mRNA_H-paniculata_contig34668.9245.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34668.9245.1
Unique NamemRNA_H-paniculata_contig34668.9245.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34668.9245.1 vs. uniprot
Match: A0A6H5JCH2_9PHAE (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JCH2_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.180e-34
Identity = 61/75 (81.33%), Postives = 66/75 (88.00%), Query Frame = 1
Query:    1 THTRMPYFSYLSMLHLLETLGWWTGGSEVRKVHFAEEYNEMMHLRIMESLGGDTRWSDRFFARHAALLYYAALIL 225
            T  RMPYFSYLSML L ETLGWW+G +EVRKVHFAEEYNEM HLRIMESLGGDTRWSDRF ARHAA++Y+  LIL
Sbjct:  429 TVARMPYFSYLSMLFLYETLGWWSGAAEVRKVHFAEEYNEMQHLRIMESLGGDTRWSDRFLARHAAIIYFFVLIL 503          
BLAST of mRNA_H-paniculata_contig34668.9245.1 vs. uniprot
Match: A0A7S3XP24_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XP24_HETAK)

HSP 1 Score: 127 bits (319), Expect = 2.190e-33
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 1
Query:    1 THTRMPYFSYLSMLHLLETLGWWTGGSEVRKVHFAEEYNEMMHLRIMESLGGDTRWSDRFFARHAALLYYAALILV 228
            T  RMPYFSYLSMLHL ETLGWWT G EVRKVHFAEE+NE+ HL+IM+SLGGD  W+DRFFARHAA+LYY  L L+
Sbjct:  149 TIARMPYFSYLSMLHLYETLGWWTVGEEVRKVHFAEEWNELRHLKIMQSLGGDAAWADRFFARHAAILYYWLLNLM 224          
BLAST of mRNA_H-paniculata_contig34668.9245.1 vs. uniprot
Match: A0A7S3XP26_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XP26_HETAK)

HSP 1 Score: 127 bits (319), Expect = 3.050e-33
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 1
Query:    1 THTRMPYFSYLSMLHLLETLGWWTGGSEVRKVHFAEEYNEMMHLRIMESLGGDTRWSDRFFARHAALLYYAALILV 228
            T  RMPYFSYLSMLHL ETLGWWT G EVRKVHFAEE+NE+ HL+IM+SLGGD  W+DRFFARHAA+LYY  L L+
Sbjct:  149 TIARMPYFSYLSMLHLYETLGWWTVGEEVRKVHFAEEWNELRHLKIMQSLGGDAAWADRFFARHAAILYYWLLNLM 224          
BLAST of mRNA_H-paniculata_contig34668.9245.1 vs. uniprot
Match: A0A835YR99_9STRA (Alternative oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR99_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.080e-31
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 1
Query:   10 RMPYFSYLSMLHLLETLGWWTGGSEVRKVHFAEEYNEMMHLRIMESLGGDTRWSDRFFARHAALLYYAAL 219
            RMPYFSYLSMLHL ETLGWW+ G+EVR+VHF+EE+NEM HL+IME+LGGD RWSDRF ARHAA++YY AL
Sbjct:  364 RMPYFSYLSMLHLYETLGWWSVGTEVRRVHFSEEWNEMNHLKIMEALGGDMRWSDRFLARHAAIVYYWAL 433          
BLAST of mRNA_H-paniculata_contig34668.9245.1 vs. uniprot
Match: A0A2K1IAY0_PHYPA (Ubiquinol oxidase n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IAY0_PHYPA)

HSP 1 Score: 123 bits (309), Expect = 1.310e-31
Identity = 57/76 (75.00%), Postives = 62/76 (81.58%), Query Frame = 1
Query:    1 THTRMPYFSYLSMLHLLETLGWWTGGSEVRKVHFAEEYNEMMHLRIMESLGGDTRWSDRFFARHAALLYYAALILV 228
            T  RMPYFSY+SMLHL ETLGWW  G+EVRKVHFAEE+NEM HLRIMESLGGD  W DRFFA+HAA  YY  L L+
Sbjct:  289 TVARMPYFSYISMLHLYETLGWWRIGAEVRKVHFAEEWNEMHHLRIMESLGGDLEWGDRFFAQHAAFFYYWVLNLM 364          
BLAST of mRNA_H-paniculata_contig34668.9245.1 vs. uniprot
Match: D8RPE6_SELML (Ubiquinol oxidase n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RPE6_SELML)

HSP 1 Score: 118 bits (296), Expect = 2.540e-31
Identity = 52/70 (74.29%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    1 THTRMPYFSYLSMLHLLETLGWWTGGSEVRKVHFAEEYNEMMHLRIMESLGGDTRWSDRFFARHAALLYY 210
            T  RMPYFSY+SMLHL ETLGWW  G++VRKVHFAEE+NEM HL+IMESLGGD  W DRFF +HAA  YY
Sbjct:   69 TVARMPYFSYISMLHLYETLGWWRVGADVRKVHFAEEWNEMHHLKIMESLGGDLLWGDRFFGQHAAFFYY 138          
BLAST of mRNA_H-paniculata_contig34668.9245.1 vs. uniprot
Match: A0A6U1QBH7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QBH7_9STRA)

HSP 1 Score: 122 bits (305), Expect = 5.920e-31
Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = 1
Query:    1 THTRMPYFSYLSMLHLLETLGWWTGGSEVRKVHFAEEYNEMMHLRIMESLGGDTRWSDRFFARHAALLYYAALILV 228
            T  RMPYFSY+SMLHL ETLGWW+ G EVRKVHFAEE+NEM HL IME+LGGD  W DRFFARHAA++YY  L L+
Sbjct:  287 TVARMPYFSYISMLHLYETLGWWSQGVEVRKVHFAEEWNEMRHLAIMEALGGDQIWLDRFFARHAAIVYYWLLNLI 362          
BLAST of mRNA_H-paniculata_contig34668.9245.1 vs. uniprot
Match: A0A0G4F067_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F067_VITBC)

HSP 1 Score: 121 bits (304), Expect = 1.800e-30
Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = 1
Query:    1 THTRMPYFSYLSMLHLLETLGWWTGGSEVRKVHFAEEYNEMMHLRIMESLGGDTRWSDRFFARHAALLYYAALILV 228
            T  RMPYF+Y+SMLHL ETLGWW  G+EVRKVHFAEE+NEM HL IMESLGGD  W DRF ARHAA++YY  LIL+
Sbjct:  459 TVARMPYFAYISMLHLYETLGWWRVGTEVRKVHFAEEWNEMHHLFIMESLGGDQAWLDRFLARHAAIVYYWVLILL 534          
BLAST of mRNA_H-paniculata_contig34668.9245.1 vs. uniprot
Match: A0A1Y1HI87_KLENI (Ubiquinol oxidase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HI87_KLENI)

HSP 1 Score: 120 bits (301), Expect = 2.750e-30
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 1
Query:    1 THTRMPYFSYLSMLHLLETLGWWTGGSEVRKVHFAEEYNEMMHLRIMESLGGDTRWSDRFFARHAALLYY 210
            T  RMPYFSY+SMLHL ETLGWW  G+EVRKVHFAEE+NEM HL+IMESLGGD +W DRFF +HAA  YY
Sbjct:  342 TVARMPYFSYISMLHLYETLGWWRVGAEVRKVHFAEEWNEMHHLKIMESLGGDNQWVDRFFGQHAAFFYY 411          
BLAST of mRNA_H-paniculata_contig34668.9245.1 vs. uniprot
Match: A0A4D9CVG3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVG3_9STRA)

HSP 1 Score: 120 bits (302), Expect = 3.230e-30
Identity = 54/76 (71.05%), Postives = 64/76 (84.21%), Query Frame = 1
Query:    1 THTRMPYFSYLSMLHLLETLGWWTGGSEVRKVHFAEEYNEMMHLRIMESLGGDTRWSDRFFARHAALLYYAALILV 228
            T  RMPYFSY+SMLHL ETLGWWT G++VR+VHFAEE+NE+ HL+IMESLGGD RW DRF ARH+A+ YY  L L+
Sbjct:  404 TVARMPYFSYISMLHLYETLGWWTIGTDVRRVHFAEEWNELHHLQIMESLGGDARWLDRFLARHSAIAYYWVLNLM 479          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34668.9245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCH2_9PHAE1.180e-3481.33Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S3XP24_HETAK2.190e-3376.32Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XP26_HETAK3.050e-3376.32Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YR99_9STRA1.080e-3178.57Alternative oxidase n=1 Tax=Tribonema minus TaxID=... [more]
A0A2K1IAY0_PHYPA1.310e-3175.00Ubiquinol oxidase n=3 Tax=Physcomitrium patens Tax... [more]
D8RPE6_SELML2.540e-3174.29Ubiquinol oxidase n=2 Tax=Selaginella moellendorff... [more]
A0A6U1QBH7_9STRA5.920e-3173.68Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0G4F067_VITBC1.800e-3073.68Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A1Y1HI87_KLENI2.750e-3075.71Ubiquinol oxidase n=1 Tax=Klebsormidium nitens Tax... [more]
A0A4D9CVG3_9STRA3.230e-3071.05Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34668contigH-paniculata_contig34668:314..1293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue3.9e-28
Seed eggNOG ortholog2880.D7FVT3
KEGG rclassRC00061
KEGG koko:K17893
KEGG ReactionR09504
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquinol:oxygen oxidoreductase activity
EggNOG OGs2CMS2@1,2QRMM@2759
EC1.10.3.11
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size228
Cds size216
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34668.9245.1prot_H-paniculata_contig34668.9245.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34668 326..1293 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930069.6630487-UTR-H-paniculata_contig34668:313..3251622930069.6630487-UTR-H-paniculata_contig34668:313..325Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34668 314..325 +
1691481134.4728043-UTR-H-paniculata_contig34668:313..3251691481134.4728043-UTR-H-paniculata_contig34668:313..325Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig34668 314..325 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930069.6834733-CDS-H-paniculata_contig34668:325..4211622930069.6834733-CDS-H-paniculata_contig34668:325..421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34668 326..421 +
1691481134.4855366-CDS-H-paniculata_contig34668:325..4211691481134.4855366-CDS-H-paniculata_contig34668:325..421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34668 326..421 +
1622930069.7005904-CDS-H-paniculata_contig34668:1173..12931622930069.7005904-CDS-H-paniculata_contig34668:1173..1293Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34668 1174..1293 +
1691481134.49524-CDS-H-paniculata_contig34668:1173..12931691481134.49524-CDS-H-paniculata_contig34668:1173..1293Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34668 1174..1293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34668.9245.1

>prot_H-paniculata_contig34668.9245.1 ID=prot_H-paniculata_contig34668.9245.1|Name=mRNA_H-paniculata_contig34668.9245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MPYFSYLSMLHLLETLGWWTGGSEVRKVHFAEEYNEMMHLRIMESLGGDT
RWSDRFFARHAALLYYAALILV
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mRNA from alignment at H-paniculata_contig34668:314..1293+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34668.9245.1 ID=mRNA_H-paniculata_contig34668.9245.1|Name=mRNA_H-paniculata_contig34668.9245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=980bp|location=Sequence derived from alignment at H-paniculata_contig34668:314..1293+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTCATACCAGGATGCCTTACTTTTCTTATCTTTCGATGCTGCACTTGTT GGAGACGCTGGGCTGGTGGACCGGAGGGTCAGAGGTTAGGAAGGTGCACT TCGCGGAGGTGAATAATCAAAACTGAAGAGAAATCAGGCAAAAAGACACC ACTTGAGTCTTTGTTTCTGTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCT CTCTCTGTCTCTCTCTGTCTCCCTCTGTCTCCCTCTGTCTCCCTCTGTCT CCCTCTGTCTCCCTCTGTCTCCCTCTGTCTCCCTCTGTCTCTCTCTGTCT CCCTCTGTCTCTCTCTGTCTCCCTCTGTCTCTCTCTGTCTCCCTCTGTCT CTCTCTTTGTCTCCCTCTGTCTCTCTCTTTGTCTCCCTCTGTCTCTCTCT GTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCT GTCTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCGCATTAGCTAATGAACT CCAAACACATGCGACATGATCTCCCTGAAAAGAAGGTTCTCTTGATTCAT TCACACACATATAAATATATATTTCCAACTATAGTAATAAACCTAAGGTA ACATATACATAAATTGTTTCTCTGTTTTTAACCTCTGTAGCGTCAAGAGA TGACACCATCTACGGAAGACAGCTTATTCGAATGAAACCGAAAAATGGCT ACACTTGGAAAATGAACCTGCGATAAACGGGTTGCCTTACACCCCCTACT ATAAACCTTCCTTCCCTCACCCTCCCCCAGCCCCGCACCTGCTGACGTCA TTCAATGGCTCTGTGGTCTCCTCGTTTTTTCTTTCGTGTGGTGTACCGTT GACCGCAAAGGAGTATAACGAAATGATGCACCTACGGATAATGGAGTCGC TTGGGGGCGACACGCGCTGGTCAGATCGGTTCTTCGCGCGGCACGCCGCC CTCCTTTACTACGCGGCCCTCATCTTGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig34668:314..1293+

>mRNA_H-paniculata_contig34668.9245.1 ID=mRNA_H-paniculata_contig34668.9245.1|Name=mRNA_H-paniculata_contig34668.9245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig34668:314..1293+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTTACTTTTCTTATCTTTCGATGCTGCACTTGTTGGAGACGCTGGG
CTGGTGGACCGGAGGGTCAGAGGTTAGGAAGGTGCACTTCGCGGAGATGC
CTTACTTTTCTTATCTTTCGATGCTGCACTTGTTGGAGACGCTGGGCTGG
TGGACCGGAGGGTCAGAGGTTAGGAAGGTGCACTTCGCGGAGGAGTATAA
CGAAATGATGCACCTACGGATAATGGAGTCGCTTGGGGGCGACACGCGCT
GGTCAGATCGGTTCTTCGCGCGGCACGCCGCCCTCCTTTACTACGCGGCC
CTCATCTTGGTGGAGTATAACGAAATGATGCACCTACGGATAATGGAGTC
GCTTGGGGGCGACACGCGCTGGTCAGATCGGTTCTTCGCGCGGCACGCCG
CCCTCCTTTACTACGCGGCCCTCATCTTGGTG
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