mRNA_H-paniculata_contig34572.9226.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig34572.9226.1 vs. uniprot
Match: A0A6H5JMA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA8_9PHAE) HSP 1 Score: 189 bits (481), Expect = 1.030e-52 Identity = 131/302 (43.38%), Postives = 177/302 (58.61%), Query Frame = 3
Query: 45 LGACAHFSGLRNTPAVLEQRVLEEGSLGIYESGEDEGQVPTHSWRHWPPDQRGEKAKTAAARDAQALDRLRVQLEEQQAALAALKAEVESREKSVNAKEAAIAKKEANK*RVDAKQQAKQQTHEQREHKLVEAAAHAAQQPKLSQAAYTLIDDSVDKLKP*SGEVLCNLQSKLIIMLLFAVRKDGVSENQSVLQVASTFKIGHSKVRDFNKQWWDNNTLLETTSEGRGKVTKNDDGRRRLTQSKEDQLYKLINDEYKAGRQFFRRTVAE*MMEHWNPHKEVSNRAVGGLLQRLGYRRRRGRI 950
L + H + + + AV+E L+EG L + +G+ P + ++AKTAAAR A +RL+ +LE+Q+AALAA + R A ++ ++Q +R V+AAA AA + Y +D SV ++KP GEV LQS++++MLLF +RK G SE ++VL+VA TFKIGH KVR N WWD+ L ETT+ GRGK K DDGRRRLT+ +EDQL + INDE+KAGRQ FRRTVAE M N ++ SN + GGLL RLG +RRRGRI
Sbjct: 6 LSSDNHKTSVGHNAAVVEYCTLKEGPLSYRPMAKPKGRRQPTGGVVGRPSKSDKRAKTAAARGPLAQERLQAELEQQRAALAADRXXXXXXXXXXXXXXXXXXXXXXEMARAAAPREMREQQDVER----VQAAAAAAAEKVAQGLDY--MDTSVHEVKPKKGEVWTQLQSRMVLMLLFDLRKGGCSEKEAVLKVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNM-EQPSNGSAGGLLSRLGCKRRRGRI 300
BLAST of mRNA_H-paniculata_contig34572.9226.1 vs. uniprot
Match: A0A6H5JVE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE0_9PHAE) HSP 1 Score: 179 bits (454), Expect = 1.000e-51 Identity = 96/157 (61.15%), Postives = 119/157 (75.80%), Query Frame = 3
Query: 480 AAYTLIDDSVDKLKP*SGEVLCNLQSKLIIMLLFAVRKDGVSENQSVLQVASTFKIGHSKVRDFNKQWWDNNTLLETTSEGRGKVTKNDDGRRRLTQSKEDQLYKLINDEYKAGRQFFRRTVAE*MMEHWNPHKEVSNRAVGGLLQRLGYRRRRGRI 950
AA+T D SV ++K GEV +LQS++++MLLF +RK+G SEN+ VLQVA TFKIGH KVR N WWD+ L ETT+ GRGK K DDGRRRLT+++EDQL + INDE+KAGRQ FRRTVAE M N ++ SNR+ GGLL RLG++RRRGRI
Sbjct: 44 AAWTT-DTSVHEVKSEKGEVRTHLQSRIVLMLLFDLRKEGCSENEVVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAAGRGKTAKKDDGRRRLTKAQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNM-EQPSNRSAGGLLSRLGFKRRRGRI 198
BLAST of mRNA_H-paniculata_contig34572.9226.1 vs. uniprot
Match: A0A6H5KAU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAU4_9PHAE) HSP 1 Score: 177 bits (448), Expect = 2.970e-48 Identity = 93/152 (61.18%), Postives = 113/152 (74.34%), Query Frame = 3
Query: 495 IDDSVDKLKP*SGEVLCNLQSKLIIMLLFAVRKDGVSENQSVLQVASTFKIGHSKVRDFNKQWWDNNTLLETTSEGRGKVTKNDDGRRRLTQSKEDQLYKLINDEYKAGRQFFRRTVAE*MMEHWNPHKEVSNRAVGGLLQRLGYRRRRGRI 950
