mRNA_H-paniculata_contig34681.9248.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34681.9248.1
Unique NamemRNA_H-paniculata_contig34681.9248.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34681.9248.1 vs. uniprot
Match: A0A8F0F779_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F779_9PHAE)

HSP 1 Score: 1042 bits (2694), Expect = 0.000e+0
Identity = 521/583 (89.37%), Postives = 552/583 (94.68%), Query Frame = 1
Query:    1 DEFMLVDRSRGDFMAVSAFQVLSNRSSHIALLEHDDANRALMGSNMQRQAVPLLYPQKPIIGTGLESKIAADSRVVLINAFEGIVNFVSADRIIVLNNRSNGSSKIYFLDKYRRSNQETIINQKPLIWPGQLVKSGQILADGPGTDEGELSLGQNLRVAYMPWEGYNYEDAILISERLVSGDLFTSIHIEKYDLQISEANSTIDELTREIPNVELDGLMNLDINGIIKKGSFVKGGDILVGKITPTKESEELPESKLLRAVFNIKSPEPKDTSLRLPKSISGRVIEIQTASRAKGDNLSFGVEHWICISIAQIKKIRIGDKMSGRHGNKGVISKIIPREDMPFLPDGTLIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNQRFKIVPFDEMYEPDASRMLINQTLEKASFQTNKMWLYNSSSPGKILLRDGRTGDIFDNPITVGKPYLLKLIHLVDKKMHARSTGTYSLITQQPLKGKAKNGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDINGRNEVFNAIIKGHPIPKPGIPESFKVLLLELNALGLDITTNQLGKLENGEIDLYNVNLMSYIRSKLI 1749
            DEFMLVD S  +F+AVS  Q+L+  SS I  LEHDDANRALMGSNMQRQAVPLLYPQKPIIGTGLE KIAADSRVVLINAFEGIVNFVSADRII+LNN + GSSKIYFLDKYRRSNQETIINQKPLIWPGQ+VKSGQILADGP TDEGEL+LGQNLRVAYMPWEGYNYEDAILISERLVS DLFTSIHIEKYDLQISEANS IDELT +I +VE + L+NLD+NGII+KG+FVKGGDILVGKITP KESEELPESKLLRAVFNIKSP+PKDTSLR+P  +SGRVIEIQTASRAKGDNLS GVEHW+C+SIAQIKKIRIGDKMSGRHGNKGVISKIIPREDMPFLPDGTLIDVILNPLGVPSRMNVGQIFECLLGFAGDYLN RFK++PFDEMYEPDASRMLINQTLEKAS QTNK WLY SSSPGKILL DGRTGDIFDNPITVGKPYLLKLIHLVDKK+HARSTG YSL+TQQPLKGKA+NGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDINGR+EVFNAIIKGHPIPKPGIPESFKVLLLELNALGLDITTNQLGKLENGEID Y+VNLM+Y+RS+L+
Sbjct:  515 DEFMLVDASSVNFIAVSPIQILAIGSSLIPFLEHDDANRALMGSNMQRQAVPLLYPQKPIIGTGLEHKIAADSRVVLINAFEGIVNFVSADRIIILNNGNIGSSKIYFLDKYRRSNQETIINQKPLIWPGQIVKSGQILADGPATDEGELALGQNLRVAYMPWEGYNYEDAILISERLVSADLFTSIHIEKYDLQISEANSAIDELTNKIADVEPEVLVNLDVNGIIRKGTFVKGGDILVGKITPIKESEELPESKLLRAVFNIKSPDPKDTSLRVPHGVSGRVIEIQTASRAKGDNLSLGVEHWVCVSIAQIKKIRIGDKMSGRHGNKGVISKIIPREDMPFLPDGTLIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNHRFKVIPFDEMYEPDASRMLINQTLEKASLQTNKTWLYTSSSPGKILLTDGRTGDIFDNPITVGKPYLLKLIHLVDKKIHARSTGPYSLVTQQPLKGKARNGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDINGRHEVFNAIIKGHPIPKPGIPESFKVLLLELNALGLDITTNQLGKLENGEIDSYHVNLMAYVRSRLL 1097          
BLAST of mRNA_H-paniculata_contig34681.9248.1 vs. uniprot
Match: A0A140G1K0_UNDPI (DNA-directed RNA polymerase subunit beta n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A140G1K0_UNDPI)

HSP 1 Score: 928 bits (2399), Expect = 0.000e+0
Identity = 451/583 (77.36%), Postives = 526/583 (90.22%), Query Frame = 1
Query:    1 DEFMLVDRSRGDFMAVSAFQVLSNRSSHIALLEHDDANRALMGSNMQRQAVPLLYPQKPIIGTGLESKIAADSRVVLINAFEGIVNFVSADRIIVLNNRSNGSSKIYFLDKYRRSNQETIINQKPLIWPGQLVKSGQILADGPGTDEGELSLGQNLRVAYMPWEGYNYEDAILISERLVSGDLFTSIHIEKYDLQISEANSTIDELTREIPNVELDGLMNLDINGIIKKGSFVKGGDILVGKITPTKESEELPESKLLRAVFNIKSPEPKDTSLRLPKSISGRVIEIQTASRAKGDNLSFGVEHWICISIAQIKKIRIGDKMSGRHGNKGVISKIIPREDMPFLPDGTLIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNQRFKIVPFDEMYEPDASRMLINQTLEKASFQTNKMWLYNSSSPGKILLRDGRTGDIFDNPITVGKPYLLKLIHLVDKKMHARSTGTYSLITQQPLKGKAKNGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDINGRNEVFNAIIKGHPIPKPGIPESFKVLLLELNALGLDITTNQLGKLENGEIDLYNVNLMSYIRSKLI 1749
            +EF++VD    DF+AVS  Q+++  +S I  LEHDDANRALMGSNMQRQAVPLLYP+KPIIGTG+E +IAADS+VV+IN   G+V+ VSADRII+L+N++ GSSK+YFLDKYRRSNQETIINQKPLIW G++VK GQI+ADGPGTD GEL+LGQNL VAYMPWEGYNYEDAIL+SERLV  DLFTSIHIEKY+LQ+ + +++I+E+T  IPN++ D + NLD NGIIKKG+FV  GDILVGKITP  E EELPESKLLRA+FNIKSPEP+DTSLR+P  ISGRVIEIQTASR KGDNL+ GV  W+CISIAQIKKIRIGDK+SGRHGNKGVISKIIP  DMPFLPDGT++DVILNPLGVPSRMNVGQIFECLLGFAGDYLN+RFK+VPFDEMY P+ASR+LIN+TL+KA+ +TNK WL+N SSPGK+LL DGRTG+IFDN + VGKPY+LKLIHLVDKKMHARSTG+YSL+TQQPL GK+K+GGQRFGEMEVWALEAFGVAYTLQELLT+KSDDINGR+EVFNAIIKGHPIP+PG+PESFKVLL ELNALGLDITT+Q+GKL+NGE+  Y VNL++ ++SKL+
Sbjct:  320 NEFIIVDSVSVDFIAVSPIQIIAIGASLIPFLEHDDANRALMGSNMQRQAVPLLYPKKPIIGTGIEHQIAADSQVVIINLLNGVVDSVSADRIIILDNKNIGSSKVYFLDKYRRSNQETIINQKPLIWTGEIVKPGQIIADGPGTDGGELALGQNLTVAYMPWEGYNYEDAILVSERLVQEDLFTSIHIEKYELQLVDDSASIEEITTSIPNIDTDAICNLDTNGIIKKGTFVNPGDILVGKITPIVEDEELPESKLLRAIFNIKSPEPEDTSLRVPNGISGRVIEIQTASREKGDNLASGVYEWVCISIAQIKKIRIGDKISGRHGNKGVISKIIPIHDMPFLPDGTVVDVILNPLGVPSRMNVGQIFECLLGFAGDYLNRRFKVVPFDEMYRPNASRILINKTLKKAAKKTNKPWLFNKSSPGKVLLTDGRTGEIFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFNAIIKGHPIPEPGVPESFKVLLRELNALGLDITTHQIGKLDNGEMASYKVNLLTLVKSKLL 902          
BLAST of mRNA_H-paniculata_contig34681.9248.1 vs. uniprot
Match: A0A0R6M4L3_UNDPI (DNA-directed RNA polymerase subunit beta n=27 Tax=Laminariales TaxID=2886 RepID=A0A0R6M4L3_UNDPI)

HSP 1 Score: 927 bits (2395), Expect = 0.000e+0
Identity = 450/583 (77.19%), Postives = 526/583 (90.22%), Query Frame = 1
Query:    1 DEFMLVDRSRGDFMAVSAFQVLSNRSSHIALLEHDDANRALMGSNMQRQAVPLLYPQKPIIGTGLESKIAADSRVVLINAFEGIVNFVSADRIIVLNNRSNGSSKIYFLDKYRRSNQETIINQKPLIWPGQLVKSGQILADGPGTDEGELSLGQNLRVAYMPWEGYNYEDAILISERLVSGDLFTSIHIEKYDLQISEANSTIDELTREIPNVELDGLMNLDINGIIKKGSFVKGGDILVGKITPTKESEELPESKLLRAVFNIKSPEPKDTSLRLPKSISGRVIEIQTASRAKGDNLSFGVEHWICISIAQIKKIRIGDKMSGRHGNKGVISKIIPREDMPFLPDGTLIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNQRFKIVPFDEMYEPDASRMLINQTLEKASFQTNKMWLYNSSSPGKILLRDGRTGDIFDNPITVGKPYLLKLIHLVDKKMHARSTGTYSLITQQPLKGKAKNGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDINGRNEVFNAIIKGHPIPKPGIPESFKVLLLELNALGLDITTNQLGKLENGEIDLYNVNLMSYIRSKLI 1749
            +EF++VD    DF+AVS  Q+++  +S I  LEHDDANRALMGSNMQRQAVPLLYP+KPIIGTG+E +IAADS+VV+IN   G+V+ VSADRII+L+N++ GSSK++FLDKYRRSNQETIINQKPLIW G++VK GQI+ADGPGTD GEL+LGQNL VAYMPWEGYNYEDAIL+SERLV  DLFTSIHIEKY+LQ+ + +++I+E+T  IPN++ D + NLD NGIIKKG+FV  GDILVGKITP  E EELPESKLLRA+FNIKSPEP+DTSLR+P  ISGRVIEIQTASR KGDNL+ GV  W+CISIAQIKKIRIGDK+SGRHGNKGVISKIIP  DMPFLPDGT++DVILNPLGVPSRMNVGQIFECLLGFAGDYLN+RFK+VPFDEMY P+ASR+LIN+TL+KA+ +TNK WL+N SSPGK+LL DGRTG+IFDN + VGKPY+LKLIHLVDKKMHARSTG+YSL+TQQPL GK+K+GGQRFGEMEVWALEAFGVAYTLQELLT+KSDDINGR+EVFNAIIKGHPIP+PG+PESFKVLL ELNALGLDITT+Q+GKL+NGE+  Y VNL++ ++SKL+
Sbjct:  545 NEFIIVDSVSVDFIAVSPIQIIAIGASLIPFLEHDDANRALMGSNMQRQAVPLLYPKKPIIGTGIEHQIAADSQVVIINLLNGVVDSVSADRIIILDNKNIGSSKVFFLDKYRRSNQETIINQKPLIWTGEIVKPGQIIADGPGTDGGELALGQNLTVAYMPWEGYNYEDAILVSERLVQEDLFTSIHIEKYELQLVDDSASIEEITTSIPNIDTDAICNLDTNGIIKKGTFVNPGDILVGKITPIVEDEELPESKLLRAIFNIKSPEPEDTSLRVPNGISGRVIEIQTASREKGDNLASGVYEWVCISIAQIKKIRIGDKISGRHGNKGVISKIIPIHDMPFLPDGTVVDVILNPLGVPSRMNVGQIFECLLGFAGDYLNRRFKVVPFDEMYRPNASRILINKTLKKAAKKTNKPWLFNKSSPGKVLLTDGRTGEIFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFNAIIKGHPIPEPGVPESFKVLLRELNALGLDITTHQIGKLDNGEMASYKVNLLTLVKSKLL 1127          
BLAST of mRNA_H-paniculata_contig34681.9248.1 vs. uniprot
Match: A0A8F0FB00_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB00_9PHAE)

HSP 1 Score: 914 bits (2362), Expect = 0.000e+0
Identity = 446/582 (76.63%), Postives = 522/582 (89.69%), Query Frame = 1
Query:    4 EFMLVDRSRGDFMAVSAFQVLSNRSSHIALLEHDDANRALMGSNMQRQAVPLLYPQKPIIGTGLESKIAADSRVVLINAFEGIVNFVSADRIIVLNNRSNGSSKIYFLDKYRRSNQETIINQKPLIWPGQLVKSGQILADGPGTDEGELSLGQNLRVAYMPWEGYNYEDAILISERLVSGDLFTSIHIEKYDLQISEANSTIDELTREIPNVELDGLMNLDINGIIKKGSFVKGGDILVGKITPTKESEELPESKLLRAVFNIKSPEPKDTSLRLPKSISGRVIEIQTASRAKGDNLSFGVEHWICISIAQIKKIRIGDKMSGRHGNKGVISKIIPREDMPFLPDGTLIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNQRFKIVPFDEMYEPDASRMLINQTLEKASFQTNKMWLYNSSSPGKILLRDGRTGDIFDNPITVGKPYLLKLIHLVDKKMHARSTGTYSLITQQPLKGKAKNGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDINGRNEVFNAIIKGHPIPKPGIPESFKVLLLELNALGLDITTNQLGKLENGEIDLYNVNLMSYIRSKLI 1749
            EF++VD +  +F+AVS  Q+++  +S I  LEHDDANRALMGSNMQRQAVPLLYPQKPIIGTG+E +IAADS+VVLIN  EGIV+ VSADRIIV +N++ GSSK+YFLDKYRRSNQETIINQK LIW G++VK GQI+ADGPGTD GEL+LGQNL VAYMPWEGYNYEDAIL+SE+LV  DL TSIHIE+Y+LQI + N  ++E+T +IP+ E++ L +LD NGI+KKGSFV  GDIL+GKITP KE++ELPESKLLRA+FNIKSPEP+DTSLR+P  ISGRVIEIQTASR KGD+L  GV+ WICISIAQIKKIRIGDK+SGRHGNKGVISKIIP EDMPFLPDGT++DVILNPLGVPSRMNVGQ+FECLLGFAGDYLN+RFK++PFDEMY P+ASR+LIN+ L +AS +TNK WL+NSSSPGK++L DGRTG++FDN + VGKPY+LKLIHLVDKKMHARSTG YSL+TQQPL GK+++GGQRFGEMEVWALEAFGVAYTLQELLTVKSDDI+GR+EVFNAII+G PIPKPG+PESFKVLL ELN+LGLDITT Q+GKL+NGEI  Y VNLM+ I+SKL+
Sbjct:  556 EFIIVDAASVNFIAVSPIQIIAAGASLIPFLEHDDANRALMGSNMQRQAVPLLYPQKPIIGTGIEHQIAADSQVVLINLLEGIVHSVSADRIIVFDNKNLGSSKVYFLDKYRRSNQETIINQKALIWAGEIVKPGQIIADGPGTDGGELALGQNLTVAYMPWEGYNYEDAILVSEKLVQEDLLTSIHIERYELQIIDNNIGLEEITAKIPHTEVEALAHLDENGIVKKGSFVNAGDILIGKITPIKEADELPESKLLRAIFNIKSPEPEDTSLRVPNGISGRVIEIQTASRDKGDSLPIGVDQWICISIAQIKKIRIGDKISGRHGNKGVISKIIPTEDMPFLPDGTIVDVILNPLGVPSRMNVGQLFECLLGFAGDYLNRRFKVLPFDEMYRPEASRILINKKLREASKKTNKSWLFNSSSPGKVMLTDGRTGELFDNSVMVGKPYILKLIHLVDKKMHARSTGPYSLVTQQPLGGKSRHGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDISGRHEVFNAIIRGRPIPKPGVPESFKVLLRELNSLGLDITTYQIGKLDNGEIAPYKVNLMTLIKSKLL 1137          
BLAST of mRNA_H-paniculata_contig34681.9248.1 vs. uniprot
Match: A0A6G6D7F3_ECTSI (DNA-directed RNA polymerase subunit beta n=9 Tax=Ectocarpales TaxID=2877 RepID=A0A6G6D7F3_ECTSI)

HSP 1 Score: 897 bits (2318), Expect = 2.230e-316
Identity = 430/583 (73.76%), Postives = 519/583 (89.02%), Query Frame = 1
Query:    1 DEFMLVDRSRGDFMAVSAFQVLSNRSSHIALLEHDDANRALMGSNMQRQAVPLLYPQKPIIGTGLESKIAADSRVVLINAFEGIVNFVSADRIIVLNNRSNGSSKIYFLDKYRRSNQETIINQKPLIWPGQLVKSGQILADGPGTDEGELSLGQNLRVAYMPWEGYNYEDAILISERLVSGDLFTSIHIEKYDLQISEANSTIDELTREIPNVELDGLMNLDINGIIKKGSFVKGGDILVGKITPTKESEELPESKLLRAVFNIKSPEPKDTSLRLPKSISGRVIEIQTASRAKGDNLSFGVEHWICISIAQIKKIRIGDKMSGRHGNKGVISKIIPREDMPFLPDGTLIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNQRFKIVPFDEMYEPDASRMLINQTLEKASFQTNKMWLYNSSSPGKILLRDGRTGDIFDNPITVGKPYLLKLIHLVDKKMHARSTGTYSLITQQPLKGKAKNGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDINGRNEVFNAIIKGHPIPKPGIPESFKVLLLELNALGLDITTNQLGKLENGEIDLYNVNLMSYIRSKLI 1749
            +EF+ VD    +F+AVS  Q+L+  +S I  LEHDDANRALMGSNMQRQAVPLLYP+KPIIGTG+E +IAADS+VVLIN  +GI++ V +DRI +++N+  GSSK+YFLDKYRRSNQETIINQKPLIW G++V+ GQI+ADGPGT+ GEL+LGQNL VAYMPW+GYN+EDAIL+S+RLV  DLFTSIHIEKY+L++ + + TI+E+T  IPN+E + ++NLD+NGIIKKG+FV GGDILVGKITP  E +ELPESKLLRA+FNI+SPEP+D+SLR+P  +SGRVIEIQTASR KGDNL  G+  W+CISIAQIKKIRIGDK+SGRHGNKGVISKIIP +DMPFLPDGT++DVILNPLGVPSRMNVGQIFECLLGFAGDYLN+RFK++PFDEMY+P+ASR+LIN+ L+KA+ +T+K WL+N  SPGK+LL DGRTGD+FDN + VGKPY+LKLIHLVDKKMHARSTG+YSL+TQQPL GK+K+GGQRFGEMEVWALEAFGVAYTLQELLT+KSDDINGR+EVF AIIKGH IP+PGIPESF VLL ELNALGLD+TT+++GKL NGEI  Y VNL++ ++ K++
Sbjct:  557 NEFITVDAINVNFLAVSPIQILAVGASLIPFLEHDDANRALMGSNMQRQAVPLLYPKKPIIGTGIEHQIAADSQVVLINLIDGIIDSVCSDRITIIDNKHLGSSKMYFLDKYRRSNQETIINQKPLIWNGEIVEPGQIIADGPGTEGGELALGQNLTVAYMPWDGYNFEDAILVSDRLVQDDLFTSIHIEKYELELMDESDTIEEITTSIPNIEEEEIINLDMNGIIKKGTFVNGGDILVGKITPILEEDELPESKLLRAIFNIESPEPEDSSLRVPNGVSGRVIEIQTASREKGDNLGSGIYEWVCISIAQIKKIRIGDKLSGRHGNKGVISKIIPTDDMPFLPDGTIVDVILNPLGVPSRMNVGQIFECLLGFAGDYLNRRFKVIPFDEMYKPNASRILINKALKKAAKETDKGWLFNKFSPGKVLLTDGRTGDVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGHNIPEPGIPESFNVLLRELNALGLDMTTHEIGKLNNGEITSYKVNLLTLMKPKVV 1139          
BLAST of mRNA_H-paniculata_contig34681.9248.1 vs. uniprot
Match: A0A8F0F9J7_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9J7_9PHAE)

HSP 1 Score: 897 bits (2319), Expect = 2.250e-316
Identity = 435/581 (74.87%), Postives = 516/581 (88.81%), Query Frame = 1
Query:    1 DEFMLVDRSRGDFMAVSAFQVLSNRSSHIALLEHDDANRALMGSNMQRQAVPLLYPQKPIIGTGLESKIAADSRVVLINAFEGIVNFVSADRIIVLNNRSNGSSKIYFLDKYRRSNQETIINQKPLIWPGQLVKSGQILADGPGTDEGELSLGQNLRVAYMPWEGYNYEDAILISERLVSGDLFTSIHIEKYDLQISEANSTIDELTREIPNVELDGLMNLDINGIIKKGSFVKGGDILVGKITPTKESEELPESKLLRAVFNIKSPEPKDTSLRLPKSISGRVIEIQTASRAKGDNLSFGVEHWICISIAQIKKIRIGDKMSGRHGNKGVISKIIPREDMPFLPDGTLIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNQRFKIVPFDEMYEPDASRMLINQTLEKASFQTNKMWLYNSSSPGKILLRDGRTGDIFDNPITVGKPYLLKLIHLVDKKMHARSTGTYSLITQQPLKGKAKNGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDINGRNEVFNAIIKGHPIPKPGIPESFKVLLLELNALGLDITTNQLGKLENGEIDLYNVNLMSYIRSK 1743
