKTTNDGRQVLDDSQVAKVHTFISSKRDPGQQVSRRTVGEFIAEECGHKMSNRAVGGMLHRVGYRRRQGRIKV 327
            G+ KV ++R  W+ +++L  + G GRG   + +DGR+V+   Q   +  FI  + + G+QV RRTV +++    G +MSNRAVGG+L R+G++RR+GRIK+
Sbjct:   58 GTDKVLAVRTLWYDKQELYETNGKGRGKATSVDDGRRVITQEQEDGLREFIKGEHEAGRQVFRRTVKDYLECSFGLEMSNRAVGGLLQRLGFKRRRGRIKI 158

[Close]

BLAST of mRNA_H-paniculata_contig11422.925.1 vs. uniprot
Match: A0A6H5KGL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL0_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.420e-19
Identity = 42/103 (40.78%), Postives = 69/103 (66.99%), Query Frame = 1

Query:   19 RVGSRKVYSIRAFWWKEKDLLGSLGSGRGIIKTTNDGRQVLDDSQVAKVHTFISSKRDPGQQVSRRTVGEFIAEECGHKMSNRAVGGMLHRVGYRRRQGRIKV 327
            R+G+ +V ++R  W+ +++L  + G GRG   + +DGR+V+   Q   ++ FI  + + G+QV RRTV + +    G +MSNRAVGG L R+G++RR+GRIK+
Sbjct:  126 RIGTDEVLTVRTLWYDKQELYETNGKGRGKATSVDDGRRVITKEQEDGLNEFIKGEHEAGRQVFRRTVKDCLECLYGLEMSNRAVGGFLQRLGFKRRRGRIKI 228

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig11422.925.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig11422.925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KZM0_9PHAE	1.570e-31	54.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LQ25_ECTSI	5.950e-31	54.63	Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8...	[more]
A0A6H5K4F5_9PHAE	4.590e-22	41.75	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KKV8_9PHAE	3.880e-21	41.75	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KDX2_9PHAE	4.970e-21	41.75	Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K8G5_9PHAE	9.940e-21	40.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KF48_9PHAE	1.730e-20	40.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCN2_9PHAE	3.920e-20	40.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KP14_9PHAE	5.250e-20	41.58	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KGL0_9PHAE	1.420e-19	40.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig11422	contig	H-paniculata_contig11422:1669..2004 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	336
Cds size	336
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928851.1478536-CDS-H-paniculata_contig11422:1668..2004	1622928851.1478536-CDS-H-paniculata_contig11422:1668..2004	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig11422 1669..2004 +
1691480644.480357-CDS-H-paniculata_contig11422:1668..2004	1691480644.480357-CDS-H-paniculata_contig11422:1668..2004	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig11422 1669..2004 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig11422.925.1	prot_H-paniculata_contig11422.925.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig11422 1669..2004 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig11422:1669..2004+
coding sequence from alignment at H-paniculata_contig11422:1669..2004+

protein sequence of mRNA_H-paniculata_contig11422.925.1

>prot_H-paniculata_contig11422.925.1 ID=prot_H-paniculata_contig11422.925.1|Name=mRNA_H-paniculata_contig11422.925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
LTADDQRVGSRKVYSIRAFWWKEKDLLGSLGSGRGIIKTTNDGRQVLDDS
QVAKVHTFISSKRDPGQQVSRRTVGEFIAEECGHKMSNRAVGGMLHRVGY
RRRQGRIKVSSP

mRNA from alignment at H-paniculata_contig11422:1669..2004+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig11422.925.1 ID=mRNA_H-paniculata_contig11422.925.1|Name=mRNA_H-paniculata_contig11422.925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=336bp|location=Sequence derived from alignment at H-paniculata_contig11422:1669..2004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTACTGCCGATGACCAACGCGTCGGTTCAAGAAAAGTATACAGCATTCG
TGCGTTTTGGTGGAAAGAAAAGGATCTGCTGGGTTCATTGGGAAGTGGGC
GCGGTATAATAAAAACAACGAATGATGGACGACAGGTACTCGACGACTCG
CAGGTCGCAAAAGTCCACACATTCATCAGCAGCAAACGCGATCCTGGGCA
GCAGGTGTCCCGACGCACAGTGGGGGAGTTTATTGCGGAAGAGTGCGGCC
ACAAGATGTCAAACCGTGCAGTTGGGGGGATGCTGCACCGGGTTGGCTAC
AGACGCCGTCAGGGGAGGATCAAGGTCTCAAGCCCA

Coding sequence (CDS) from alignment at H-paniculata_contig11422:1669..2004+

>mRNA_H-paniculata_contig11422.925.1 ID=mRNA_H-paniculata_contig11422.925.1|Name=mRNA_H-paniculata_contig11422.925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig11422:1669..2004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTACTGCCGATGACCAACGCGTCGGTTCAAGAAAAGTATACAGCATTCG
TGCGTTTTGGTGGAAAGAAAAGGATCTGCTGGGTTCATTGGGAAGTGGGC
GCGGTATAATAAAAACAACGAATGATGGACGACAGGTACTCGACGACTCG
CAGGTCGCAAAAGTCCACACATTCATCAGCAGCAAACGCGATCCTGGGCA
GCAGGTGTCCCGACGCACAGTGGGGGAGTTTATTGCGGAAGAGTGCGGCC
ACAAGATGTCAAACCGTGCAGTTGGGGGGATGCTGCACCGGGTTGGCTAC
AGACGCCGTCAGGGGAGGATCAAGGTCTCAAGCCCACTTACTGCCGATGA
CCAACGCGTCGGTTCAAGAAAAGTATACAGCATTCGTGCGTTTTGGTGGA
AAGAAAAGGATCTGCTGGGTTCATTGGGAAGTGGGCGCGGTATAATAAAA
ACAACGAATGATGGACGACAGGTACTCGACGACTCGCAGGTCGCAAAAGT
CCACACATTCATCAGCAGCAAACGCGATCCTGGGCAGCAGGTGTCCCGAC
GCACAGTGGGGGAGTTTATTGCGGAAGAGTGCGGCCACAAGATGTCAAAC
CGTGCAGTTGGGGGGATGCTGCACCGGGTTGGCTACAGACGCCGTCAGGG
GAGGATCAAGGTCTCAAGCCCA