+D SV ++KP EV LQS++++MLLF +RK G EN++VLQVA TFKIGH KVR N WWD+ L ETT+ GRGK K DDGRRRLT+ +EDQL + INDE+KAGRQ FRRTVAE M N ++ SNR+ GGLL RLGY+RRRGRI
Sbjct: 57 MDTSVHEVKPKKDEVWTQLQSRMVLMLLFDLRKGGCCENEAVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNM-EQPSNRSAGGLLSRLGYKRRRGRI 207
BLAST of mRNA_H-paniculata_contig34572.9226.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI) HSP 1 Score: 181 bits (458), Expect = 3.020e-48 Identity = 94/152 (61.84%), Postives = 118/152 (77.63%), Query Frame = 3
Query: 495 IDDSVDKLKP*SGEVLCNLQSKLIIMLLFAVRKDGVSENQSVLQVASTFKIGHSKVRDFNKQWWDNNTLLETTSEGRGKVTKNDDGRRRLTQSKEDQLYKLINDEYKAGRQFFRRTVAE*MMEHWNPHKEVSNRAVGGLLQRLGYRRRRGRI 950
+D SV ++KP GEV +LQS++++MLLF +RK+G SEN++VLQVA TFKIGH KVR N WWD+ L ETT+ GRGK+ K DDGRRRLT+ + DQL + INDE+KAGRQ FRRTVAE + N ++ SNR+VGGLL RLGY+RRRGRI
Sbjct: 118 MDTSVHEVKPKKGEVWTHLQSRMVLMLLFDLRKEGRSENEAVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAAGRGKMAKEDDGRRRLTEVQADQLREFINDEHKAGRQVFRRTVAEWVHRTCNM-EQPSNRSVGGLLSRLGYKRRRGRI 268
BLAST of mRNA_H-paniculata_contig34572.9226.1 vs. uniprot
Match: A0A6H5K4F5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4F5_9PHAE) HSP 1 Score: 158 bits (400), Expect = 4.250e-43 Identity = 114/264 (43.18%), Postives = 155/264 (58.71%), Query Frame = 3
Query: 159 VPTHSWRHWPPDQRGEKAKTAAARDAQALDRLRVQLEEQQAALAALKAEVESREKSVNAKEAAIAKKEANK*RVDAKQQAKQQTHEQREHKLVEAAAHAAQQPKLSQAAYTLIDDSVDKLKP*SGEVLCNLQSKLIIMLLFAVRKDGVSENQSVLQVASTFKIGHSKVRDFNKQWWDNNTLLETTSEGRGKVTKNDDGRRRLTQSKEDQLYKLINDEYKAGRQFFRRTVAE*MMEHWNPHKEVSNRAVGGLLQRLGYRRRRGRI 950
VPT PP + + AAAR+A+A+++L +E+++AA AA + V A EA++A+ R A+ QQ EQRE V AA AA KL A ++DSV L+P +GE+ QS++I+ML F + K G SEN + QVA T +IG KV W+D L ET +GRGK T DDGRR +T+ +ED L + I E++AGRQ FRRTV + + + E+SNRAVGGLLQRLG++RRRGRI
Sbjct: 8 VPTGGTSGRPP-KAIKGVNAAAARNAKAINKLLDDMEKREAATAAAEXXXXXXXXXVKAMEASVARDREKLARDIARSDVLQQQREQREQDRVSKAAEAATS-KLPPLALKFVEDSVQSLRPETGELTTLQQSRIILMLYFDLVKGGSSENHAKEQVAKTLRIGTDKVLAVRTLWYDKQELYETNGKGRGKATSVDDGRRVITKEQEDGLREFIKGEHEAGRQVFRRTVKDYLECSFG--LEMSNRAVGGLLQRLGFKRRRGRI 267
BLAST of mRNA_H-paniculata_contig34572.9226.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE) HSP 1 Score: 159 bits (401), Expect = 2.210e-40 Identity = 82/133 (61.65%), Postives = 101/133 (75.94%), Query Frame = 3
Query: 552 QSKLIIMLLFAVRKDGVSENQSVLQVASTFKIGHSKVRDFNKQWWDNNTLLETTSEGRGKVTKNDDGRRRLTQSKEDQLYKLINDEYKAGRQFFRRTVAE*MMEHWNPHKEVSNRAVGGLLQRLGYRRRRGRI 950
