mRNA_H-paniculata_contig34550.9222.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34550.9222.1
Unique NamemRNA_H-paniculata_contig34550.9222.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig34550.9222.1 vs. uniprot
Match: D8LD80_ECTSI (KH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD80_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 1.770e-52
Identity = 85/95 (89.47%), Postives = 91/95 (95.79%), Query Frame = 1
Query:   88 AKPDFPALSAREMGGGQDDFRRIRCPPHRLTPLRNSWENIVTPTVEHMKLQIRRASFNRKSRNVELKSSEHTEDASALQKTADFVQAFMLGFEVQ 372
            A+PDFPAL+AREMGGG+DDFRRIRCPPHRLTPLRN WENIVTPTVEHMKLQIR   FNRK+RNVELKSS+HTEDASALQKTADF+QAFMLGFEVQ
Sbjct:   47 ARPDFPALTAREMGGGKDDFRRIRCPPHRLTPLRNCWENIVTPTVEHMKLQIR---FNRKTRNVELKSSKHTEDASALQKTADFIQAFMLGFEVQ 138          
BLAST of mRNA_H-paniculata_contig34550.9222.1 vs. uniprot
Match: A0A835ZET5_9STRA (RNA-binding protein PNO1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZET5_9STRA)

HSP 1 Score: 142 bits (358), Expect = 5.370e-40
Identity = 79/121 (65.29%), Postives = 90/121 (74.38%), Query Frame = 1
Query:   13 AAATAALDDDDVEMESSSDVGKGAAAKPDFPALSAREM-GGGQDDFRRIRCPPHRLTPLRNSWENIVTPTVEHMKLQIRRASFNRKSRNVELKSSEHTEDASALQKTADFVQAFMLGFEVQ 372
            AA   A DDDD  M      G   A KP+FP LSA+++  G + D RRIRCPPHRLTPLR SWE+IV P VEHMKLQIR   FN K+RNVELK+S+ TED SALQ++ADFVQAFMLGFEVQ
Sbjct:   18 AAEAEAADDDDAAMGEGGQAG--GAMKPNFPPLSAQQLRAGAKSDIRRIRCPPHRLTPLRASWEHIVAPVVEHMKLQIR---FNPKARNVELKASQFTEDPSALQRSADFVQAFMLGFEVQ 133          
BLAST of mRNA_H-paniculata_contig34550.9222.1 vs. uniprot
Match: A0A6T5QRH5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QRH5_HETAK)

HSP 1 Score: 137 bits (344), Expect = 5.580e-38
Identity = 67/109 (61.47%), Postives = 85/109 (77.98%), Query Frame = 1
Query:   46 VEMESSSDVGKGAAAKPDFPALSAREMGGGQDDFRRIRCPPHRLTPLRNSWENIVTPTVEHMKLQIRRASFNRKSRNVELKSSEHTEDASALQKTADFVQAFMLGFEVQ 372
            V+ +S+ +  +    +P+FPALSA+EM GG ++FRRIR P HR TPLR  WENI+ P VEHMKLQIR   FN K+R+VE+K+SEHTED  A+QK ADF+QAFM+GFEVQ
Sbjct:   20 VQDDSTMETEQSGTIRPNFPALSAQEMAGGIEEFRRIRVPAHRYTPLREQWENIMQPVVEHMKLQIR---FNPKTRSVEMKTSEHTEDVGAIQKAADFIQAFMMGFEVQ 125          
BLAST of mRNA_H-paniculata_contig34550.9222.1 vs. uniprot
Match: A0A2P4X7L0_9STRA (RNA-binding protein PNO1-like protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X7L0_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.710e-35
Identity = 64/114 (56.14%), Postives = 85/114 (74.56%), Query Frame = 1
Query:   31 LDDDDVEMESSSDVGKGAAAKPDFPALSAREMGGGQDDFRRIRCPPHRLTPLRNSWENIVTPTVEHMKLQIRRASFNRKSRNVELKSSEHTEDASALQKTADFVQAFMLGFEVQ 372
            + +D ++M++  DV      +P+FPALSA++  GG++DFRR+R P HR TPL+N W NI+ P VEH+KLQIR    N K+R +ELK+S HT DA ALQK ADFVQA+M+GFEVQ
Sbjct:   22 VQEDQMDMDTEEDV-----VRPNFPALSAQQQSGGKNDFRRVRVPAHRYTPLKNDWPNIMKPIVEHLKLQIR---MNTKTRCIELKNSPHTTDAGALQKAADFVQAYMMGFEVQ 127          
BLAST of mRNA_H-paniculata_contig34550.9222.1 vs. uniprot
Match: A0A7S2XZF6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZF6_9STRA)

HSP 1 Score: 129 bits (324), Expect = 5.890e-35
Identity = 63/94 (67.02%), Postives = 75/94 (79.79%), Query Frame = 1
Query:   91 KPDFPALSAREMGGGQDDFRRIRCPPHRLTPLRNSWENIVTPTVEHMKLQIRRASFNRKSRNVELKSSEHTEDASALQKTADFVQAFMLGFEVQ 372
            KP+FPA+ A+   GG+ +FRRIR P HR TPLR  W+NI+ P VEHM+LQIR   FN K+R+VELK+SEHTEDA ALQK ADFVQAF +GFEVQ
Sbjct:   36 KPNFPAIKAKRTMGGRSEFRRIRVPAHRYTPLREQWQNIMDPVVEHMRLQIR---FNPKTRSVELKTSEHTEDAGALQKAADFVQAFCMGFEVQ 126          
BLAST of mRNA_H-paniculata_contig34550.9222.1 vs. uniprot
Match: W4FJZ4_9STRA (KH domain-containing protein n=5 Tax=Aphanomyces TaxID=100860 RepID=W4FJZ4_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.360e-34
Identity = 71/124 (57.26%), Postives = 88/124 (70.97%), Query Frame = 1
Query:    1 VEAGAAATAALDDDDVEMESSSDVGKGAAAKPDFPALSAREMGGGQDDFRRIRCPPHRLTPLRNSWENIVTPTVEHMKLQIRRASFNRKSRNVELKSSEHTEDASALQKTADFVQAFMLGFEVQ 372
            VEA AA TAA DD+D+++             P FPALSA+ + GG+DDFRR+R P HR TPL+N W NI+ P VEH+KLQ+R    N K+R VELK+  HT+DA ALQK ADFVQA+M+GFEVQ
Sbjct:   19 VEAHAAITAA-DDNDMDV------------VPSFPALSAQHLDGGKDDFRRVRVPAHRYTPLKNDWPNIMKPLVEHLKLQVR---MNMKTRCVELKNGPHTDDAGALQKGADFVQAYMMGFEVQ 126          
BLAST of mRNA_H-paniculata_contig34550.9222.1 vs. uniprot
Match: K3WKW4_GLOUD (KH domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WKW4_GLOUD)

HSP 1 Score: 127 bits (320), Expect = 2.680e-34
Identity = 66/112 (58.93%), Postives = 82/112 (73.21%), Query Frame = 1
Query:   37 DDDVEMESSSDVGKGAAAKPDFPALSAREMGGGQDDFRRIRCPPHRLTPLRNSWENIVTPTVEHMKLQIRRASFNRKSRNVELKSSEHTEDASALQKTADFVQAFMLGFEVQ 372
            DD VE+    D    +  +P FPALSA+E  GG++DFRR+R P HR TPL+N W NI+ P VEH++LQIR    N K+R +ELK+SEHT DA ALQK ADFVQA+M+GFEVQ
Sbjct:   24 DDSVEVMGEYDPNT-SVLRPSFPALSAQEQSGGKNDFRRVRVPAHRYTPLKNDWPNIMKPIVEHLRLQIR---MNTKTRCIELKNSEHTIDAGALQKAADFVQAYMMGFEVQ 131          
BLAST of mRNA_H-paniculata_contig34550.9222.1 vs. uniprot
Match: A0A6A3YBU7_9STRA (KH domain-containing protein n=6 Tax=Peronosporaceae TaxID=4777 RepID=A0A6A3YBU7_9STRA)

HSP 1 Score: 127 bits (319), Expect = 3.690e-34
Identity = 68/124 (54.84%), Postives = 88/124 (70.97%), Query Frame = 1
Query:    1 VEAGAAATAALDDDDVEMESSSDVGKGAAAKPDFPALSAREMGGGQDDFRRIRCPPHRLTPLRNSWENIVTPTVEHMKLQIRRASFNRKSRNVELKSSEHTEDASALQKTADFVQAFMLGFEVQ 372
            + A A A  A + D +E+E   +V +    +P FPALSA++  GG++DFRR+R P HR TPL+N W NI+ P VEH+KLQIR    N K+R +ELK+S HT DA ALQK ADFVQA+M+GFEVQ
Sbjct:   13 INAQAIAQQAQETDMMEVE---EVEEQGVVRPHFPALSAQQQSGGKNDFRRVRVPAHRYTPLKNDWPNIMKPVVEHLKLQIR---MNTKTRCIELKNSPHTTDAGALQKAADFVQAYMMGFEVQ 130          
BLAST of mRNA_H-paniculata_contig34550.9222.1 vs. uniprot
Match: A0A2D4BJV4_PYTIN (RNA-binding protein PNO1-like protein n=4 Tax=Pythium TaxID=4797 RepID=A0A2D4BJV4_PYTIN)

HSP 1 Score: 127 bits (318), Expect = 5.080e-34
Identity = 61/97 (62.89%), Postives = 78/97 (80.41%), Query Frame = 1
Query:   82 AAAKPDFPALSAREMGGGQDDFRRIRCPPHRLTPLRNSWENIVTPTVEHMKLQIRRASFNRKSRNVELKSSEHTEDASALQKTADFVQAFMLGFEVQ 372
            AA +P+FPALSA+E  GG++DFRR+R P HR TPL+N W N++TP V+H+KLQIR    N K+R +ELK+S  TED+ ALQK ADFVQA+M+GFEVQ
Sbjct:   36 AAMRPNFPALSAQEAEGGKNDFRRVRVPAHRYTPLKNDWPNLMTPIVDHLKLQIR---MNTKTRCIELKNSPFTEDSGALQKAADFVQAYMMGFEVQ 129          
BLAST of mRNA_H-paniculata_contig34550.9222.1 vs. uniprot
Match: H3G8F2_PHYRM (KH domain-containing protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3G8F2_PHYRM)

HSP 1 Score: 126 bits (317), Expect = 5.270e-34
Identity = 60/102 (58.82%), Postives = 78/102 (76.47%), Query Frame = 1
Query:   67 DVGKGAAAKPDFPALSAREMGGGQDDFRRIRCPPHRLTPLRNSWENIVTPTVEHMKLQIRRASFNRKSRNVELKSSEHTEDASALQKTADFVQAFMLGFEVQ 372
            ++ +    +P+FPALSA++  GG++DFRR+R P HR TPL+N W NI+ P VEH+KLQIR    N K+R +ELK+S HT DA ALQK ADFVQA+M+GFEVQ
Sbjct:   19 EIEEDGVVRPNFPALSAQQQAGGKNDFRRVRVPAHRYTPLKNDWPNIMKPIVEHLKLQIR---MNTKTRCIELKNSPHTTDAGALQKAADFVQAYMMGFEVQ 117          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34550.9222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD80_ECTSI1.770e-5289.47KH domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A835ZET5_9STRA5.370e-4065.29RNA-binding protein PNO1-like protein n=1 Tax=Trib... [more]
A0A6T5QRH5_HETAK5.580e-3861.47Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2P4X7L0_9STRA1.710e-3556.14RNA-binding protein PNO1-like protein (Fragment) n... [more]
A0A7S2XZF6_9STRA5.890e-3567.02Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W4FJZ4_9STRA2.360e-3457.26KH domain-containing protein n=5 Tax=Aphanomyces T... [more]
K3WKW4_GLOUD2.680e-3458.93KH domain-containing protein n=2 Tax=Pythiaceae Ta... [more]
A0A6A3YBU7_9STRA3.690e-3454.84KH domain-containing protein n=6 Tax=Peronosporace... [more]
A0A2D4BJV4_PYTIN5.080e-3462.89RNA-binding protein PNO1-like protein n=4 Tax=Pyth... [more]
H3G8F2_PHYRM5.270e-3458.82KH domain-containing protein n=3 Tax=Peronosporace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34550contigH-paniculata_contig34550:691..1849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.3
Seed ortholog evalue1.8e-41
Seed eggNOG ortholog2880.D8LD80
Preferred namePNO1
KEGG koko:K11884
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034471,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043248,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0051082,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.RNA binding
EggNOG OGsCOG1094@1,KOG3273@2759
Ec32 ortholog descriptionK Homology domain, type 1
Ec32 orthologEc-05_001430.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03051
Exons2
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930066.5567575-CDS-H-paniculata_contig34550:690..8081622930066.5567575-CDS-H-paniculata_contig34550:690..808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34550 691..808 -
1691481133.0214324-CDS-H-paniculata_contig34550:690..8081691481133.0214324-CDS-H-paniculata_contig34550:690..808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34550 691..808 -
1622930066.5695105-CDS-H-paniculata_contig34550:1595..18491622930066.5695105-CDS-H-paniculata_contig34550:1595..1849Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34550 1596..1849 -
1691481133.03618-CDS-H-paniculata_contig34550:1595..18491691481133.03618-CDS-H-paniculata_contig34550:1595..1849Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34550 1596..1849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34550.9222.1prot_H-paniculata_contig34550.9222.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34550 691..1849 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34550.9222.1

