mRNA_H-paniculata_contig11421.919.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11421.919.1
Unique NamemRNA_H-paniculata_contig11421.919.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig11421.919.1 vs. uniprot
Match: A0A6H5KKD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.260e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:    4 VVAYKQRLEADECRRKAMDKHLVFLVKQTERY 99
            V+AYKQRLEADECRRKAMDKHLVFLVKQTERY
Sbjct:  394 VIAYKQRLEADECRRKAMDKHLVFLVKQTERY 425
[Close]
BLAST of mRNA_H-paniculata_contig11421.919.1 vs. uniprot
Match: D7FTP0_ECTSI (Similar to E1a binding protein P400 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP0_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.260e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:    4 VVAYKQRLEADECRRKAMDKHLVFLVKQTERY 99
            V+AYKQRLEADECRRKAMDKHLVFLVKQTERY
Sbjct:  301 VIAYKQRLEADECRRKAMDKHLVFLVKQTERY 332
[Close]
BLAST of mRNA_H-paniculata_contig11421.919.1 vs. uniprot
Match: A0A835ZKJ3_9STRA (SNF2 family N-terminal domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKJ3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.480e-9
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:    4 VVAYKQRLEADECRRKAMDKHLVFLVKQTERY 99
            VVAYKQ+LEADE RR+AMDKHLVFLVKQTERY
Sbjct:   78 VVAYKQKLEADEMRRRAMDKHLVFLVKQTERY 109
[Close]
BLAST of mRNA_H-paniculata_contig11421.919.1 vs. uniprot
Match: A0A7S2K6G5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K6G5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.160e-8
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    4 VVAYKQRLEADECRRKAMDKHLVFLVKQTERY 99
            VVAYKQ+LE DE ++KAMDKHLVFLVKQTE+Y
Sbjct:   39 VVAYKQKLETDERKQKAMDKHLVFLVKQTEKY 70
[Close]
BLAST of mRNA_H-paniculata_contig11421.919.1 vs. uniprot
Match: A0A7S4RJJ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RJJ1_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.050e-7
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    4 VVAYKQRLEADECRRKAMDKHLVFLVKQTERY 99
            V++YKQRL+AD  RRKAMD+HLVFLVKQTERY
Sbjct:   77 VISYKQRLDADAQRRKAMDRHLVFLVKQTERY 108
[Close]
BLAST of mRNA_H-paniculata_contig11421.919.1 vs. uniprot
Match: A0A7S2UTV0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UTV0_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 5.420e-7
Identity = 23/32 (71.88%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    4 VVAYKQRLEADECRRKAMDKHLVFLVKQTERY 99
            V+AYKQ+++AD  RRKAMD+HLVFLV+QTE+Y
Sbjct:   94 VIAYKQKVDADTYRRKAMDRHLVFLVRQTEKY 125
[Close]
BLAST of mRNA_H-paniculata_contig11421.919.1 vs. uniprot
Match: W7TML5_9STRA (Chromatin remodeling complex subunit (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TML5_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 2.990e-5
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 QVVAYKQRLEADECRRKAMDKHLVFLVKQTERY 99
            QVVA+KQ+LE +E R++AMDKHL FL+ QTERY
Sbjct:  326 QVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERY 358
[Close]
BLAST of mRNA_H-paniculata_contig11421.919.1 vs. uniprot
Match: A0A4D9D5K6_9STRA (HSA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5K6_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 2.990e-5
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 QVVAYKQRLEADECRRKAMDKHLVFLVKQTERY 99
            QVVA+KQ+LE +E R++AMDKHL FL+ QTERY
Sbjct:  299 QVVAFKQKLEVEEGRKRAMDKHLGFLLGQTERY 331
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11421.919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KKD6_9PHAE2.260e-1196.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTP0_ECTSI2.260e-1196.88Similar to E1a binding protein P400 (Partial) (Fra... [more]
A0A835ZKJ3_9STRA2.480e-990.63SNF2 family N-terminal domain-containing protein (... [more]
A0A7S2K6G5_9STRA3.160e-881.25Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S4RJJ1_9STRA1.050e-781.25Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S2UTV0_9STRA5.420e-771.88Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
W7TML5_9STRA2.990e-569.70Chromatin remodeling complex subunit (Fragment) n=... [more]
A0A4D9D5K6_9STRA2.990e-569.70HSA domain-containing protein n=1 Tax=Nannochlorop... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11421contigH-paniculata_contig11421:321..437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue1.7e-09
Seed eggNOG ortholog2880.D7FTP0
KEGG koko:K11320
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0391@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size117
Cds size117
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928850.9945433-CDS-H-paniculata_contig11421:320..4371622928850.9945433-CDS-H-paniculata_contig11421:320..437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11421 321..437 +
1691480644.39489-CDS-H-paniculata_contig11421:320..4371691480644.39489-CDS-H-paniculata_contig11421:320..437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11421 321..437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11421.919.1prot_H-paniculata_contig11421.919.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11421 321..437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11421.919.1

>prot_H-paniculata_contig11421.919.1 ID=prot_H-paniculata_contig11421.919.1|Name=mRNA_H-paniculata_contig11421.919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=39bp
QVVAYKQRLEADECRRKAMDKHLVFLVKQTERYRCVAF*
back to top

mRNA from alignment at H-paniculata_contig11421:321..437+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11421.919.1 ID=mRNA_H-paniculata_contig11421.919.1|Name=mRNA_H-paniculata_contig11421.919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=117bp|location=Sequence derived from alignment at H-paniculata_contig11421:321..437+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGGTCGCGTACAAGCAGCGGCTGGAAGCCGACGAGTGCCGACGGAA
AGCCATGGACAAACACCTCGTATTCTTAGTGAAGCAGACGGAACGATATA
GGTGCGTTGCTTTCTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11421:321..437+

>mRNA_H-paniculata_contig11421.919.1 ID=mRNA_H-paniculata_contig11421.919.1|Name=mRNA_H-paniculata_contig11421.919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at H-paniculata_contig11421:321..437+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGGTCGCGTACAAGCAGCGGCTGGAAGCCGACGAGTGCCGACGGAA
AGCCATGGACAAACACCTCGTATTCTTAGTGAAGCAGACGGAACGATATA
GGTGCGTTGCTTTCTAACAGGTGGTCGCGTACAAGCAGCGGCTGGAAGCC
GACGAGTGCCGACGGAAAGCCATGGACAAACACCTCGTATTCTTAGTGAA
GCAGACGGAACGATATAGGTGCGTTGCTTTCTAA
back to top