+S++++MLLF +RK G SE ++VL+VA TFKIGH KVR N WWD+ L E T+ GRGK K DDGRRRLT+ +EDQL + INDE+KAGRQ FRRTVAE M N ++ SNR+ GGLL RLGY+RRRGRI
Sbjct: 103 ESRMVLMLLFDLRKGGCSEKEAVLKVARTFKIGHDKVRRINNHWWDHRQLYEITAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNM-EQPSNRSAGGLLSRLGYKRRRGRI 234
BLAST of mRNA_H-paniculata_contig34572.9226.1 vs. uniprot
Match: A0A6H5KKL0_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL0_9PHAE) HSP 1 Score: 155 bits (392), Expect = 4.480e-40 Identity = 81/130 (62.31%), Postives = 99/130 (76.15%), Query Frame = 3
Query: 561 LIIMLLFAVRKDGVSENQSVLQVASTFKIGHSKVRDFNKQWWDNNTLLETTSEGRGKVTKNDDGRRRLTQSKEDQLYKLINDEYKAGRQFFRRTVAE*MMEHWNPHKEVSNRAVGGLLQRLGYRRRRGRI 950
+++MLLF +RK+G +EN++VLQVA TFKIGH KVR N WWD+ L ETT+ GRGK K DDGRRRLT+ +EDQL + INDE+KAGRQ FRRTVAE M N ++ SNR+ GLL RLGY+ RRGRI
Sbjct: 1 MVLMLLFDLRKEGRAENEAVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNM-EQPSNRSAEGLLSRLGYKGRRGRI 129
BLAST of mRNA_H-paniculata_contig34572.9226.1 vs. uniprot
Match: A0A6H5KGL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL0_9PHAE) HSP 1 Score: 149 bits (376), Expect = 1.950e-38 Identity = 100/229 (43.67%), Postives = 139/229 (60.70%), Query Frame = 3
Query: 264 LEEQQAALAALKAEVESREKSVNAKEAAIAKKEANK*RVDAKQQAKQQTHEQREHKLVEAAAHAAQQPKLSQAAYTLIDDSVDKLKP*SGEVLCNLQSKLIIMLLFAVRKDGVSENQSVLQVASTFKIGHSKVRDFNKQWWDNNTLLETTSEGRGKVTKNDDGRRRLTQSKEDQLYKLINDEYKAGRQFFRRTVAE*MMEHWNPHKEVSNRAVGGLLQRLGYRRRRGRI 950
+EE +AA AA +A + ++E+ V +A++A+ R A+ QQ E+RE V AA AA KL A ++DSV L+P +GE+ QS++I+ML F + K G SEN + QVA T +IG +V W+D L ET +GRGK T DDGRR +T+ +ED L + I E++AGRQ FRRTV + + + E+SNRAVGG LQRLG++RRRGRI
Sbjct: 1 MEEGEAATAAAEAALAAKEEEVKVMKASVARDREKLARDIARSDVLQQQRERREQDRVSKAAEAATS-KLPPLALKFVEDSVQWLRPKTGELTTLQQSRMILMLYFDLAKGGSSENHAKEQVAKTLRIGTDEVLTVRTLWYDKQELYETNGKGRGKATSVDDGRRVITKEQEDGLNEFIKGEHEAGRQVFRRTVKDCLECLYG--LEMSNRAVGGFLQRLGFKRRRGRI 226
BLAST of mRNA_H-paniculata_contig34572.9226.1 vs. uniprot
Match: A0A6H5K8G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8G5_9PHAE) HSP 1 Score: 141 bits (356), Expect = 2.390e-36 Identity = 100/236 (42.37%), Postives = 138/236 (58.47%), Query Frame = 3
Query: 243 LDRLRVQLEEQQAALAALKAEVESREKSVNAKEAAIAKKEANK*RVDAKQQAKQQTHEQREHKLVEAAAHAAQQPKLSQAAYTLIDDSVDKLKP*SGEVLCNLQSKLIIMLLFAVRKDGVSENQSVLQVASTFKIGHSKVRDFNKQWWDNNTLLETTSEGRGKVTKNDDGRRRLTQSKEDQLYKLINDEYKAGRQFFRRTVAE*MMEHWNPHKEVSNRAVGGLLQRLGYRRRRGRI 950