>prot_H-paniculata_contig34550.9222.1 ID=prot_H-paniculata_contig34550.9222.1|Name=mRNA_H-paniculata_contig34550.9222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
VEAGAAATAALDDDDVEMESSSDVGKGAAAKPDFPALSAREMGGGQDDFR
RIRCPPHRLTPLRNSWENIVTPTVEHMKLQIRRASFNRKSRNVELKSSEH
TEDASALQKTADFVQAFMLGFEVQ
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mRNA from alignment at H-paniculata_contig34550:691..1849-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34550.9222.1 ID=mRNA_H-paniculata_contig34550.9222.1|Name=mRNA_H-paniculata_contig34550.9222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1159bp|location=Sequence derived from alignment at H-paniculata_contig34550:691..1849- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGAAGCCGGGGCAGCAGCAACAGCTGCGTTGGATGATGATGATGTAGA AATGGAATCTTCGTCAGATGTCGGAAAAGGCGCTGCCGCTAAACCAGATT TTCCGGCCCTCAGTGCTCGGGAGATGGGTGGCGGTCAGGATGACTTCAGA CGAATTCGGTGCCCGCCGCATCGGTTAACGCCTCTCCGGAATTCCTGGGA AAATATCGTTACGCCTACCGTCGAGCACATGAAGCTGCAAATCAGGCGAG CATCGTTATGATGAGAAGTACGTACACAAGATATATTTTTTTACCCCCCC CGGACCAATACGAATACTTGGCGTATTCGAGACGAAAATCAAAAAGTATT CACCTGAGTTTCAAATTGATCTCGTGTATTCATTGTGCCCCGAACCATTC ACGACTGGTATACACTTGTTGTAAATCGAATGTACAGGGGTGGGTACTTT ATTCTTCGTGTCCGCTCAATCTGAAATTCAGGCGAATAATTTTTCATTTT CGTGGCGAGTACGCCGAGTATTCGTACTTGTCCGCCGGGTAAAATATTTT CCTCTGTTGCTTCAATACACTGAGGTGGTGATTGTGATCGTGATCGTTGC TATTGTGGGCGATTCGGAATATTTTTTTCTAGTCTTTGCTCGAGTAGCAT CTGAGTGTTGACCTTGCGCATATTTTGTCTGATATGGGCACAACCGTAGC GAGCGGGTAATGCGTGGTCCATTTAGTTTTGGATCATGACTGCACATATT TTGAATTCGAAATGATTGAAAAAAAACTGTGCCAAAATATATATATATTT TTTGTACGATACAGTAAAATCGCAGACATGGATAAAAAATCAAAGAGTAT ATGTCACTGTGCGGGTACCCTTCCAAGCTGAACACCTTCAACGGCTCCTC AGTTAGTTGGCCAATCGAAGATTGTGTCCCCCAATGATGAAGACGACTAA CAAACATGATGGTAGGGTTCAATTATTGAGGATTCGCGAGCCGCGGTTGT AGGAGGTGTGGTGATGTCTTGTCGTTGTTGGTATCGTGCAGGTTTAATCG CAAGAGCCGCAACGTGGAGCTGAAGTCTTCCGAACACACAGAGGACGCGT CAGCCTTGCAGAAGACTGCCGATTTCGTCCAGGCCTTCATGCTAGGCTTC GAAGTACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig34550:691..1849-

>mRNA_H-paniculata_contig34550.9222.1 ID=mRNA_H-paniculata_contig34550.9222.1|Name=mRNA_H-paniculata_contig34550.9222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig34550:691..1849- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGAAGCCGGGGCAGCAGCAACAGCTGCGTTGGATGATGATGATGTAGA
AATGGAATCTTCGTCAGATGTCGGAAAAGGCGCTGCCGCTAAACCAGATT
TTCCGGCCCTCAGTGCTCGGGAGATGGGTGGCGGTCAGGATGACTTCAGA
CGAATTCGGTGCCCGCCGCATCGGTTAACGCCTCTCCGGAATTCCTGGGA
AAATATCGTTACGCCTACCGTCGAGCACATGAAGCTGCAAATCAGGCGAG
CATCGTGGAAGCCGGGGCAGCAGCAACAGCTGCGTTGGATGATGATGATG
TAGAAATGGAATCTTCGTCAGATGTCGGAAAAGGCGCTGCCGCTAAACCA
GATTTTCCGGCCCTCAGTGCTCGGGAGATGGGTGGCGGTCAGGATGACTT
CAGACGAATTCGGTGCCCGCCGCATCGGTTAACGCCTCTCCGGAATTCCT
GGGAAAATATCGTTACGCCTACCGTCGAGCACATGAAGCTGCAAATCAGG
CGAGCATCGTTTAATCGCAAGAGCCGCAACGTGGAGCTGAAGTCTTCCGA
ACACACAGAGGACGCGTCAGCCTTGCAGAAGACTGCCGATTTCGTCCAGG
CCTTCATGCTAGGCTTCGAAGTACAGGTTTAATCGCAAGAGCCGCAACGT
GGAGCTGAAGTCTTCCGAACACACAGAGGACGCGTCAGCCTTGCAGAAGA
CTGCCGATTTCGTCCAGGCCTTCATGCTAGGCTTCGAAGTACAG
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