            +EF++ +    DF+A+S  Q+L+  +S I  LEH+DANRALMGSNMQRQAVPLLYP+KPIIGTGLE +IAADS++V+IN  +GIV+ VS++RII+++N++ G+SKIYFLDKYRRSNQET+INQKP+IW G++VK GQI+ADGPGTD GEL+LGQNL VAYMPWEGYNYEDAILISERLV  DLFTSIHIEKY+L++   + T++E+T +IPN+E D + NLD NGIIKKG+FV  GDILVG+ITP  E EELPESKLLRA+FNI+SPEP+DTSLR+P  ISGRVIEIQTASR KGD+L+ GV  W+CIS+AQIKKIRIGDK+SGRHGNKGVISKIIP +DMP+LPDG ++DVILNPLGVPSRMNVGQ+FECLLGFAGDYLN+RFK++PFDEMY PDASR+LIN+ L+KA+ +T K WL+N SSPGKILL DGRTG +FDN I VGK Y+LKLIHLVDKKMHARSTGTYSL+TQQPL GK+K+GGQRFGEMEVWALEAFGVAYTLQELLTVKSDDINGRNEVF+AII+G PIP+PGIPESFKVLL ELNALGLDITT+ LGKL+NGE+    VNL++ ++SK
Sbjct:  548 NEFIVTNADDVDFLAISPIQILAIGASLIPFLEHNDANRALMGSNMQRQAVPLLYPKKPIIGTGLEHQIAADSQIVVINLLDGIVDSVSSERIIIIDNKNFGNSKIYFLDKYRRSNQETVINQKPIIWTGEIVKPGQIIADGPGTDGGELALGQNLTVAYMPWEGYNYEDAILISERLVQEDLFTSIHIEKYELRLVYHSDTVEEITTQIPNIEADAIFNLDTNGIIKKGTFVNAGDILVGRITPIVEEEELPESKLLRAIFNIESPEPEDTSLRVPNGISGRVIEIQTASREKGDSLASGVYEWVCISLAQIKKIRIGDKLSGRHGNKGVISKIIPTQDMPYLPDGRIVDVILNPLGVPSRMNVGQLFECLLGFAGDYLNRRFKVIPFDEMYRPDASRILINKALKKAAKKTKKSWLFNKSSPGKILLTDGRTGQVFDNSILVGKSYILKLIHLVDKKMHARSTGTYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDINGRNEVFSAIIQGFPIPEPGIPESFKVLLRELNALGLDITTHHLGKLDNGEMVSSKVNLLALVKSK 1128          
BLAST of mRNA_H-paniculata_contig34681.9248.1 vs. uniprot
Match: A0A141BSD1_9PHAE (DNA-directed RNA polymerase subunit beta n=16 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSD1_9PHAE)

HSP 1 Score: 896 bits (2316), Expect = 2.260e-316
Identity = 435/583 (74.61%), Postives = 515/583 (88.34%), Query Frame = 1
Query:    1 DEFMLVDRSRGDFMAVSAFQVLSNRSSHIALLEHDDANRALMGSNMQRQAVPLLYPQKPIIGTGLESKIAADSRVVLINAFEGIVNFVSADRIIVLNNRSNGSSKIYFLDKYRRSNQETIINQKPLIWPGQLVKSGQILADGPGTDEGELSLGQNLRVAYMPWEGYNYEDAILISERLVSGDLFTSIHIEKYDLQISEANSTIDELTREIPNVELDGLMNLDINGIIKKGSFVKGGDILVGKITPTKESEELPESKLLRAVFNIKSPEPKDTSLRLPKSISGRVIEIQTASRAKGDNLSFGVEHWICISIAQIKKIRIGDKMSGRHGNKGVISKIIPREDMPFLPDGTLIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNQRFKIVPFDEMYEPDASRMLINQTLEKASFQTNKMWLYNSSSPGKILLRDGRTGDIFDNPITVGKPYLLKLIHLVDKKMHARSTGTYSLITQQPLKGKAKNGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDINGRNEVFNAIIKGHPIPKPGIPESFKVLLLELNALGLDITTNQLGKLENGEIDLYNVNLMSYIRSKLI 1749
            +EF++V+ +  DF+AVS  Q+++  +S I  LEH+DANRALMGSNMQRQAVPLLYP+KPIIGTG+E +IA DS VV+IN   GIV+ VS+D+II+L+  + GSSKIYFLDKYRRSNQETIINQKPL+WPG++VK GQ +ADGPGTD GEL+LGQNL VAYMPWEGYNYEDAIL+SERL+  DLFTSIHIE+Y+LQ+ + +  ++E+T+ +PN+E + + NLDINGIIKKG+FVKGGDILVGKITP  E EELPESKLLRA+FNIKSPEP+DTSLR+PK ISGRVIE+QTASR KGDNL  GV  WI I IAQ KKI+IGDK+SGRHGNKGVISK+IP  DMPFLPDGT IDVILNPLGVPSRMNVGQIFECLLGFAGDYLN RFK++PFDEMY  +ASR+ IN+ L+ A+++TNK W++N S PGK++L+DGRTG+IF+NPI VGKPY+LKLIHLVDKKMHARSTG+YSLITQQPL GK+K+GGQRFGEMEVWALEAFGVAYTLQELLT+KSDDINGR+EVFNAII G PIP+PGIPESFKVLL ELNALGLDITT+QL K E+GEI  +NVNL++ ++SKL+
Sbjct:  541 NEFIIVEGTNVDFIAVSPIQIIAAGASLIPFLEHNDANRALMGSNMQRQAVPLLYPKKPIIGTGIEHQIAIDSLVVIINLLNGIVDSVSSDQIIILDIENIGSSKIYFLDKYRRSNQETIINQKPLVWPGEIVKPGQTIADGPGTDGGELALGQNLMVAYMPWEGYNYEDAILVSERLLHHDLFTSIHIERYELQLMDNSMKVEEITKSVPNIETEAISNLDINGIIKKGTFVKGGDILVGKITPVMEEEELPESKLLRAIFNIKSPEPEDTSLRVPKGISGRVIEVQTASREKGDNLESGVYEWIGILIAQTKKIKIGDKLSGRHGNKGVISKLIPTYDMPFLPDGTTIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNHRFKVLPFDEMYRKNASRIFINKALKSAAYKTNKSWIFNKSFPGKVILKDGRTGEIFNNPILVGKPYILKLIHLVDKKMHARSTGSYSLITQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFNAIINGRPIPEPGIPESFKVLLRELNALGLDITTHQLRKSESGEIKSFNVNLLTLLKSKLL 1123          
BLAST of mRNA_H-paniculata_contig34681.9248.1 vs. uniprot
Match: A0A2R4QPV0_9PHAE (DNA-directed RNA polymerase subunit beta n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPV0_9PHAE)

HSP 1 Score: 894 bits (2311), Expect = 1.580e-315
Identity = 434/583 (74.44%), Postives = 515/583 (88.34%), Query Frame = 1
Query:    1 DEFMLVDRSRGDFMAVSAFQVLSNRSSHIALLEHDDANRALMGSNMQRQAVPLLYPQKPIIGTGLESKIAADSRVVLINAFEGIVNFVSADRIIVLNNRSNGSSKIYFLDKYRRSNQETIINQKPLIWPGQLVKSGQILADGPGTDEGELSLGQNLRVAYMPWEGYNYEDAILISERLVSGDLFTSIHIEKYDLQISEANSTIDELTREIPNVELDGLMNLDINGIIKKGSFVKGGDILVGKITPTKESEELPESKLLRAVFNIKSPEPKDTSLRLPKSISGRVIEIQTASRAKGDNLSFGVEHWICISIAQIKKIRIGDKMSGRHGNKGVISKIIPREDMPFLPDGTLIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNQRFKIVPFDEMYEPDASRMLINQTLEKASFQTNKMWLYNSSSPGKILLRDGRTGDIFDNPITVGKPYLLKLIHLVDKKMHARSTGTYSLITQQPLKGKAKNGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDINGRNEVFNAIIKGHPIPKPGIPESFKVLLLELNALGLDITTNQLGKLENGEIDLYNVNLMSYIRSKLI 1749
            +EF++V+ +  DF+AVS  Q+++  +S I  LEHDDANRALMGSNMQRQAVPLLYP+KPIIGTG+E +IA+DS+VV+IN   G VN+ S+D+II+L+N + G+SK+YFLDKYRRSNQETIINQKPLIW G++VK GQI+ADGPGTD GEL+LGQNL VAYMPWEGYNYEDAIL+SE+L+  DLFTSIHIE+Y+LQ+ + N+ I+E+T  IP++E   + NLD NGIIKKG+FVK GDILVGKITP  E EELPESKLLRA+FNIKSPEP+DTSLR+P  +SGRVIE+QTASR KGDNL  GV  W+CISIAQ KKI+IGDK+SGRHGNKGVISK+IP  DMPFLPDGT+IDVILNPLGVPSRMNVGQIFECLLGFAGDYLNQRFK++PFDEMY  +ASR+L+N+TL+KA+++TNK WL+N SSPGKI L DGRTG++F+NP+ VGKPY+LKLIHLVDKKMHARSTG+YSLITQQPL GK+K+GGQRFGEMEVWALEAFGVAYTLQELLT+KSDDINGR+EVFNAII G PIP+PG+PESFKVLL ELNALGLDITT+QL K  + EI    VNL++ I+SKL+
Sbjct:  541 NEFIVVNSTTVDFIAVSPIQIIAAGASLIPFLEHDDANRALMGSNMQRQAVPLLYPKKPIIGTGIEHQIASDSQVVIINLLNGTVNYASSDQIIILDNENVGNSKVYFLDKYRRSNQETIINQKPLIWAGEIVKPGQIIADGPGTDGGELALGQNLLVAYMPWEGYNYEDAILVSEKLIHNDLFTSIHIERYELQLMDNNTNIEEITITIPSIEAKAICNLDKNGIIKKGTFVKSGDILVGKITPIVEEEELPESKLLRAIFNIKSPEPEDTSLRVPNGVSGRVIEVQTASRDKGDNLESGVYEWVCISIAQTKKIKIGDKLSGRHGNKGVISKLIPTCDMPFLPDGTIIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNQRFKVLPFDEMYRSNASRILVNKTLKKAAYKTNKTWLFNKSSPGKIPLIDGRTGELFNNPVLVGKPYILKLIHLVDKKMHARSTGSYSLITQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTIKSDDINGRHEVFNAIINGRPIPEPGVPESFKVLLRELNALGLDITTHQLRKSNSEEIKSSKVNLLTLIKSKLL 1123          
BLAST of mRNA_H-paniculata_contig34681.9248.1 vs. uniprot
Match: A0A1I9LV95_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LV95_9PHAE)

HSP 1 Score: 879 bits (2272), Expect = 1.920e-309
Identity = 430/583 (73.76%), Postives = 511/583 (87.65%), Query Frame = 1
Query:    1 DEFMLVDRSRGDFMAVSAFQVLSNRSSHIALLEHDDANRALMGSNMQRQAVPLLYPQKPIIGTGLESKIAADSRVVLINAFEGIVNFVSADRIIVLNNRSNGSSKIYFLDKYRRSNQETIINQKPLIWPGQLVKSGQILADGPGTDEGELSLGQNLRVAYMPWEGYNYEDAILISERLVSGDLFTSIHIEKYDLQISEANSTIDELTREIPNVELDGLMNLDINGIIKKGSFVKGGDILVGKITPTKESEELPESKLLRAVFNIKSPEPKDTSLRLPKSISGRVIEIQTASRAKGDNLSFGVEHWICISIAQIKKIRIGDKMSGRHGNKGVISKIIPREDMPFLPDGTLIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNQRFKIVPFDEMYEPDASRMLINQTLEKASFQTNKMWLYNSSSPGKILLRDGRTGDIFDNPITVGKPYLLKLIHLVDKKMHARSTGTYSLITQQPLKGKAKNGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDINGRNEVFNAIIKGHPIPKPGIPESFKVLLLELNALGLDITTNQLGKLENGEIDLYNVNLMSYIRSKLI 1749
            +EF+ V+    +F+AVS  Q+L+  +S I  LEHDDANRALMGSNMQRQAVPLLYP+KPIIGTG+E +IAADS+VVLIN  +GI++ V ++RI +++N++ GSSKIYFLDKYRRSNQETIINQKPLIW G++V+ GQI+ADGPGT+ GEL+LGQNL VAYMPW+GYN+EDAIL+S+RLV  DLFTSIHIEKYDLQ+ + + TIDE+T+ IPN+E + + NLDINGIIKKG+FV GGDILVGKITP  E +ELPES+LLRA+FNI+SPEP+D+SLR+P  ISGRVIEIQTASR KGDNL  GV  W+CISIAQIKKIRIGDK+SGRHGNKGVISKIIP  DMPFLPDGT+IDVILNPLGVPSRMNVGQIFECLLGFAGDYLN+RF+++PFDEMY P+ASR+LIN+ L+KA+ QTNK WL+N  SPGKILL DGR G+IFDN + VGKPY+LKLIHLVDKKMHARSTG+YSL+TQQPL GK+K+GGQRFGEMEVWALEAFGVAYTLQELLT+KSDDINGR+EVF AIIKG  IP+P +PESF VLL ELNALGLD+TT+++  L+N EI  Y VNL + I+  ++
Sbjct:  554 NEFITVEDINVNFLAVSPIQILAVGASLIPFLEHDDANRALMGSNMQRQAVPLLYPKKPIIGTGIEHQIAADSQVVLINLLDGIIDSVFSNRITIVDNQNLGSSKIYFLDKYRRSNQETIINQKPLIWNGEIVEPGQIIADGPGTEGGELALGQNLTVAYMPWDGYNFEDAILVSDRLVQDDLFTSIHIEKYDLQVLDDSDTIDEITKAIPNIEEEEIRNLDINGIIKKGTFVNGGDILVGKITPVLEEDELPESRLLRAIFNIESPEPEDSSLRVPNGISGRVIEIQTASREKGDNLGSGVYEWVCISIAQIKKIRIGDKLSGRHGNKGVISKIIPTYDMPFLPDGTIIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNRRFRVLPFDEMYTPNASRILINKALKKAAQQTNKSWLFNKFSPGKILLTDGRNGNIFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWALEAFGVAYTLQELLTLKSDDINGRHEVFTAIIKGQNIPEPCVPESFNVLLRELNALGLDMTTHEISNLDNLEITSYKVNLFNLIKPNVV 1136          
BLAST of mRNA_H-paniculata_contig34681.9248.1 vs. uniprot
Match: A0A2I4Q2B1_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2B1_9PHAE)

HSP 1 Score: 835 bits (2158), Expect = 2.250e-292
Identity = 410/578 (70.93%), Postives = 488/578 (84.43%), Query Frame = 1
Query:    1 DEFMLVDRSRGDFMAVSAFQVLSNRSSHIALLEHDDANRALMGSNMQRQAVPLLYPQKPIIGTGLESKIAADSRVVLINAFEGIVNFVSADRIIVLNNRSNGSSKIYFLDKYRRSNQETIINQKPLIWPGQLVKSGQILADGPGTDEGELSLGQNLRVAYMPWEGYNYEDAILISERLVSGDLFTSIHIEKYDLQISEANSTIDELTREIPNVELDGLMNLDINGIIKKGSFVKGGDILVGKITPTKESEELPESKLLRAVFNIKSPEPKDTSLRLPKSISGRVIEIQTASRAKGDNLSFGVEHWICISIAQIKKIRIGDKMSGRHGNKGVISKIIPREDMPFLPDGTLIDVILNPLGVPSRMNVGQIFECLLGFAGDYLNQRFKIVPFDEMYEPDASRMLINQTLEKASFQTNKMWLYNSSSPGKILLRDGRTGDIFDNPITVGKPYLLKLIHLVDKKMHARSTGTYSLITQQPLKGKAKNGGQRFGEMEVWALEAFGVAYTLQELLTVKSDDINGRNEVFNAIIKGHPIPKPGIPESFKVLLLELNALGLDITTNQLGKLENGEIDLYNVNLMSYI 1734
            +EF+L D    +F+A+S  Q+L+  +S I  LEH+DANRALMGSNMQRQA+PLL  QKPI+GTG+E +IA DS V ++N  EG+V  VSADRIIVL N  N  +K+YFLDK+RRSNQETIINQ+P++WPGQLVK+GQI+ADGP T+EGEL+LGQNLRVAY+PWEGYNYEDAI++SERL+  DLF+S+HIEKY+L + E N  ++ELTR+IP V+ + L  LD NG++KKG+FV+GGDILVGKITP   SEELPESKLLRAVF I+SPEP DTSL++P  +SGRVI+I  ASR  GD L  GV     ISIAQIKKI+IGDK+SGRHGNKGVISKI+P ED+PFLPDG  IDV+LNPLGVPSRMNVGQIFECLLGFAGDYLNQR+K++PFDEMY  +ASR+L+N+TL KAS  T   WL+N SSPGKILL DGRTG+ FDNPI VGKPYLLKL+HLVDKKMHARSTG YSL+TQQPLKGK+ NGGQRFGEMEVWAL+A+GVAYTLQELLT+KSDD+ GRNEV+ AI+KGHPIPKP IPESF+VLL ELN+LGLD+T  QL KL N E+   ++NLMS +
Sbjct:  547 NEFILTDSFNVNFVAISPIQILAAGASLIPFLEHNDANRALMGSNMQRQALPLLQAQKPIVGTGIECQIALDSLVSVLNLEEGVVESVSADRIIVLTNNKNKPTKVYFLDKFRRSNQETIINQQPIVWPGQLVKAGQIIADGPATEEGELALGQNLRVAYLPWEGYNYEDAIIVSERLIHDDLFSSLHIEKYELYLMENNQGLEELTRDIPRVDEEILSKLDKNGLVKKGTFVRGGDILVGKITPIIASEELPESKLLRAVFEIESPEPDDTSLKVPNEVSGRVIDISIASRENGDTLETGVYQIFRISIAQIKKIKIGDKISGRHGNKGVISKIVPIEDLPFLPDGNTIDVLLNPLGVPSRMNVGQIFECLLGFAGDYLNQRYKVLPFDEMYCSEASRILVNKTLCKASKSTKNCWLFNPSSPGKILLTDGRTGENFDNPILVGKPYLLKLMHLVDKKMHARSTGPYSLVTQQPLKGKSNNGGQRFGEMEVWALQAYGVAYTLQELLTLKSDDMKGRNEVYKAIVKGHPIPKPRIPESFRVLLRELNSLGLDLTAYQLEKLNNSELGNVDINLMSLL 1124          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34681.9248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F779_9PHAE0.000e+089.37DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A140G1K0_UNDPI0.000e+077.36DNA-directed RNA polymerase subunit beta n=1 Tax=U... [more]
A0A0R6M4L3_UNDPI0.000e+077.19DNA-directed RNA polymerase subunit beta n=27 Tax=... [more]
A0A8F0FB00_9PHAE0.000e+076.63DNA-directed RNA polymerase subunit beta n=1 Tax=D... [more]
A0A6G6D7F3_ECTSI2.230e-31673.76DNA-directed RNA polymerase subunit beta n=9 Tax=E... [more]
A0A8F0F9J7_9PHAE2.250e-31674.87DNA-directed RNA polymerase subunit beta n=1 Tax=C... [more]
A0A141BSD1_9PHAE2.260e-31674.61DNA-directed RNA polymerase subunit beta n=16 Tax=... [more]
A0A2R4QPV0_9PHAE1.580e-31574.44DNA-directed RNA polymerase subunit beta n=3 Tax=F... [more]
A0A1I9LV95_9PHAE1.920e-30973.76DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A2I4Q2B1_9PHAE2.250e-29270.93DNA-directed RNA polymerase subunit beta n=1 Tax=D... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34681contigH-paniculata_contig34681:645..2396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score894.8
Seed ortholog evalue2.1e-257
Seed eggNOG ortholog2880.D1J787
Preferred namerpoB
KEGG rclassRC02795
KEGG koko:K03043,ko:K03046
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00183
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0030880,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0061695,GO:1902494,GO:1990234
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0085@1,KOG0214@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Exons1
Model size1752
Cds size1743
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930070.080093-CDS-H-paniculata_contig34681:644..23871622930070.080093-CDS-H-paniculata_contig34681:644..2387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34681 645..2387 -
1691481134.7007515-CDS-H-paniculata_contig34681:644..23871691481134.7007515-CDS-H-paniculata_contig34681:644..2387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34681 645..2387 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930070.0973725-UTR-H-paniculata_contig34681:2387..23961622930070.0973725-UTR-H-paniculata_contig34681:2387..2396Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34681 2388..2396 -
1691481134.71531-UTR-H-paniculata_contig34681:2387..23961691481134.71531-UTR-H-paniculata_contig34681:2387..2396Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34681 2388..2396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34681.9248.1prot_H-paniculata_contig34681.9248.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34681 645..2387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34681.9248.1

>prot_H-paniculata_contig34681.9248.1 ID=prot_H-paniculata_contig34681.9248.1|Name=mRNA_H-paniculata_contig34681.9248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=581bp
MLVDRSRGDFMAVSAFQVLSNRSSHIALLEHDDANRALMGSNMQRQAVPL
LYPQKPIIGTGLESKIAADSRVVLINAFEGIVNFVSADRIIVLNNRSNGS
SKIYFLDKYRRSNQETIINQKPLIWPGQLVKSGQILADGPGTDEGELSLG
QNLRVAYMPWEGYNYEDAILISERLVSGDLFTSIHIEKYDLQISEANSTI
DELTREIPNVELDGLMNLDINGIIKKGSFVKGGDILVGKITPTKESEELP
ESKLLRAVFNIKSPEPKDTSLRLPKSISGRVIEIQTASRAKGDNLSFGVE
HWICISIAQIKKIRIGDKMSGRHGNKGVISKIIPREDMPFLPDGTLIDVI
LNPLGVPSRMNVGQIFECLLGFAGDYLNQRFKIVPFDEMYEPDASRMLIN
QTLEKASFQTNKMWLYNSSSPGKILLRDGRTGDIFDNPITVGKPYLLKLI
HLVDKKMHARSTGTYSLITQQPLKGKAKNGGQRFGEMEVWALEAFGVAYT
LQELLTVKSDDINGRNEVFNAIIKGHPIPKPGIPESFKVLLLELNALGLD
ITTNQLGKLENGEIDLYNVNLMSYIRSKLI*
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mRNA from alignment at H-paniculata_contig34681:645..2396-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34681.9248.1 ID=mRNA_H-paniculata_contig34681.9248.1|Name=mRNA_H-paniculata_contig34681.9248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1752bp|location=Sequence derived from alignment at H-paniculata_contig34681:645..2396- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGAATTTATGTTAGTTGATAGATCTAGGGGAGATTTTATGGCGGTTTC AGCATTTCAGGTTCTTTCCAATCGATCCTCACACATTGCGCTTTTAGAAC ATGATGATGCTAATCGTGCTTTAATGGGTTCCAATATGCAGAGACAAGCC GTTCCTTTATTATATCCACAAAAACCTATTATTGGAACTGGATTAGAATC TAAAATTGCGGCAGATTCTAGAGTTGTTCTTATAAATGCATTTGAAGGAA TTGTTAATTTTGTTTCTGCTGATCGAATTATAGTCTTAAATAATAGAAGT AATGGAAGTTCAAAAATTTATTTTTTAGATAAATATCGTCGTTCTAATCA AGAAACAATCATTAATCAAAAACCATTAATTTGGCCTGGCCAACTAGTTA AATCAGGCCAAATTCTTGCAGATGGGCCAGGTACAGATGAAGGAGAACTT TCACTAGGACAAAATTTAAGAGTTGCTTATATGCCCTGGGAAGGCTATAA TTATGAAGATGCAATTTTAATTAGTGAAAGATTAGTTTCTGGAGATCTTT TTACTTCAATTCATATAGAAAAATATGATCTTCAAATAAGCGAAGCGAAT TCAACAATAGATGAATTAACAAGGGAAATACCAAATGTTGAACTAGATGG TTTAATGAATTTAGATATTAATGGGATAATAAAAAAAGGAAGTTTTGTTA AAGGAGGTGACATATTAGTTGGAAAAATTACTCCTACAAAAGAGTCTGAA GAATTACCTGAAAGTAAATTATTACGTGCTGTTTTTAATATTAAATCGCC AGAGCCTAAGGACACCTCATTAAGATTACCAAAATCAATTTCAGGGCGTG TTATTGAAATTCAAACTGCTTCAAGAGCAAAAGGAGATAATTTATCGTTT GGTGTAGAGCATTGGATTTGTATTTCTATTGCGCAAATTAAAAAAATAAG AATAGGTGATAAGATGTCTGGAAGACATGGTAATAAAGGAGTTATCTCAA AAATAATACCAAGAGAAGATATGCCATTTTTACCTGATGGAACATTAATT GACGTTATCTTAAATCCTCTAGGAGTTCCATCAAGAATGAATGTAGGTCA AATTTTTGAGTGTTTATTGGGTTTTGCTGGTGACTATTTAAATCAAAGGT TTAAAATTGTTCCTTTTGATGAAATGTATGAACCAGATGCTTCGCGAATG TTAATTAATCAAACATTAGAAAAAGCTTCCTTTCAAACTAATAAGATGTG GCTCTATAATTCCTCTTCCCCCGGCAAAATTTTATTAAGAGATGGTAGAA CTGGAGATATCTTTGATAATCCGATTACAGTTGGTAAACCTTATCTTTTA AAACTTATTCATCTAGTAGATAAAAAAATGCACGCTCGTTCAACAGGTAC TTATTCATTAATAACACAACAACCTTTAAAAGGAAAAGCTAAAAATGGTG GTCAAAGATTTGGAGAAATGGAAGTTTGGGCTTTAGAAGCTTTTGGAGTT GCATATACGCTACAGGAATTGTTAACTGTTAAGTCCGATGATATAAATGG TAGAAATGAAGTGTTTAATGCTATTATTAAAGGTCACCCTATACCAAAAC CTGGGATTCCAGAATCTTTTAAAGTTTTGCTTCTTGAATTAAATGCATTA GGATTAGATATTACGACTAATCAACTTGGAAAATTAGAAAATGGAGAAAT AGATTTATATAATGTGAATTTAATGTCTTATATTAGATCCAAACTAATTT AA
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Coding sequence (CDS) from alignment at H-paniculata_contig34681:645..2396-

>mRNA_H-paniculata_contig34681.9248.1 ID=mRNA_H-paniculata_contig34681.9248.1|Name=mRNA_H-paniculata_contig34681.9248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3486bp|location=Sequence derived from alignment at H-paniculata_contig34681:645..2396- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTAGTTGATAGATCTAGGGGAGATTTTATGGCGGTTTCAGCATTTCA
GGTTCTTTCCAATCGATCCTCACACATTGCGCTTTTAGAACATGATGATG
CTAATCGTGCTTTAATGGGTTCCAATATGCAGAGACAAGCCGTTCCTTTA
TTATATCCACAAAAACCTATTATTGGAACTGGATTAGAATCTAAAATTGC
GGCAGATTCTAGAGTTGTTCTTATAAATGCATTTGAAGGAATTGTTAATT
TTGTTTCTGCTGATCGAATTATAGTCTTAAATAATAGAAGTAATGGAAGT
TCAAAAATTTATTTTTTAGATAAATATCGTCGTTCTAATCAAGAAACAAT
CATTAATCAAAAACCATTAATTTGGCCTGGCCAACTAGTTAAATCAGGCC
AAATTCTTGCAGATGGGCCAGGTACAGATGAAGGAGAACTTTCACTAGGA
CAAAATTTAAGAGTTGCTTATATGCCCTGGGAAGGCTATAATTATGAAGA
TGCAATTTTAATTAGTGAAAGATTAGTTTCTGGAGATCTTTTTACTTCAA
TTCATATAGAAAAATATGATCTTCAAATAAGCGAAGCGAATTCAACAATA
GATGAATTAACAAGGGAAATACCAAATGTTGAACTAGATGGTTTAATGAA
TTTAGATATTAATGGGATAATAAAAAAAGGAAGTTTTGTTAAAGGAGGTG
ACATATTAGTTGGAAAAATTACTCCTACAAAAGAGTCTGAAGAATTACCT
GAAAGTAAATTATTACGTGCTGTTTTTAATATTAAATCGCCAGAGCCTAA
GGACACCTCATTAAGATTACCAAAATCAATTTCAGGGCGTGTTATTGAAA
TTCAAACTGCTTCAAGAGCAAAAGGAGATAATTTATCGTTTGGTGTAGAG
CATTGGATTTGTATTTCTATTGCGCAAATTAAAAAAATAAGAATAGGTGA
TAAGATGTCTGGAAGACATGGTAATAAAGGAGTTATCTCAAAAATAATAC
CAAGAGAAGATATGCCATTTTTACCTGATGGAACATTAATTGACGTTATC
TTAAATCCTCTAGGAGTTCCATCAAGAATGAATGTAGGTCAAATTTTTGA
GTGTTTATTGGGTTTTGCTGGTGACTATTTAAATCAAAGGTTTAAAATTG
TTCCTTTTGATGAAATGTATGAACCAGATGCTTCGCGAATGTTAATTAAT
CAAACATTAGAAAAAGCTTCCTTTCAAACTAATAAGATGTGGCTCTATAA
TTCCTCTTCCCCCGGCAAAATTTTATTAAGAGATGGTAGAACTGGAGATA
TCTTTGATAATCCGATTACAGTTGGTAAACCTTATCTTTTAAAACTTATT
CATCTAGTAGATAAAAAAATGCACGCTCGTTCAACAGGTACTTATTCATT
AATAACACAACAACCTTTAAAAGGAAAAGCTAAAAATGGTGGTCAAAGAT
TTGGAGAAATGGAAGTTTGGGCTTTAGAAGCTTTTGGAGTTGCATATACG
CTACAGGAATTGTTAACTGTTAAGTCCGATGATATAAATGGTAGAAATGA
AGTGTTTAATGCTATTATTAAAGGTCACCCTATACCAAAACCTGGGATTC
CAGAATCTTTTAAAGTTTTGCTTCTTGAATTAAATGCATTAGGATTAGAT
ATTACGACTAATCAACTTGGAAAATTAGAAAATGGAGAAATAGATTTATA
TAATGTGAATTTAATGTCTTATATTAGATCCAAACTAATTTAAATGTTAG
TTGATAGATCTAGGGGAGATTTTATGGCGGTTTCAGCATTTCAGGTTCTT
TCCAATCGATCCTCACACATTGCGCTTTTAGAACATGATGATGCTAATCG
TGCTTTAATGGGTTCCAATATGCAGAGACAAGCCGTTCCTTTATTATATC
CACAAAAACCTATTATTGGAACTGGATTAGAATCTAAAATTGCGGCAGAT
TCTAGAGTTGTTCTTATAAATGCATTTGAAGGAATTGTTAATTTTGTTTC
TGCTGATCGAATTATAGTCTTAAATAATAGAAGTAATGGAAGTTCAAAAA
TTTATTTTTTAGATAAATATCGTCGTTCTAATCAAGAAACAATCATTAAT
CAAAAACCATTAATTTGGCCTGGCCAACTAGTTAAATCAGGCCAAATTCT
TGCAGATGGGCCAGGTACAGATGAAGGAGAACTTTCACTAGGACAAAATT
TAAGAGTTGCTTATATGCCCTGGGAAGGCTATAATTATGAAGATGCAATT
TTAATTAGTGAAAGATTAGTTTCTGGAGATCTTTTTACTTCAATTCATAT
AGAAAAATATGATCTTCAAATAAGCGAAGCGAATTCAACAATAGATGAAT
TAACAAGGGAAATACCAAATGTTGAACTAGATGGTTTAATGAATTTAGAT
ATTAATGGGATAATAAAAAAAGGAAGTTTTGTTAAAGGAGGTGACATATT
AGTTGGAAAAATTACTCCTACAAAAGAGTCTGAAGAATTACCTGAAAGTA
AATTATTACGTGCTGTTTTTAATATTAAATCGCCAGAGCCTAAGGACACC
TCATTAAGATTACCAAAATCAATTTCAGGGCGTGTTATTGAAATTCAAAC
TGCTTCAAGAGCAAAAGGAGATAATTTATCGTTTGGTGTAGAGCATTGGA
TTTGTATTTCTATTGCGCAAATTAAAAAAATAAGAATAGGTGATAAGATG
TCTGGAAGACATGGTAATAAAGGAGTTATCTCAAAAATAATACCAAGAGA
AGATATGCCATTTTTACCTGATGGAACATTAATTGACGTTATCTTAAATC
CTCTAGGAGTTCCATCAAGAATGAATGTAGGTCAAATTTTTGAGTGTTTA
TTGGGTTTTGCTGGTGACTATTTAAATCAAAGGTTTAAAATTGTTCCTTT
TGATGAAATGTATGAACCAGATGCTTCGCGAATGTTAATTAATCAAACAT
TAGAAAAAGCTTCCTTTCAAACTAATAAGATGTGGCTCTATAATTCCTCT
TCCCCCGGCAAAATTTTATTAAGAGATGGTAGAACTGGAGATATCTTTGA
TAATCCGATTACAGTTGGTAAACCTTATCTTTTAAAACTTATTCATCTAG
TAGATAAAAAAATGCACGCTCGTTCAACAGGTACTTATTCATTAATAACA
CAACAACCTTTAAAAGGAAAAGCTAAAAATGGTGGTCAAAGATTTGGAGA
AATGGAAGTTTGGGCTTTAGAAGCTTTTGGAGTTGCATATACGCTACAGG
AATTGTTAACTGTTAAGTCCGATGATATAAATGGTAGAAATGAAGTGTTT
AATGCTATTATTAAAGGTCACCCTATACCAAAACCTGGGATTCCAGAATC
TTTTAAAGTTTTGCTTCTTGAATTAAATGCATTAGGATTAGATATTACGA
CTAATCAACTTGGAAAATTAGAAAATGGAGAAATAGATTTATATAATGTG
AATTTAATGTCTTATATTAGATCCAAACTAATTTAA
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