+++L +E++ AA AA +A + V A +A++A+ R A+ QQ E+RE V AA AA KL A ++DSV L+P +GE+ QS++I+ML F + K G SEN + QVA T +IG KV W+D L ET +GRGK T DDGRR +T+ +ED L + I E++AGRQ FRRT + + + E+SNRAVGGLLQRLG+ R RGRI
Sbjct: 1 MNKLLDDIEKRVAATAAAEAAIXXXXXEVKAMKASVARDRGKLARDIARSDVLQQQRERREQDRVSKAAEAAIS-KLPPLALKFVEDSVQSLRPKTGELTTLQQSRIILMLYFDLVKGGSSENHAKEQVAKTLRIGTDKVLAVRTLWYDKQELYETNGKGRGKATSFDDGRRVITKEQEDGLREFIKGEHEAGRQVFRRTGKDYL--ECSCGLEMSNRAVGGLLQRLGFERCRGRI 233
BLAST of mRNA_H-paniculata_contig34572.9226.1 vs. uniprot
Match: A0A6H5KDX2_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX2_9PHAE) HSP 1 Score: 145 bits (365), Expect = 2.180e-35 Identity = 91/189 (48.15%), Postives = 117/189 (61.90%), Query Frame = 3
Query: 384 AKQQAKQQTHEQREHKLVEAAAHAAQQPKLSQAAYTLIDDSVDKLKP*SGEVLCNLQSKLIIMLLFAVRKDGVSENQSVLQVASTFKIGHSKVRDFNKQWWDNNTLLETTSEGRGKVTKNDDGRRRLTQSKEDQLYKLINDEYKAGRQFFRRTVAE*MMEHWNPHKEVSNRAVGGLLQRLGYRRRRGRI 950
AK QQ E+RE V AA AA KL A ++DSV L+P +GE+ QS++I+ML F + K G SEN + QVA T +IG KV W+D L ET +GRGK T DDGRR +T+ +ED L + I E++AGRQ FRRTV + + + E+SNRAVGGLLQRLG++RRRGRI
Sbjct: 48 AKSDVLQQQRERREQDRVSKAAEAATS-KLPPLALKFVEDSVQSLRPKTGELTTLQQSRIILMLYFDLVKGGSSENHAKEQVAKTLRIGTDKVLAVRTLWYDKQELYETNGKGRGKATSVDDGRRVITKEQEDGLREFIKGEHEAGRQVFRRTVKDYLECSFG--LEMSNRAVGGLLQRLGFKRRRGRI 233 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34572.9226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig34572.9226.1 >prot_H-paniculata_contig34572.9226.1 ID=prot_H-paniculata_contig34572.9226.1|Name=mRNA_H-paniculata_contig34572.9226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp MLLFAVRKDGVSENQSVLQVASTFKIGHSKVRDFNKQWWDNNTLLETTSEback to top mRNA from alignment at H-paniculata_contig34572:621..2344+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig34572.9226.1 ID=mRNA_H-paniculata_contig34572.9226.1|Name=mRNA_H-paniculata_contig34572.9226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1724bp|location=Sequence derived from alignment at H-paniculata_contig34572:621..2344+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig34572:621..2344+ >mRNA_H-paniculata_contig34572.9226.1 ID=mRNA_H-paniculata_contig34572.9226.1|Name=mRNA_H-paniculata_contig34572.9226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig34572:621..2344+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |