mRNA_H-paniculata_contig34531.9216.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig34531.9216.1
Unique NamemRNA_H-paniculata_contig34531.9216.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig34531.9216.1 vs. uniprot
Match: D7FSQ2_ECTSI (RNA_pol_Rbc25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSQ2_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 7.410e-11
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:  100 EGEATFTLALHDEVRFRVRTIDFTQVKTTSTGSLQATTVSTARG 231
            E + +F+L LHDEVRFRVRT++FTQV +T+TGSLQATTVSTARG
Sbjct:  172 ENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARG 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig34531.9216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSQ2_ECTSI7.410e-1175.00RNA_pol_Rbc25 domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig34531contigH-paniculata_contig34531:408..1919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue7.5e-09
Seed eggNOG ortholog2880.D7FSQ2
Preferred namePOLR3H
KEGG rclassRC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01715,RC01734,RC02273,RC02795
KEGG koko:K00121,ko:K03022
KEGG ReactionR00435,R00441,R00442,R00443,R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R06983,R07105,R08281,R08306,R08310
KEGG Pathwayko00010,ko00071,ko00230,ko00240,ko00350,ko00625,ko00626,ko00680,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko03020,ko04623,ko05169,ko05204,map00010,map00071,map00230,map00240,map00350,map00625,map00626,map00680,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01200,map01220,map03020,map04623,map05169,map05204
KEGG ModuleM00181
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005694,GO:0006139,GO:0006351,GO:0006352,GO:0006383,GO:0006384,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.transcription initiation from RNA polymerase III promoter
EggNOG OGsCOG1095@1,KOG3297@2759
Ec32 ortholog descriptionRNA polymerase Rpb7, N-terminal
Ec32 orthologEc-03_002970.1
EC1.1.1.1,1.1.1.284
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021
Exons2
Model size236
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930066.0046906-CDS-H-paniculata_contig34531:407..5811622930066.0046906-CDS-H-paniculata_contig34531:407..581Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34531 408..581 +
1691481132.8036335-CDS-H-paniculata_contig34531:407..5811691481132.8036335-CDS-H-paniculata_contig34531:407..581Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34531 408..581 +
1622930066.024246-CDS-H-paniculata_contig34531:1858..19181622930066.024246-CDS-H-paniculata_contig34531:1858..1918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34531 1859..1918 +
1691481132.818654-CDS-H-paniculata_contig34531:1858..19181691481132.818654-CDS-H-paniculata_contig34531:1858..1918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig34531 1859..1918 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig34531.9216.1prot_H-paniculata_contig34531.9216.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig34531 408..1918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig34531.9216.1

>prot_H-paniculata_contig34531.9216.1 ID=prot_H-paniculata_contig34531.9216.1|Name=mRNA_H-paniculata_contig34531.9216.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
ADDEGEATATLSGEGGSGRKGQEHGQDIDGQGEEGEATFTLALHDEVRFR
VRTIDFTQVKTTSTGSLQATTVSTARGG
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mRNA from alignment at H-paniculata_contig34531:408..1919+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig34531.9216.1 ID=mRNA_H-paniculata_contig34531.9216.1|Name=mRNA_H-paniculata_contig34531.9216.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1512bp|location=Sequence derived from alignment at H-paniculata_contig34531:408..1919+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGACGACGAAGGGGAAGCGACGGCAACTTTATCGGGGGAGGGCGGGTC
AGGACGGAAGGGGCAGGAACACGGGCAGGACATAGATGGGCAGGGGGAAG
AAGGGGAGGCGACGTTCACGCTGGCGCTGCACGATGAAGTACGATTTCGA
GTGCGAACAATAGATTTCACCCAGGTTTGTACAGCATTTGGACGTAACGA
AAAATGTTGTACAGCATTTGGACATAACGAAATTGCCTAACGTGTGCAAG
CGGGGTGAAGCATTTGATCGCTGTGAAAAATTGTGAATAGGTCGCTGTTA
CGAGAGGCGTTTTGCTTTATGGTATACGTCGGTAGGTATTATGTTTTTAG
TTGTTGTTTAGCTGAGATGAATCATCATCCTTTAGATTTACCAGAAGCAG
AAGCAGAGATAGTTTCAGGATATGATGTTGAGTATTCTGCTATGGGATTT
GCTTTTTTTTTTTTTTTTTTTTAGGTGAGTACTCTATAATAATATTTTTA
TTTATGAGTGCCTTAACTTCAATTTTATTTCTAGGGAGTTGGTTGCCTGT
TTTTGGTTTGAATAACGAAACATTTTGTATAATGGGGCAAGTGACTTTTA
ATAATAGGCGAGCTTGAGCTGTTATAAGCGTAGGCGAAGATAAATCGAGC
TTGTACAGCATTTTAAAGTCTGTTGTTAAATACCCGAAACCGGTTGATCT
AAACTGGAGCAGGCTGATATTGATTGTAATGGTAATATTCTTTGAAGGGC
CGAACCCGTGTATGTGGCAAAATGCTGGGATGACTTGAGTTTAGGGGTGA
AAGGCCAATCAAGATCGATTATAGCTGGATTTCTGCGAAATCTATTTAAG
TAGAGCGTTCTAATAAAAAATAATTAGGGGTAGAGCACTATGCAGAGTGG
GTCAACGGCACCCCTCGCAAGGAGAAAAATATAGGCTTCCTGATCAAGAA
TCATGAATAATGACGAATGTGTCTACATAATACTCGTCGGTTGTCAGGTC
CAAAGAGAGACGTTTTTTTTCCTTATGTAGGTCTTATTCCTTCGTATTCC
ATTATTCAGTGTTCCATAACTGGAGAATGGCCAAACACAGCGCTTGTTTC
GTAAGGACTAAATGACAACACGACTACCGTGAAACGTTGCATCTTGAGTG
CTGGCTAGCTAGGTTTTCCCGAAATATCATTTTTATCCCGTATGTATATG
GTGAGTAACAGCTCCAGTGATCGTCGAGTTATGACGGTTTCCAAAAGTTG
AACACAATGTTTTTGTGGTAATGCCCCCTACCCTGAAACCCGCTCGGATT
GTCCGGTCCACCTAACATGATAGTACAAGATATTTTCGGTCAGAATATTT
TTTCATAGTGTACTGTACTGTTCAGTACAGTACAGTAGTACGGCATCGTA
ACATGCTTGCAGTCGATGTAATTCCGCTGGGGCCTTCGATGGGTTGCTCA
GGTGAAGACGACGTCGACTGGGAGCCTGCAGGCTACGACGGTGTCCACCG
CGAGAGGAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig34531:408..1919+

>mRNA_H-paniculata_contig34531.9216.1 ID=mRNA_H-paniculata_contig34531.9216.1|Name=mRNA_H-paniculata_contig34531.9216.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig34531:408..1919+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGACGACGAAGGGGAAGCGACGGCAACTTTATCGGGGGAGGGCGGGTC
AGGACGGAAGGGGCAGGAACACGGGCAGGACATAGATGGGCAGGGGGAAG
AAGGGGAGGCGACGTTCACGCTGGCGCTGCACGATGAAGTACGATTTCGA
GTGCGAACAATAGATTTCACCCAGGCAGACGACGAAGGGGAAGCGACGGC
AACTTTATCGGGGGAGGGCGGGTCAGGACGGAAGGGGCAGGAACACGGGC
AGGACATAGATGGGCAGGGGGAAGAAGGGGAGGCGACGTTCACGCTGGCG
CTGCACGATGAAGTACGATTTCGAGTGCGAACAATAGATTTCACCCAGGT
GAAGACGACGTCGACTGGGAGCCTGCAGGCTACGACGGTGTCCACCGCGA
GAGGAGGGGTGAAGACGACGTCGACTGGGAGCCTGCAGGCTACGACGGTG
TCCACCGCGAGAGGAGGG
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